View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_21 (Length: 501)

Name: NF11737A_low_21
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_21
NF11737A_low_21
[»] chr6 (3 HSPs)
chr6 (16-501)||(13413979-13414467)
chr6 (364-472)||(9857959-9858067)
chr6 (229-282)||(5193917-5193970)
[»] chr8 (3 HSPs)
chr8 (16-501)||(25320757-25321244)
chr8 (365-472)||(42451376-42451483)
chr8 (23-152)||(23448322-23448450)
[»] chr7 (3 HSPs)
chr7 (230-498)||(48779262-48779533)
chr7 (110-291)||(13062725-13062906)
chr7 (18-86)||(13808879-13808947)
[»] chr1 (3 HSPs)
chr1 (16-351)||(13112170-13112504)
chr1 (182-282)||(14975621-14975721)
chr1 (362-417)||(41805522-41805577)
[»] chr2 (5 HSPs)
chr2 (230-498)||(354598-354868)
chr2 (182-282)||(26245481-26245581)
chr2 (182-282)||(45718263-45718363)
chr2 (229-282)||(15139099-15139152)
chr2 (364-472)||(40370064-40370172)
[»] chr3 (4 HSPs)
chr3 (16-351)||(1231083-1231417)
chr3 (404-435)||(20356187-20356218)
chr3 (23-80)||(42829868-42829925)
chr3 (224-288)||(9709913-9709977)
[»] scaffold0094 (1 HSPs)
scaffold0094 (196-282)||(17193-17279)
[»] chr4 (5 HSPs)
chr4 (161-274)||(17536264-17536377)
chr4 (182-255)||(55430802-55430875)
chr4 (357-472)||(17536463-17536578)
chr4 (23-83)||(17536127-17536187)
chr4 (170-246)||(32154075-32154151)
[»] scaffold0003 (1 HSPs)
scaffold0003 (367-465)||(223452-223550)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 13413979 - 13414467
Alignment:
Q  16 atcacaagtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggatggcctccgcttctacagcccataaccaac 115  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13413979 atcacaagtttccaaaaacttagtttcctagaatccccaccgataggaagtcccaagtacacaaacgggatgacctccgcttctacagcccataaccaac 13414078  T
Q  116 gccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaagaaata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13414079 gccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacttttgtgaaagttgacttttaatcccgaaatctcctaaaataaaagaaata 13414178  T
Q  216 ctgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcc 315  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13414179 ctgccggcatagaacgcacgttcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagcctcacctcccccattcggcc 13414278  T
Q  316 cacaccataaccttggaaaagttgtgcttccaccatagcct---tcaatatattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtcc 412  Q
    |||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  13414279 cacaccataaccttggaaaagttgcgcttccaccatagccttcatcaatatattaaaaccttcagtagctaacaaaaataagaacgacgatagagggtcc 13414378  T
Q  413 ccttgacggagtcccctttccatcttaaactcatctgtcagacatccattgacaagaaccaatgcagttgccgttcccacacattctga 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  13414379 ccttgacggagtcccctttccatcttaaactcatctgtcagacatccattaacaagaaccaatgcagttgccattcccaaacattctga 13414467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 9857959 - 9858067
Alignment:
Q  364 attaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcccctttccatcttaaactcatctgtcagacatccattg 463  Q
    ||||||||||||| | || |||||||||||||| |  || | |||||||||||| | ||| ||||| || ||   |||||| || |||||||||||||||    
T  9857959 attaaaaccttcgtctgccaacaaaaataagaaaggtgacaaagggtccccttgtcagaggcccctctcaataggaaactcttcagtcagacatccattg 9858058  T
Q  464 acaagaacc 472  Q
    |||||||||    
T  9858059 acaagaacc 9858067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 5193970 - 5193917
Alignment:
Q  229 acgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactg 282  Q
    |||||||||||||||||| |||||||| | ||| ||||||| ||||||||||||    
T  5193970 acgcacattcaaccaacttttttcaccaagaattagagtgtcatcagcaaactg 5193917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 501
Target Start/End: Original strand, 25320757 - 25321244
Alignment:
Q  16 atcacaagtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggatggcctccgcttctacagcccataaccaac 115  Q
    |||||| |||||||||| |||| ||| |||||||||||||| || ||||||||||||||||| ||||| ||||  ||| ||||||||   |||||||| |    
T  25320757 atcacaggtttccaaaagcttagttttctagaatccccaccaatcggaagtcccaagtacacgaacggaatgga-tccccttctacaattcataaccatc 25320855  T
Q  116 gccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaagaaata 215  Q
    | ||| |  || ||||| || |||  || ||| ||||  || | ||||| ||| ||||| ||||||||||| || || |||||||| || ||||  || |    
T  25320856 gacgcttccgctaaccacgactcattaatatttacaccagtaagcatacttttatgaaaattgacttttaaaccagacatctcctcgaacaaaaccaaaa 25320955  T
Q  216 ctgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcc 315  Q
    | ||  ||||||||||||| || |||||||||||||| |||| |||||| || | ||| || ||||| |  ||||| || ||  ||||||| ||||||||    
T  25320956 ccgcacgcatagaacgcacgtttaaccaactcttttcgcctaaaatgagggtatcatccgcgaactgtaggtgtgtgagcctttcctccccaattcggcc 25321055  T
Q  316 cacaccataaccttggaaaagttgtgcttccaccatagc---cttcaatatattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtcc 412  Q
    ||| ||||||||     |||||||||||||||||| |||   | |||| | |||||| |||||||| || ||||||||||  || |  ||||| || |||    
T  25321056 caccccataaccggtataaagttgtgcttccaccaaagctctcatcaagacattaaacccttcggcggccaacaaaaatagaaaaggagatagcggatcc 25321155  T
Q  413 ccttgacggagtcccctttccatcttaaactcatctgtcagacatccattgacaagaaccaatgcagttgccgttcccacacattctga 501  Q
     | ||||| || ||||||||||| || |||||||||||  | |  ||||| ||||||| | | || || ||||| ||||||||||||||    
T  25321156 tcctgacgaagacccctttccattttgaactcatctgtagggctgccattaacaagaatcgacgctgtcgccgtgcccacacattctga 25321244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 472
Target Start/End: Complemental strand, 42451483 - 42451376
Alignment:
Q  365 ttaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcccctttccatcttaaactcatctgtcagacatccattga 464  Q
    ||||||||||| || ||||| ||||||||||| | ||| ||||||||||| ||||| || ||||  |||||   |||||| || ||| |||| || ||||    
T  42451483 ttaaaaccttcagctgctaataaaaataagaatggcgaaagagggtccccctgacgaaggccccgctccataggaaactcttccgtcggacacccgttga 42451384  T
Q  465 caagaacc 472  Q
    ||||||||    
T  42451383 caagaacc 42451376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 23448322 - 23448450
Alignment:
Q  23 gtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggatggcctccgcttctacagcccataaccaacgccgcct 122  Q
    ||||||||||| | | ||| |||| ||||||||| || ||||||||||| ||||||||||| || | | || || |||||   ||||||||| |||||||    
T  23448322 gtttccaaaaattcaattttctaggatccccaccaattggaagtcccaaatacacaaacggaatagac-cccctcctacaattcataaccaaagccgcct 23448420  T
Q  123 ttgccaaccaagaatcagcaacattaacac 152  Q
      ||||||||||| |||  || ||||||||    
T  23448421 ccgccaaccaagactcattaatattaacac 23448450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 230 - 498
Target Start/End: Original strand, 48779262 - 48779533
Alignment:
Q  230 cgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcccacaccataacctt 329  Q
    ||||||||||||||||||||||| |||| ||||||||| || ||||| ||||| |  || || |||| ||| ||||||   | ||||| ||||||||||     
T  48779262 cgcacattcaaccaactcttttcgcctaaaatgagagtattgtcagcgaactgaaggtgagtcagacgcacttccccctcacagcccaaaccataacctc 48779361  T
Q  330 ggaaaagttgtgcttccaccatagccttca---atatattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcc 426  Q
    | || ||||| |||||||||||||| ||||   | ||||||||||||||||| || || |||||||  || | ||| ||||||||||||||||| || ||    
T  48779362 gaaagagttgcgcttccaccatagcattcatcaaaatattaaaaccttcggctgccaataaaaatagaaatggcgaaagagggtccccttgacgaaggcc 48779461  T
Q  427 cctttccatcttaaactcatctgtcagacatccattgacaagaaccaatgcagttgccgttcccacacattc 498  Q
    ||| || |  ||||||||||| ||| ||||||| || ||||||||| | |  || |||||||||||||||||    
T  48779462 cctctcaacattaaactcatcagtcggacatccgttaacaagaaccgacgttgtagccgttcccacacattc 48779533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 291
Target Start/End: Complemental strand, 13062906 - 13062725
Alignment:
Q  110 accaacgccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaa 209  Q
    ||||||||||| | || |||||||||||||| || |||||| |  || | ||||| |||||  ||||| || || |  |||||||| | |||||| || |    
T  13062906 accaacgccgcttctgacaaccaagaatcaggaatattaacccccgtcagcatacttttgttgaagttaaccttgagacccgaaatattctcaaacaata 13062807  T
Q  210 gaaatactgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgt 291  Q
    | || |||||  ||||||  |||||||||  |||||| || ||||| |||||||| |||| ||| || ||||||||||||||    
T  13062806 gcaacactgctcgcatagtgcgcacattctgccaacttttatcaccaataatgagtgtgtcatctgcgaactgcaaatgtgt 13062725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 13808879 - 13808947
Alignment:
Q  18 cacaagtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggat 86  Q
    |||| ||||||||||||| | |||||| |||||||||| ||| ||||||||||| || ||||| |||||    
T  13808879 cacaggtttccaaaaactaagtttcctcgaatccccactgatgggaagtcccaaataaacaaaagggat 13808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 13112504 - 13112170
Alignment:
Q  16 atcacaagtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggatggcctccgcttctacagcccataaccaac 115  Q
    |||||| |||||||||| |||| ||| |||||||||||||| || ||||||||||||||||||||| | ||||  ||| ||||||||   |||||||| |    
T  13112504 atcacaggtttccaaaagcttagttttctagaatccccaccaatcggaagtcccaagtacacaaacagaatgga-tccccttctacaattcataaccatc 13112406  T
Q  116 gccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaagaaata 215  Q
    | |||    || ||||| || |||  || ||| ||||  || | ||||| ||| ||||| ||||||||||| || || |||||||| || ||||| || |    
T  13112405 gacgctgccgctaaccacgactcattaatatttacaccagtaagcatacttttatgaaaattgacttttaaaccagacatctcctcgaacaaaagtaaaa 13112306  T
Q  216 ctgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcc 315  Q
    | ||  ||||||||||||| || ||||||||||||||||||| |||||| || |  ||||| ||||| |  ||||| || ||  |||||||  ||| |||    
T  13112305 ccgcacgcatagaacgcacgtttaaccaactcttttcacctaaaatgagggtatcgtcagcgaactgaaggtgtgtgagcctttcctccccatttcagcc 13112206  T
Q  316 cacaccataaccttggaaaagttgtgcttccaccat 351  Q
    ||| |||||||| | | |||||||||||||||||||    
T  13112205 caccccataaccgttgtaaagttgtgcttccaccat 13112170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 14975721 - 14975621
Alignment:
Q  182 tttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaact 281  Q
    ||||||||||||||||| ||||| ||||| || || ||| ||||||| || ||||||||||||||||| ||||| || |||||||| | |||||||||||    
T  14975721 tttaatcccgaaatctcttcaaacaaaagcaacaccgcccgcatagatcggacattcaaccaactcttctcaccaattatgagagtatcatcagcaaact 14975622  T
Q  282 g 282  Q
    |    
T  14975621 g 14975621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 41805577 - 41805522
Alignment:
Q  362 atattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttg 417  Q
    ||||||||||||||||  || ||||||||||||||||  |||||||||||||||||    
T  41805577 atattaaaaccttcggttgccaacaaaaataagaacggtgatagagggtccccttg 41805522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 230 - 498
Target Start/End: Complemental strand, 354868 - 354598
Alignment:
Q  230 cgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcccacaccataacctt 329  Q
    ||||||||||||||||||||||| |||| ||||||||| |  ||| | ||||| |  || || |||||||| ||||| ||   | |||  |||||||||     
T  354868 cgcacattcaaccaactcttttcgcctaaaatgagagtatcgtcaacgaactgaaggtgagtcagactcacttcccc-atcacgtccatgccataacctc 354770  T
Q  330 ggaaaagttgtgcttccaccatagccttca---atatattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcc 426  Q
      || ||||| |||||||||||||| ||||   | ||||||||||||| |||||| || |||||||  || | ||| ||||||||||||||||| || ||    
T  354769 taaagagttgcgcttccaccatagcattcatcaaaatattaaaacctttggcagccaataaaaatagaaatggcgagagagggtccccttgacgaaggcc 354670  T
Q  427 cctttccatcttaaactcatctgtcagacatccattgacaagaaccaatgcagttgccgttcccacacattc 498  Q
    ||| || |   ||||||| || ||| |||| ||||| ||||||||| | || || |||||||||||||||||    
T  354669 cctctcaacagtaaactcgtcagtcggacacccattaacaagaaccgacgctgtagccgttcccacacattc 354598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 26245581 - 26245481
Alignment:
Q  182 tttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaact 281  Q
    |||||||||||||||| |||||| ||||| || || ||| ||||||| || ||||||||||||||||| ||||| || |||||||| | |||||||||||    
T  26245581 tttaatcccgaaatcttctcaaacaaaagcaacaccgcccgcatagatcggacattcaaccaactcttctcaccaattatgagagtatcatcagcaaact 26245482  T
Q  282 g 282  Q
    |    
T  26245481 g 26245481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 282
Target Start/End: Original strand, 45718263 - 45718363
Alignment:
Q  182 tttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaact 281  Q
    ||||||||||||||||  ||||| ||||| || || ||| ||||||| || ||||||||||||||||| ||||| || |||||||| | |||||||||||    
T  45718263 tttaatcccgaaatcttttcaaacaaaagcaacaccgcccgcatagatcggacattcaaccaactcttctcaccaattatgagagtatcatcagcaaact 45718362  T
Q  282 g 282  Q
    |    
T  45718363 g 45718363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 15139152 - 15139099
Alignment:
Q  229 acgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactg 282  Q
    ||||||||||||||||||||||||||| | ||||||||| | |||| |||||||    
T  15139152 acgcacattcaaccaactcttttcaccaagaatgagagtatcatcaacaaactg 15139099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 472
Target Start/End: Original strand, 40370064 - 40370172
Alignment:
Q  364 attaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcccctttccatcttaaactcatctgtcagacatccattg 463  Q
    |||||| |||||||| ||||| ||||||||||| | ||| ||||||||||| ||||| || ||||  |||||   |||||| |  ||| |||| ||||||    
T  40370064 attaaatccttcggctgctaataaaaataagaatggcgaaagagggtccccctgacgaagaccccgctccataggaaactctttcgtcggacacccattg 40370163  T
Q  464 acaagaacc 472  Q
    |||||||||    
T  40370164 acaagaacc 40370172  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 351
Target Start/End: Complemental strand, 1231417 - 1231083
Alignment:
Q  16 atcacaagtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgggatggcctccgcttctacagcccataaccaac 115  Q
    |||||| |||||||||| |||| ||| ||| |||||||||| || ||||||| ||||||||||||||| ||||  ||| ||||||||   |||||||| |    
T  1231417 atcacaggtttccaaaagcttaattttctataatccccaccaatcggaagtctcaagtacacaaacggaatgg-atccccttctacaattcataaccatc 1231319  T
Q  116 gccgcctttgccaaccaagaatcagcaacattaacactggtgaccatacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaagaaata 215  Q
      ||| |  || ||||| || |    |||||| ||||  || | ||||| ||| ||||| ||||||||||| || || |||||||| || ||||| || |    
T  1231318 aacgcttccgctaaccacgacttgttaacattgacaccagtaagcatacttttatgaaaattgacttttaaaccagacatctcctcgaacaaaagcaaaa 1231219  T
Q  216 ctgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatgtgtaagactcacctcccccattcggcc 315  Q
    | ||  |||| |||| ||  || |||||||||||||||||||||||||| || |  ||||| |||   |  ||||| || ||| |||||||  |||||||    
T  1231218 ccgcacgcatggaacacatgtttaaccaactcttttcacctataatgagggtatcgtcagcgaaccataggtgtgtgagcctctcctccccatttcggcc 1231119  T
Q  316 cacaccataaccttggaaaagttgtgcttccaccat 351  Q
     || |||||||| | | |||||||||||||||||||    
T  1231118 gaccccataaccgttgtaaagttgtgcttccaccat 1231083  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 435
Target Start/End: Complemental strand, 20356218 - 20356187
Alignment:
Q  404 agagggtccccttgacggagtcccctttccat 435  Q
    ||||||||||||||||||||||||||||||||    
T  20356218 agagggtccccttgacggagtcccctttccat 20356187  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 42829925 - 42829868
Alignment:
Q  23 gtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaa 80  Q
    |||||||||||||||| ||||| ||||||||||| || || || |||||||| |||||    
T  42829925 gtttccaaaaacttatcttcctcgaatccccaccaatgggcaggcccaagtaaacaaa 42829868  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 9709913 - 9709977
Alignment:
Q  224 atagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactgcaaatg 288  Q
    ||||| |||||||||||||||||||| ||||| ||||| |  |||| ||| || |||||||||||    
T  9709913 atagaccgcacattcaaccaactcttctcaccaataatcaaggtgtcatccgcgaactgcaaatg 9709977  T

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Target: scaffold0094 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 17279 - 17193
Alignment:
Q  196 ctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacctataatgagagtgttatcagcaaactg 282  Q
    ||||||||| ||||| || ||||||  |||||| |||||||||| ||||||||||||||| || || ||||||| ||| || |||||    
T  17279 ctcctcaaacaaaagcaacactgccctcatagaccgcacattcagccaactcttttcaccgatgattagagtgtcatcggcgaactg 17193  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 274
Target Start/End: Original strand, 17536264 - 17536377
Alignment:
Q  161 atacatttgtgaaagttgacttttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacctataa 260  Q
    |||| ||| ||||| || ||| |||| ||||| || |||||||| ||||| ||||||||  |||| ||||| ||||||  |||| |||||||||||| ||    
T  17536264 atacttttatgaaaattcactcttaaacccgagatgtcctcaaacaaaagcaatactgcacgcatggaacgtacattctgccaagtcttttcacctacaa 17536363  T
Q  261 tgagagtgttatca 274  Q
    ||| ||||| ||||    
T  17536364 tgatagtgtcatca 17536377  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 55430875 - 55430802
Alignment:
Q  182 tttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaactcttttcacc 255  Q
    ||||||| ||||| ||||||||| | ||| || || |||  |||||| ||||||||||||||||||||||||||    
T  55430875 tttaatctcgaaacctcctcaaaaagaagcaacaccgccctcatagatcgcacattcaaccaactcttttcacc 55430802  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 472
Target Start/End: Original strand, 17536463 - 17536578
Alignment:
Q  357 tcaatatattaaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcccctttccatcttaaactcatctgtcagaca 456  Q
    ||||| ||||||| || ||||| || | |||||||||||||| ||| ||||| |||| || ||| || ||||| |  |||||||||||||| ||  | ||    
T  17536463 tcaatgtattaaagccctcggctgccagcaaaaataagaacggcgacagaggatccctttaacgaaggcccctcttgatcttaaactcatccgtggggca 17536562  T
Q  457 tccattgacaagaacc 472  Q
    | ||||||||||||||    
T  17536563 ttcattgacaagaacc 17536578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 17536127 - 17536187
Alignment:
Q  23 gtttccaaaaacttattttcctagaatccccaccgataggaagtcccaagtacacaaacgg 83  Q
    ||||||||||||  | |||||||||||| ||||| ||||| |||| ||| |||||||||||    
T  17536127 gtttccaaaaacccaatttcctagaatctccaccaataggcagtctcaaatacacaaacgg 17536187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 32154075 - 32154151
Alignment:
Q  170 tgaaagttgacttttaatcccgaaatctcctcaaataaaagaaatactgccggcatagaacgcacattcaaccaact 246  Q
    |||||||| || || || |||||||| |||||||| ||||| || |||||  |||||  ||||||||||||||||||    
T  32154075 tgaaagttaaccttcaaccccgaaatatcctcaaacaaaagtaacactgctcgcatactacgcacattcaaccaact 32154151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 223550 - 223452
Alignment:
Q  367 aaaaccttcggcagctaacaaaaataagaacgacgatagagggtccccttgacggagtcccctttccatcttaaactcatctgtcagacatccattgac 465  Q
    ||||||||| |||||||||| ||| || ||||  || ||||| ||||||||||| || || || || | |||||||||||| ||  |||||||||||||    
T  223550 aaaaccttcagcagctaacagaaacaaaaacggagaaagaggatccccttgacgaaggcctctctcaagcttaaactcatcagtaggacatccattgac 223452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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