View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_210 (Length: 298)
Name: NF11737A_low_210
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_210 |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 16898937 - 16898640
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16898937 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
16898838 |
T |
|
| Q |
101 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16898837 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
16898738 |
T |
|
| Q |
201 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16898737 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
16898640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 18347452 - 18347155
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347452 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
18347353 |
T |
|
| Q |
101 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347352 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaata |
18347253 |
T |
|
| Q |
201 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18347252 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
18347155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 34689095 - 34689050
Alignment:
| Q |
172 |
aaattattgaccctaaagatatagtaatatggagaagacaaaattg |
217 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
34689095 |
aaattattgaccttctagatatagtaatatggagaagacaaaattg |
34689050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 13237039 - 13237336
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13237039 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
13237138 |
T |
|
| Q |
101 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13237139 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaata |
13237238 |
T |
|
| Q |
201 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13237239 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
13237336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 35 - 270
Target Start/End: Original strand, 41641583 - 41641818
Alignment:
| Q |
35 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41641583 |
ggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctctacaggatagacttcaacagaaaactgaagagtaa |
41641682 |
T |
|
| Q |
135 |
cggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
234 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
41641683 |
cggcagcaagtgattgagttcggtagtttctcatataaaattattgaccctaaagatatagtaatatggagaagacaaaattgtttcaagcaccgacaga |
41641782 |
T |
|
| Q |
235 |
acacgaagctctccttgtttcgtttcaaaaggggga |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
41641783 |
acacgaagctctccttgtttcgtttcaaaaggggga |
41641818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 198557 - 198854
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| ||||||| |
|
|
| T |
198557 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacgacgaaacctagaaatcgatcactgatccaatttgactacctct |
198656 |
T |
|
| Q |
101 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
200 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |||||| |
|
|
| T |
198657 |
acgggatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatatggtaata |
198756 |
T |
|
| Q |
201 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
198757 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
198854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 255
Target Start/End: Complemental strand, 282366 - 282205
Alignment:
| Q |
94 |
tacctctacaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatat |
193 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| |
|
|
| T |
282366 |
tacctctacgggatagacctcaacagaaaactgttgagtaacggcagcaagtgattgagttcagtagttcctcatagaaaattattgactctagagatat |
282267 |
T |
|
| Q |
194 |
agtaatatggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttc |
255 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| ||||| | ||||||||| |
|
|
| T |
282266 |
ggtaatatggagaagacaaaattgtttgaagcacgcacagaaccggaagcgccccttgtttc |
282205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 33064706 - 33064948
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgatttacgtaattggaagtaaccaattaggtttacggcgaaacctatcaatcgatcacggatccaatttgagtacctct |
100 |
Q |
| |
|
||||||| | ||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33064706 |
ttgagtgtgatttgaactattgatttatgtaattggaagtaaccaattaagattacggcgaaatctatcaatcgatcacggatccaatttgagtacctct |
33064805 |
T |
|
| Q |
101 |
acaggatagacttcaacagaaaactgaagagtaacggcagcaagtgattgagttcagtagtttctcatataaaattattgaccctaaagatatagtaata |
200 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
33064806 |
accggatagacttcaacagaaaactaaagagtaacgacaataagtgattgagttcagtagtttctcatataaattttttgaccctaaagatatagtaata |
33064905 |
T |
|
| Q |
201 |
tggagaagacaaaattgtttcaagcaccgacagaacacgaagc |
243 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
33064906 |
tggagaaggcaaaattgtttcaagcaccgacaaaacacgaagc |
33064948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 8385655 - 8385713
Alignment:
| Q |
240 |
aagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8385655 |
aagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatttga |
8385713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 4162364 - 4162412
Alignment:
| Q |
149 |
tgagttcagtagtttctcatataaaattattgaccctaaagatatagta |
197 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4162364 |
tgagttcagttgtttctcatataaaattattgaccctaaagatatagta |
4162412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 4174896 - 4174851
Alignment:
| Q |
149 |
tgagttcagtagtttctcatataaaattattgaccctaaagatata |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174896 |
tgagttcagttgtttctcatataaaattattgaccctaaagatata |
4174851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 298
Target Start/End: Original strand, 42350537 - 42350639
Alignment:
| Q |
196 |
taatatggagaagacaaaattgtttcaagcaccgacagaacacgaagctctccttgtttcgtttcaaaagggggaagacacgggttattcacatttcatt |
295 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||| || || | ||| |||||||||||||||| | |||| | | ||||||||||||| ||| |
|
|
| T |
42350537 |
taatattgagaagacaaaattgtctcaagcaccgaaagaatacaaaacgctctttgtttcgtttcaaaaaagaaaagataagagttattcacattttatt |
42350636 |
T |
|
| Q |
296 |
tga |
298 |
Q |
| |
|
||| |
|
|
| T |
42350637 |
tga |
42350639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 33420417 - 33420354
Alignment:
| Q |
1 |
ttgagtgcggtttgaactattgattta-cgtaattggaagtaaccaattaggtttacggcgaaa |
63 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
33420417 |
ttgagtgcggtttgaactattgatttatcgtaattggaagtaaccaattagatttacggcgaaa |
33420354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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