View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_212 (Length: 298)
Name: NF11737A_low_212
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_212 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7779458 - 7779307
Alignment:
| Q |
1 |
tataacttacatgcttactacttgattatgatttggtgcacttgtcaaacaaacaccaacaagtttttggcgttgttgttggggattcttgatatttcga |
100 |
Q |
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| T |
7779458 |
tataacttacaagcttactacttgattatgatttggtgcacttgtcaaacaaacaccaacaaatttttggcgttgttgttggggattgttgatatttcga |
7779359 |
T |
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| Q |
101 |
caaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag |
152 |
Q |
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| T |
7779358 |
caaggtaatcaatagaatttattttgtcaataattaggctaggttaggtaag |
7779307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 7779214 - 7779169
Alignment:
| Q |
246 |
cacgtccttctatcctcacttttaattgtgttaacacatagctccc |
291 |
Q |
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| T |
7779214 |
cacgtccttctatcctcacttttaattgtgttaacaaatagctccc |
7779169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 8713807 - 8713718
Alignment:
| Q |
63 |
gtttttggcgttgttgttggggattcttgatatttcgacaaagtaatcaatagagttta-ttttgtcaataattaggctaggttaggtaa |
151 |
Q |
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| T |
8713807 |
gtttttggcgtcattgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa |
8713718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 9065694 - 9065605
Alignment:
| Q |
63 |
gtttttggcgttgttgttggggattcttgatatttcgacaaagtaatcaatagagttta-ttttgtcaataattaggctaggttaggtaa |
151 |
Q |
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| T |
9065694 |
gtttttggcgtcattgtcggggattgttgatattacgacaaggtaatcggtagaatttatttttgtgagtaattaggttaggttaggtaa |
9065605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 13581803 - 13581725
Alignment:
| Q |
60 |
caagtttttggcgttgttgttggggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattagg |
138 |
Q |
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| T |
13581803 |
caagtttttgacgctgttgtccgggattgttgatatttcgaaaagttaatcaatagaatttattttgtgaataattagg |
13581725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 25664784 - 25664714
Alignment:
| Q |
82 |
gggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataattaggctaggttaggtaag |
152 |
Q |
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| T |
25664784 |
gggattgttgatatttcgacaaggtaatcggtagaatttattttgtgaataattagcttaggttaggtaag |
25664714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 25132608 - 25132538
Alignment:
| Q |
83 |
ggattcttgatatttcgacaaagtaatcaatagagtttatttt-gtcaataattaggctaggttaggtaag |
152 |
Q |
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| T |
25132608 |
ggattgttgatatttcaacaaggtaatcagtagaatttatttttgtgaataattagtttaggttaggtaag |
25132538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 21243329 - 21243412
Alignment:
| Q |
53 |
acaccaacaagtttttggcgttgttgttggggattcttgatatttcgacaaagtaatcaatagagtttattttgtcaataatta |
136 |
Q |
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| T |
21243329 |
acaccaacaagtttttggcattattatcgatgattattgatattttgacaagggaatcagtagaatttattttgtgaataatta |
21243412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 18932188 - 18932146
Alignment:
| Q |
55 |
accaacaagtttttggcgttgttgttggggattcttgatattt |
97 |
Q |
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| T |
18932188 |
accatcaagtttttggcgttgttgtcggggattgttgatattt |
18932146 |
T |
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