View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_216 (Length: 295)
Name: NF11737A_low_216
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_216 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 295
Target Start/End: Complemental strand, 19173742 - 19173472
Alignment:
| Q |
23 |
catctcgtttcaacaaaacttgagtatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgggcctaggaattttgaaagttaatg |
122 |
Q |
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| T |
19173742 |
catctcgtttcaacaaaacttgagcatttagtcttcctctcaagcaaggcagccgatatgaataatcaaatggtgggcctaggaattttgaaagttaatg |
19173643 |
T |
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| Q |
123 |
ttgaaactatcactcgtttgaaagtttcgcatggtggagataggaagtaagccccacaacacaaagtggcgaagaacaaatagaattttctacaaaagcc |
222 |
Q |
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| T |
19173642 |
ttgaaactatcactcgtttgaaagttttacacagtggagataggaagtaagccccacaacac--agtggcgaagaacaaatagaatttactacaaaagcc |
19173545 |
T |
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| Q |
223 |
ggctaacggaggtattcctacgtatgaaaacatagtaatgcagaccgttatagccgaaataggattcagtctg |
295 |
Q |
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| T |
19173544 |
ggctaacggaggtattcctacgtatgagaacatagtaatacagaccgttatagccgaaataggattcagtctg |
19173472 |
T |
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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 25565003 - 25565083
Alignment:
| Q |
163 |
taggaagtaagccccacaacacaaagtggcgaagaacaaatagaattttctacaaaagccggctaacggaggtattcctac |
243 |
Q |
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| T |
25565003 |
taggaagtaagccccacaacccaaagcggcgaagaacaaatagaatttgctataaaagccggctaacgggggtattcctac |
25565083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 46435461 - 46435501
Alignment:
| Q |
184 |
caaagtggcgaagaacaaatagaattttctacaaaagccgg |
224 |
Q |
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| T |
46435461 |
caaagcggcaaagaacaaatagaatttgctacaaaagccgg |
46435501 |
T |
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