View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_220 (Length: 293)
Name: NF11737A_low_220
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_220 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 56045299 - 56045570
Alignment:
| Q |
16 |
ataatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagcac |
115 |
Q |
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| T |
56045299 |
ataatatcacagcacaacaaattggatcaggttaccatggacttggaattggtgcattcacacttgattgggctggaatttcagcttatcatggaagccc |
56045398 |
T |
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| Q |
116 |
acttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacactttt |
215 |
Q |
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| T |
56045399 |
acttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttcatctatataattctacccgtatgttactggaggtttaacactttt |
56045498 |
T |
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| Q |
216 |
gatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaggtatgacacgacaaag |
287 |
Q |
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| T |
56045499 |
gatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggacacaagtatgacacgacaaag |
56045570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 72 - 268
Target Start/End: Original strand, 55706814 - 55707012
Alignment:
| Q |
72 |
ttcacacttgattgggctggaatttcagcttatcatggaagcacacttgttgcaccgtggacttccattgttaatgttggggttggatttatcatgttca |
171 |
Q |
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| T |
55706814 |
ttcacacttgactgcgcttggatttcagcttatcatggaagccctcttgttacaccgtggtcttccactgttaatgtttgggttggatttatcttgttca |
55706913 |
T |
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| Q |
172 |
tctatataattctacccgt-atgttactggaggtttaaca-cttttgatgctaggaagtttcctatattctctaatcagttgttcacgtcaagtggaca |
268 |
Q |
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| T |
55706914 |
tctatataattctatctataatgttagtggaagtttaacaccttttgatgctaggaagtttcctatactttctaatcagttgttcacatccagtggaca |
55707012 |
T |
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