View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_222 (Length: 292)

Name: NF11737A_low_222
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_222
NF11737A_low_222
[»] chr1 (18 HSPs)
chr1 (13-282)||(11351597-11351866)
chr1 (13-282)||(6784120-6784389)
chr1 (55-282)||(20639432-20639659)
chr1 (13-228)||(21515101-21515314)
chr1 (13-266)||(32988886-32989141)
chr1 (20-115)||(2536489-2536584)
chr1 (13-146)||(44839857-44839990)
chr1 (42-170)||(51080701-51080829)
chr1 (35-115)||(39648379-39648459)
chr1 (13-79)||(52823473-52823539)
chr1 (57-115)||(2114365-2114423)
chr1 (57-115)||(3601265-3601323)
chr1 (56-113)||(26418788-26418845)
chr1 (56-113)||(32108435-32108492)
chr1 (57-115)||(17321884-17321942)
chr1 (47-111)||(5811388-5811452)
chr1 (57-115)||(12539125-12539183)
chr1 (65-113)||(4179980-4180028)
[»] chr2 (5 HSPs)
chr2 (13-282)||(29894321-29894590)
chr2 (13-282)||(24543055-24543324)
chr2 (13-282)||(36364882-36365151)
chr2 (13-167)||(40287017-40287171)
chr2 (69-161)||(12555415-12555507)
[»] chr3 (17 HSPs)
chr3 (13-282)||(51976602-51976871)
chr3 (13-282)||(36684747-36685016)
chr3 (13-275)||(8705561-8705823)
chr3 (13-275)||(9057448-9057710)
chr3 (13-234)||(45736356-45736577)
chr3 (16-266)||(4978417-4978668)
chr3 (51-195)||(49758956-49759100)
chr3 (43-167)||(38998864-38998988)
chr3 (13-110)||(47165345-47165442)
chr3 (86-242)||(26390800-26390956)
chr3 (13-167)||(37796562-37796716)
chr3 (56-113)||(32073607-32073664)
chr3 (68-124)||(20916409-20916465)
chr3 (68-124)||(20925371-20925427)
chr3 (13-80)||(26390564-26390631)
chr3 (57-115)||(10346527-10346585)
chr3 (66-114)||(25131086-25131134)
[»] chr8 (5 HSPs)
chr8 (13-282)||(18481075-18481344)
chr8 (13-146)||(26440784-26440917)
chr8 (43-244)||(32536156-32536357)
chr8 (13-115)||(7251115-7251217)
chr8 (44-113)||(11911395-11911464)
[»] chr4 (11 HSPs)
chr4 (13-282)||(43989258-43989526)
chr4 (13-256)||(19315890-19316132)
chr4 (13-109)||(43813171-43813267)
chr4 (18-115)||(1394134-1394232)
chr4 (56-113)||(13200849-13200906)
chr4 (56-113)||(47783000-47783057)
chr4 (71-115)||(9633067-9633111)
chr4 (57-115)||(35096917-35096975)
chr4 (67-115)||(1479285-1479333)
chr4 (57-115)||(6969618-6969676)
chr4 (73-115)||(17283581-17283623)
[»] chr6 (8 HSPs)
chr6 (13-282)||(942535-942804)
chr6 (13-115)||(4513081-4513183)
chr6 (42-113)||(19047098-19047169)
chr6 (56-113)||(15950809-15950866)
chr6 (42-113)||(21698719-21698790)
chr6 (13-115)||(12125825-12125927)
chr6 (15-113)||(13757503-13757601)
chr6 (56-113)||(30063666-30063723)
[»] chr5 (12 HSPs)
chr5 (13-209)||(41197356-41197552)
chr5 (13-284)||(36779403-36779671)
chr5 (13-143)||(30376427-30376557)
chr5 (14-170)||(34905529-34905685)
chr5 (13-65)||(12378608-12378660)
chr5 (13-158)||(12714847-12714992)
chr5 (13-115)||(12776078-12776180)
chr5 (43-159)||(14856952-14857068)
chr5 (22-115)||(29985437-29985530)
chr5 (67-115)||(34530-34578)
chr5 (42-113)||(19609142-19609213)
chr5 (13-74)||(39714874-39714935)
[»] chr7 (11 HSPs)
chr7 (13-282)||(23820365-23820634)
chr7 (13-275)||(24808771-24809014)
chr7 (13-146)||(21118373-21118505)
chr7 (11-115)||(40901803-40901907)
chr7 (57-116)||(20492488-20492547)
chr7 (56-113)||(29526837-29526894)
chr7 (57-113)||(10325110-10325166)
chr7 (67-115)||(12980739-12980787)
chr7 (56-113)||(664990-665047)
chr7 (56-113)||(21588151-21588208)
chr7 (61-161)||(42029863-42029963)
[»] scaffold0041 (1 HSPs)
scaffold0041 (11-115)||(48111-48215)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 11351597 - 11351866
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351597 acatcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 11351696  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351697 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 11351796  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11351797 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgaagtcca 11351866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 6784389 - 6784120
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||||||||| || ||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6784389 acattatcataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagt 6784290  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  |||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  6784289 tctgaaaataacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagactt 6784190  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    ||||||||||||||||||||||||||||||| |||||| || || ||||||||||||||||||| |||||    
T  6784189 gcaatccaaaacaaaatcaacattgtcataacgaagattagtcacccattgtagtgccgtgtgaagtcca 6784120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 55 - 282
Target Start/End: Complemental strand, 20639659 - 20639432
Alignment:
Q  55 ctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctaaataa 154  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||  ||| |||||||||||||||| |||||||||| |||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  155 tacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatgaagatcagc 254  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatgaagatcagc 20639460  T
Q  255 catccattgtagtgccgtgtgatgtcca 282  Q
    || ||||||||||||| ||||| |||||    
T  20639459 cacccattgtagtgccatgtgaagtcca 20639432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 21515314 - 21515101
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagt 21515217  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| |||| ||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21515216 tctgaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 21515117  T
Q  213 gcaatccaaaacaaaa 228  Q
    ||||||||||||||||    
T  21515116 gcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 32988886 - 32989141
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattga----actcgacatga 108  Q
    ||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||    |||||||||||||||||  |    |||||||||||    
T  32988886 acatcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcgaaa--attggcttgcctcctatatatataactcgacatga 32988983  T
Q  109 gagttctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacag 208  Q
    |||||||  ||  |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||     
T  32988984 gagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaacgttcaacaacat 32989083  T
Q  209 acttgcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 266  Q
    ||||| ||||| |||||||||| |||| |||||||||||||| | ||| |||||||||    
T  32989084 acttggaatccgaaacaaaatccacatcgtcataatgaagattaaccacccattgtag 32989141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 2536489 - 2536584
Alignment:
Q  20 cataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 2536584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 146
Target Start/End: Original strand, 44839857 - 44839990
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  44839857 acattatcataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagt 44839956  T
Q  113 tctagaaactacaatcgaacaactgtctacaagc 146  Q
    |||  ||||||   || ||||| |||||||||||    
T  44839957 tctgaaaactattgtcaaacaattgtctacaagc 44839990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 51080701 - 51080829
Alignment:
Q  42 agatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 141  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  ||||||||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtcta 51080800  T
Q  142 caagcctaaataatacaacctagttcact 170  Q
    || ||   |||||||||||| ||||||||    
T  51080801 catgcagtaataatacaaccaagttcact 51080829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 115
Target Start/End: Original strand, 39648379 - 39648459
Alignment:
Q  35 tagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||| ||||| || ||||| ||||||||| |||||||||    
T  39648379 tagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttct 39648459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 52823473 - 52823539
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccat 79  Q
    |||||||| ||||| | |||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  52823473 acatcatcgtaaacataggagttagtatgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 2114423 - 2114365
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    ||||||||| |||||||||||||| |||| | |||| ||||||||||||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttct 2114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 3601265 - 3601323
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || ||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttct 3601323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 17321942 - 17321884
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || ||||| |||| ||| ||||||||||| ||||||||||||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttct 17321884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 5811452 - 5811388
Alignment:
Q  47 gggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagag 111  Q
    ||||| || ||||||||| |||||| |||||||| | ||| |||||||| |||||||||||||||    
T  5811452 gggctgccttagctaattaatgagctaccccatttgtttgtctcctattaaactcgacatgagag 5811388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 12539183 - 12539125
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || ||||| | || ||| ||||||||||| ||||||||||||||||||||||    
T  12539183 agctaactcgtgagctatcctatttgcttgcctcctgttgaactcgacatgagagttct 12539125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 4180028 - 4179980
Alignment:
Q  65 catgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  4180028 catgagcaacctcatttgcttgcctcctaataaactcgacatgagagtt 4179980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 29894321 - 29894590
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 29894420  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894421 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 29894520  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  29894521 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtgaagtcca 29894590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 24543324 - 24543055
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagt 24543225  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543224 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 24543125  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  24543124 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgtcgtgtgaagtcca 24543055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 36365151 - 36364882
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  36365151 acatcaccataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagt 36365052  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  |||  ||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36365051 tctgaaaatgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 36364952  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||    
T  36364951 ggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcatgtgaagtcca 36364882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 40287017 - 40287171
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||| |||| |||||||||||    
T  40287017 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagt 40287116  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttc 167  Q
    | |  ||||||   |  |||||||||||||| ||   |||||||||||| |||||    
T  40287117 tttgaaaactatcctgaaacaactgtctacatgcagtaataatacaaccaagttc 40287171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 12555415 - 12555507
Alignment:
Q  69 agcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctaaataatacaacc 161  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||  |||||   ||  ||||||||||||||| |  | |||||||||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaatcaaatataatacaacc 12555507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 51976871 - 51976602
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51976871 acatcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagt 51976772  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976771 tctgaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 51976672  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  51976671 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtcca 51976602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 36685016 - 36684747
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagt 36684917  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36684916 tctgaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaactt 36684817  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||    
T  36684816 gcaatccaaaacaaaatcaacattgtcataatgaagatcagtcacccattgtagtgccgtgtgaagtcca 36684747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 8705823 - 8705561
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 8705724  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  8705723 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 8705624  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 275  Q
    | ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  8705623 ggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 8705561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 9057710 - 9057448
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 9057611  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||| |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  9057610 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 9057511  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtg 275  Q
    | ||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||||||    
T  9057510 ggaatccaaaacaaaatcaacatggtcatagtgaagatcagccacccattgtagcgccgtgtg 9057448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 45736577 - 45736356
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||  ||||||||||||||||||||||||||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||| || |||||| |||||||||||||||||| ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||    
T  45736477 tctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaactt 45736378  T
Q  213 gcaatccaaaacaaaatcaaca 234  Q
    | ||||||||||||||||||||    
T  45736377 gaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 4978417 - 4978668
Alignment:
Q  16 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||||||| | | |||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||| ||| |||| |||||||||||||||||||    
T  4978417 tcatcataaatgcgcgagttagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttct 4978516  T
Q  116 agaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttc-aacaacagacttgc 214  Q
      ||| || || ||||||| || |||||||||  ||||||||||||||||| |||  ||||||||||||||||||||||| |||| ||||||| | |||     
T  4978517 gaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatcacctaggtttgaattaaaacgttcaaacaacatatttgg 4978616  T
Q  215 aatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag 266  Q
    ||||||||||||||| |||||||||| |||||||||||| |||| |||||||    
T  4978617 aatccaaaacaaaattaacattgtcagaatgaagatcagacatctattgtag 4978668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 49758956 - 49759100
Alignment:
Q  51 taccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctaa 150  Q
    ||||||||  ||||||||||||| |||||| |||||||||||||||||| |||||| ||||||||  ||| ||||| | | |||| | ||||||| || |    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  151 ataatacaacctagttcactgctatcacctaggtttgaattaaaa 195  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaa 49759100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 38998988 - 38998864
Alignment:
Q  43 gatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 142  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |  ||||||   |  |||||||||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctac 38998889  T
Q  143 aagcctaaataatacaacctagttc 167  Q
    | |||  |||||||||||| |||||    
T  38998888 aggccgtaataatacaaccaagttc 38998864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 47165345 - 47165442
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgaga 110  Q
    |||||| | |||||||||||| ||||||||||||||||| || |  |||||||| |||||||||||||| |||||||||||||||||||||| |||||    
T  47165345 acatcaccgtaaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgacgtgaga 47165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 86 - 242
Target Start/End: Original strand, 26390800 - 26390956
Alignment:
Q  86 gcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtt 185  Q
    |||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||| |  ||||| |||||||||||||| |||||  |||||||    
T  26390800 gcctcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtt 26390899  T
Q  186 tgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 242  Q
    | | |||||| | || ||||  | |||| |||||||| |||| || ||||| |||||    
T  26390900 tcagttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 37796716 - 37796562
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| |||||||  ||||||||| |||| |||||||||||||| ||||||||||||| ||    
T  37796716 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgt 37796617  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttc 167  Q
    | |  ||||||   |  |||||||||||||| |||  |||||||||||| |||||    
T  37796616 tttgaaaactatcctgaaacaactgtctacaggccgtaataatacaaccaagttc 37796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 20916465 - 20916409
Alignment:
Q  68 gagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactac 124  Q
    |||||||| |||| |||||||||||||||||||| |||| ||||||||  |||||||    
T  20916465 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 20925427 - 20925371
Alignment:
Q  68 gagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactac 124  Q
    |||||||| |||| |||||||||||||||||||| |||| ||||||||  |||||||    
T  20925427 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20925371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 26390564 - 26390631
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccatt 80  Q
    |||| |||||||||||| |||||||||||||| ||| ||||    |||||||||||||||| ||||||    
T  26390564 acattatcataaacgtgagagttagcatgagacgggactacatgtgctaattcatgagcgatcccatt 26390631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 10346527 - 10346585
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || |||||||||| ||| ||||||||||| |||||||| ||||| |||||||    
T  10346527 agctaactcgtgagcgaccctattcgcttgcctcctgttgaactctacatgcgagttct 10346585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 25131086 - 25131134
Alignment:
Q  66 atgagcgaccccattggcttgcctcctattgaactcgacatgagagttc 114  Q
    |||||||||||||||  ||| | | ||||||||||||||||||||||||    
T  25131086 atgagcgaccccattaacttactttctattgaactcgacatgagagttc 25131134  T

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Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 18481344 - 18481075
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagt 18481245  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481244 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 18481145  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  18481144 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtcca 18481075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 26440917 - 26440784
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||    
T  26440917 acattatcataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagt 26440818  T
Q  113 tctagaaactacaatcgaacaactgtctacaagc 146  Q
    |||| ||||||   || |||||||||||||||||    
T  26440817 tctaaaaactattgtcaaacaactgtctacaagc 26440784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 32536156 - 32536357
Alignment:
Q  43 gatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 142  Q
    |||||||||||||||||||||||| |||||||||||||  ||||  | | |||||||||||||| |||||||   ||| ||||| | | ||| ||| |||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  143 aagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 242  Q
    |||||| |||||||||||||||||||||  ||||  |||||||||||| |||  | || |||| | ||||| |||||||| ||||||| ||||  |||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  243 at 244  Q
    ||    
T  32536356 at 32536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 7251217 - 7251115
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||| | ||| || |||||||||||||||||||| ||| |||| |||||| || |||||||| ||||||||||||||||||||||| |||||    
T  7251217 acattatcataatcatggaagctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagt 7251118  T
Q  113 tct 115  Q
    |||    
T  7251117 tct 7251115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 11911395 - 11911464
Alignment:
Q  44 atggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||| ||| |||||| || || | ||||||||| | || |||||||||||||||||||||||||||    
T  11911395 atggggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagtt 11911464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 43989258 - 43989526
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgt 43989357  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||| ||| ||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  43989358 tctaaaaa-tacaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaactt 43989456  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  43989457 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgtcgtgtgaagtcca 43989526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 19315890 - 19316132
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||| |||||||| || ||| || ||||||||||   |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  19315890 acataatcataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagt 19315989  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  |||||   | | ||||||| ||||||||| |  ||||| |||||||| ||||| |||||| |||  ||||| ||||| || || |||||   |||    
T  19315990 tctgaaaactgttaacaaacaactatctacaagcatgtataatgcaacctagctcactactatcatctacatttgacttaaagtgatctacaac-ttctt 19316088  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagcca 256  Q
    ||| | || | ||||||||||||| ||||| | |||||| ||||    
T  19316089 gcagtgcagagcaaaatcaacattatcatactaaagatccgcca 19316132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 43813171 - 43813267
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgag 109  Q
    ||||||||| ||||| | ||| ||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| || |||||||||||||||||||    
T  43813171 acatcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacatgag 43813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 1394232 - 1394134
Alignment:
Q  18 atcataaacgtgggagttagcatgagatgggg-ctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| | ||||||| |||||| |||||||| ||||    |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  1394232 atcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttct 1394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||||| |||||||| ||| |||| |||||||||||| |||||||||||||||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 9633111 - 9633067
Alignment:
Q  71 cgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttct 9633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 35096975 - 35096917
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || ||||| |||| ||| |||||||| |||||||||||||||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttct 35096917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 1479285 - 1479333
Alignment:
Q  67 tgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||| |||||||||  ||||||||||||||||||||| |||||||||||    
T  1479285 tgagtgaccccatttacttgcctcctattgaactcgatatgagagttct 1479333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 6969676 - 6969618
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||| || ||||||||||||||  ||| |||| ||||||| ||||||||||||||||    
T  6969676 agctaactcgtgagcgaccccatttacttacctcttattgaaatcgacatgagagttct 6969618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 17283581 - 17283623
Alignment:
Q  73 accccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||||| | ||||||||||||||||||||||| ||||||||    
T  17283581 accccattcgtttgcctcctattgaactcgacataagagttct 17283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 942804 - 942535
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||| |||||||||||| ||||||||||||||| |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  942804 acatcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagt 942705  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  942704 tctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagactt 942605  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  942604 ggaatccaaaacaaaatcaacattgtcataatgaagatcagccacccattgtagtgccgtgtgaagtcca 942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 4513183 - 4513081
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4513183 acattatcataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagt 4513084  T
Q  113 tct 115  Q
    |||    
T  4513083 tct 4513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 19047169 - 19047098
Alignment:
Q  42 agatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||| |||||||||| |||||||| ||||||||| |||| |||||||||||||| |||||||||||||||||    
T  19047169 agatagggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagtt 19047098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 21698790 - 21698719
Alignment:
Q  42 agatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||| |||| || |||||||  ||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  21698790 agatgtggctgccttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtt 21698719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 12125927 - 12125825
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||| || ||| || |||||||||||| ||||||    |||||||||||||| ||  |||| ||||||||| ||||||| |  |||||||| |    
T  12125927 acatcatcatagacatggaagctagcatgagatgaggctacatgtgctaattcatgagccacttcattagcttgcctcatattgaattgaacatgagaat 12125828  T
Q  113 tct 115  Q
    |||    
T  12125827 tct 12125825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 13757503 - 13757601
Alignment:
Q  15 atcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||  | |||| ||| || | |||| |||| |||||||||||| ||||||||| |||| | |||| || |||| ||||| |||||||||||    
T  13757503 atcatcataaaaattggagctaggattatatggagctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagtt 13757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 30063666 - 30063723
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||  ||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  30063666 tagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtt 30063723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 41197356 - 41197552
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagt 41197455  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 209  Q
    |||  ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41197456 tctgaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 41197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 36779403 - 36779671
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||| ||||||||| || ||| ||||||| |||||||||||||| |||||| ||| | ||||||||||||||||||| |||||||||||||||    
T  36779403 acatcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagt 36779501  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||   || ||||| | |||||||| |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||| ||||||||| ||||||    
T  36779502 tctg--aattacaaccaaacaactgcctacaagccttaataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagactt 36779599  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtccatc 284  Q
    | ||||||||| ||||||||||| || ||| ||||||||| ||||||||||||| | ||||||| |||||||    
T  36779600 ggaatccaaaataaaatcaacatggttatagtgaagatcaaccatccattgtagcgtcgtgtgaagtccatc 36779671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 30376427 - 30376557
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  30376427 acatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagt 30376526  T
Q  113 tctagaaactacaatcgaacaactgtctaca 143  Q
    | |  ||| || ||||||||||||| |||||    
T  30376527 tttgaaaattataatcgaacaactgcctaca 30376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 34905685 - 34905529
Alignment:
Q  14 catcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||||| ||||| |||||||||||||||||| |||||||    |||||||||||||||||| |||||| ||| |||||||||||||| |||  ||||||    
T  34905685 catcatcgtaaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagtt 34905586  T
Q  114 ctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcact 170  Q
    ||  ||||||  | | ||||||||||||||||| |  |||| ||||||||| |||||    
T  34905585 ctgaaaactattaacaaacaactgtctacaagcatgtataacacaacctagctcact 34905529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 12378608 - 12378660
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattc 65  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 12714847 - 12714992
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12714847 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12714946  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataataca 158  Q
    |||  ||||||   || ||||||  ||||||||| || ||||||||    
T  12714947 tctgaaaactattgtcaaacaacaatctacaagcatatataataca 12714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 12776078 - 12776180
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12776078 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12776177  T
Q  113 tct 115  Q
    |||    
T  12776178 tct 12776180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 14856952 - 14857068
Alignment:
Q  43 gatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 142  Q
    ||||||| | || |||||||||||||||||| | |||| | ||||||| |||| ||||||||||||||||| |  || ||   || |||||||||||||     
T  14856952 gatggggatgccttagctaattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagttttgaaagctttcatggaacaactgtctag 14857051  T
Q  143 aagcctaaataatacaa 159  Q
    |||| | ||||||||||    
T  14857052 aagcattaataatacaa 14857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 29985530 - 29985437
Alignment:
Q  22 taaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||| ||||||| || |||||  | ||||||||  |||||| || ||| ||||| |||| ||||| || |||||||||||||||||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttct 29985437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 34578 - 34530
Alignment:
Q  67 tgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||||||  |||||||||| ||||||| |||||||||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttct 34530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 19609142 - 19609213
Alignment:
Q  42 agatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||| ||||||  |||||||  ||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  19609142 agatgtggctactttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtt 19609213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 39714935 - 39714874
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgac 74  Q
    ||||||||||||||||| ||| ||  || || ||||||||| ||| ||||||||||||||||    
T  39714935 acatcatcataaacgtgagagctaatataaggtggggctacactaactaattcatgagcgac 39714874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 23820634 - 23820365
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||| ||||||| |||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |||  ||| ||||||| |||||||| |||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  23820534 tctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagactt 23820435  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtagtgccgtgtgatgtcca 282  Q
    | ||||||||||||||| ||||| |||||||||||||||||||| ||||||||  ||| ||||| |||||    
T  23820434 ggaatccaaaacaaaattaacatggtcataatgaagatcagccacccattgtaacgccatgtgaagtcca 23820365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 24808771 - 24809014
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    ||||||||||||||||||    |||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |        ||    
T  24808771 acatcatcataaacgtggc---tagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaactag--------gt 24808859  T
Q  113 tctagaaactacaatcgaacaactgtctacaagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 212  Q
    |         |||| | |||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  24808860 t---------acaaccaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagactt 24808950  T
Q  213 gcaatccaaaacaaaatcaacattgtcataatgaagatcagccatccattgtag-tgccgtgtg 275  Q
    | |||| |||||||||||||||| |||||| |||||||  | || ||||||||| |||||||||    
T  24808951 ggaatctaaaacaaaatcaacatggtcatagtgaagatttgacacccattgtagctgccgtgtg 24809014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 21118505 - 21118373
Alignment:
Q  13 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 112  Q
    |||| ||||||||||| |||| |||||  |||||| ||||||||||||||  |||||| |||| |||| |||||||||||||||||||||||||||||||    
T  21118505 acattatcataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagt 21118407  T
Q  113 tctagaaactacaatcgaacaactgtctacaagc 146  Q
    |||  ||||||   || |||||||||||||||||    
T  21118406 tctgaaaactattgtcaaacaactgtctacaagc 21118373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 40901803 - 40901907
Alignment:
Q  11 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgaga 110  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| | |||||||||||| ||||||||||||||    
T  40901803 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 40901902  T
Q  111 gttct 115  Q
    |||||    
T  40901903 gttct 40901907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 20492547 - 20492488
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttcta 116  Q
    ||||||||| |||||||||| ||| |||||||||||||| ||||||| ||||||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttcta 20492488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||||||||||||| ||| |||| |||||||||||| | |||||||||||||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  57 agctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    |||||| |||||||||||| |||| | |||||||||||| |||||||||||||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 12980787 - 12980739
Alignment:
Q  67 tgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 115  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||||||    
T  12980787 tgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttct 12980739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 664990 - 665047
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||||||||||| || ||| |||| ||||| |||||| | |||||||||||||||||    
T  664990 tagctaattcatgtgcaacctcatttgcttgtctcctaataaactcgacatgagagtt 665047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 21588151 - 21588208
Alignment:
Q  56 tagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagtt 113  Q
    ||||||||||||| || ||| |||| | |||||||||| | |||||||||||||||||    
T  21588151 tagctaattcatgtgcaacctcatttgattgcctcctaataaactcgacatgagagtt 21588208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 42029863 - 42029963
Alignment:
Q  61 aattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctaaataatacaac 160  Q
    |||||| |||||||||||||   ||||||| |||| || || ||||||||||| | |||||||  || ||||| ||||||| | ||  ||||||||||||    
T  42029863 aattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtctatatgcagaaataatacaac 42029962  T
Q  161 c 161  Q
    |    
T  42029963 c 42029963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 48215 - 48111
Alignment:
Q  11 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgaga 110  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| | |||||||||||| ||||||||||||||    
T  48215 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 48116  T
Q  111 gttct 115  Q
    |||||    
T  48115 gttct 48111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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