View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_223 (Length: 292)
Name: NF11737A_low_223
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_223 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 37129341 - 37129099
Alignment:
| Q |
6 |
aggaatatggtttttgaaatataaatatgagatgacgtttttggcannnnnnnnn-------aattagtgttgcagggtgtaaccagaaataaaggatgt |
98 |
Q |
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| T |
37129341 |
aggaatatggtttttgaaatataaatatgatatgacgtttttggcatttttttttgtttttgaattagtgttggagggtgtaaccagaagtaaaggatgt |
37129242 |
T |
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| Q |
99 |
aaatagcacaaatgagaatatattttgtgtttagacggtttcatgtatccttnnnnnnnnntgatgaaaattgctcttcttccttnnnnnnntgttcact |
198 |
Q |
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| T |
37129241 |
aaatagcacaaatgggaatatattttgtgttcagacggtttcatgaatccttaaaaaaaaatgatgaaaattactctttttcctt-aaaaaatgttcact |
37129143 |
T |
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| Q |
199 |
ttcacgtaaattgattaaaatatatccatgtgagttaattcatg |
242 |
Q |
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| T |
37129142 |
tccacgtgaattaattaaaatatctccacgtgagttaattcatg |
37129099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 37121166 - 37121080
Alignment:
| Q |
61 |
aattagtgttgcagggtgtaaccagaaataaaggatgtaaatagcacaaatgagaat--atattttgtgtttagacggtttcatgta |
145 |
Q |
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| T |
37121166 |
aattagtattgaagggtgtaaccagaaataaaggatataaatagcacaaatgagaatatatattttgtgttgagacggtttaatgta |
37121080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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