View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_226 (Length: 291)

Name: NF11737A_low_226
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_226
NF11737A_low_226
[»] chr1 (10 HSPs)
chr1 (85-203)||(31771310-31771428)
chr1 (85-207)||(7608318-7608440)
chr1 (139-232)||(7608224-7608317)
chr1 (139-232)||(31771212-31771305)
chr1 (227-285)||(7608097-7608155)
chr1 (227-283)||(31771087-31771143)
chr1 (85-142)||(1721556-1721613)
chr1 (75-142)||(17726023-17726089)
chr1 (84-129)||(32440659-32440704)
chr1 (84-142)||(22368196-22368254)
[»] scaffold0152 (1 HSPs)
scaffold0152 (85-181)||(10195-10291)
[»] chr3 (6 HSPs)
chr3 (80-159)||(19766009-19766088)
chr3 (17-72)||(11427105-11427160)
chr3 (74-129)||(11394007-11394062)
chr3 (96-181)||(31687881-31687966)
chr3 (85-129)||(46233973-46234017)
chr3 (79-142)||(52130783-52130846)
[»] chr2 (5 HSPs)
chr2 (71-142)||(997806-997877)
chr2 (84-159)||(4453777-4453852)
chr2 (84-129)||(9208569-9208614)
chr2 (80-119)||(7161811-7161850)
chr2 (75-138)||(3625169-3625234)
[»] chr4 (5 HSPs)
chr4 (75-142)||(32651267-32651334)
chr4 (75-159)||(38467690-38467775)
chr4 (87-159)||(3649873-3649945)
chr4 (77-140)||(41810163-41810226)
chr4 (85-120)||(26720237-26720272)
[»] scaffold0003 (2 HSPs)
scaffold0003 (85-181)||(36966-37062)
scaffold0003 (80-120)||(43199-43239)
[»] chr6 (3 HSPs)
chr6 (74-119)||(31444760-31444805)
chr6 (80-120)||(27444122-27444162)
chr6 (79-127)||(33054175-33054223)
[»] scaffold0014 (1 HSPs)
scaffold0014 (78-120)||(32608-32650)
[»] chr8 (2 HSPs)
chr8 (85-159)||(44663663-44663737)
chr8 (85-159)||(35348991-35349066)
[»] chr7 (2 HSPs)
chr7 (80-129)||(16262692-16262741)
chr7 (85-127)||(21820186-21820228)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 203
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  185 tgtttgccattttttcctc 203  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 85 - 207
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 184  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  185 tgtttgccattttttcctccttt 207  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  139 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 232  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  139 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 232  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7608155 - 7608097
Alignment:
Q  227 tgtattgtaaatgataaccaattaatgttattggtttccaataaccctcctttctctcc 285  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctcc 7608097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 31771143 - 31771087
Alignment:
Q  227 tgtattgtaaatgataaccaattaatgttattggtttccaataaccctcctttctct 283  Q
    |||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctct 31771087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  75 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  84 aatctaacttattcctaatcctagttaacactccaaataacactcc 129  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  84 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 181
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 181  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 80 - 159
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  80 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 159  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 11427160 - 11427105
Alignment:
Q  17 acatcattttcatagtatcaagatgcaaaactaattacattttgcaatcaggtaat 72  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  11427160 acatcattttcatggtatcaagatgcaaaactaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  74 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 129  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  96 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 181  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcc 129  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  79 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  71 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  84 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 159  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  84 aatctaacttattcctaatcctagttaacactccaaataacactcc 129  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  80 atctaatctaacttattcctaatcctagttaacactccaa 119  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  75 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 138  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  75 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  75 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 159  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  87 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 159  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  77 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 140  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 120
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaa 120  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 181  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  80 atctaatctaacttattcctaatcctagttaacactccaaa 120  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  74 tatctaatctaatctaacttattcctaatcctagttaacactccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  80 atctaatctaacttattcctaatcctagttaacactccaaa 120  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  79 aatctaatctaacttattcctaatcctagttaacactccaaataacact 127  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  78 taatctaatctaacttattcctaatcctagttaacactccaaa 120  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 159  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 159  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  80 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 129  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 127
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  85 atctaacttattcctaatcctagttaacactccaaataacact 127  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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