View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_228 (Length: 289)
Name: NF11737A_low_228
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_228 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 1772790 - 1772526
Alignment:
| Q |
10 |
atggacatcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctttggaaaatgctccttcggaggaagttcaagatgt |
109 |
Q |
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| T |
1772790 |
atggacatcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctt---------------cggaggaagttcaagatgt |
1772706 |
T |
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| Q |
110 |
atctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaa |
209 |
Q |
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| T |
1772705 |
atctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaa |
1772606 |
T |
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| Q |
210 |
aatgacaaggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaaca |
289 |
Q |
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| T |
1772605 |
aatgacaaggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaaca |
1772526 |
T |
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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 2534233 - 2534349
Alignment:
| Q |
77 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtc |
176 |
Q |
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|||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||| || || |||||||| ||||||| || ||||||| | |
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| T |
2534233 |
ggaaaacgcttcttcagaggaagttcaagatgtatctaaagataatacagaagaaactactgaccccacggataccaaagagattcctgttgaggatgcc |
2534332 |
T |
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| Q |
177 |
aaagagattcctgttga |
193 |
Q |
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| T |
2534333 |
aaagagattcatgttga |
2534349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 2525689 - 2525604
Alignment:
| Q |
77 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattc |
162 |
Q |
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||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
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| T |
2525689 |
ggaaaatgctcattctgaggaaattcaagatgaatctaaagataattcagaagaaacggctgagcctaccgataccaaagagattc |
2525604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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