View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_23 (Length: 493)
Name: NF11737A_low_23
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_23 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| |
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| [»] chr4 (6 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
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| [»] scaffold0079 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0002 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Original strand, 183061 - 183534
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183061 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
183160 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183161 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
183260 |
T |
|
| Q |
220 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183261 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
183360 |
T |
|
| Q |
320 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183361 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
183460 |
T |
|
| Q |
420 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183461 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
183534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 494455 - 493982
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494455 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
494356 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494355 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
494256 |
T |
|
| Q |
220 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494255 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
494156 |
T |
|
| Q |
320 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494155 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
494056 |
T |
|
| Q |
420 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
494055 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
493982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 18192117 - 18191643
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18192117 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
18192018 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18192017 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
18191918 |
T |
|
| Q |
220 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
319 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191917 |
cgcccctaggtattctgtacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
18191818 |
T |
|
| Q |
320 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctcta-ccccttcttaccctgaaaaaacagggggcaccttgtgttcttg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191817 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctacccccttcttaccctgaaaaaacagggggcaccttgtgttcttg |
18191718 |
T |
|
| Q |
419 |
aaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18191717 |
aaccgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
18191643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 16337238 - 16337426
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| |
|
|
| T |
16337238 |
catcaggtcaccaacttccttaaccttcctgcactgggcaggcgtcaacccccatacatggtcttactactttgcagagacctgtatttttgataaacag |
16337337 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
208 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
16337338 |
tcacttaagcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
16337426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 50525982 - 50525850
Alignment:
| Q |
26 |
gtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacagtcgccc |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
50525982 |
gtcaccaacttccttaaccttccggcactggacagacgtcagcccccatacatggtcttacgactttgcgaagacctgtgtttttgataaacagtcgccc |
50525883 |
T |
|
| Q |
126 |
gggcctggtcactgcgaccccctttgtgaggag |
158 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |
|
|
| T |
50525882 |
gggcctggtcactgcgaccccttttatgaggag |
50525850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 29443344 - 29443302
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggc |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29443344 |
catcaggtcaccaacttccttaaccttccggcactgggcaggc |
29443302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 42247894 - 42247850
Alignment:
| Q |
159 |
gcaccccttctcccgaagttacggggctattttgccgagttcctt |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42247894 |
gcaccccttctcccgaagttacggggtcattttgccgagttcctt |
42247850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 20 - 493
Target Start/End: Complemental strand, 34659454 - 34658981
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34659454 |
catcgggtcaccaacttccttaaccttccggcactaggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgcttttggtaaacag |
34659355 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
219 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34659354 |
tcgccagggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccaagttccttagagagagttgtctcg |
34659255 |
T |
|
| Q |
220 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659254 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtaccattttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
34659155 |
T |
|
| Q |
320 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659154 |
ttacttcagcgccggagcgcctcgtactcgaatcttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
34659055 |
T |
|
| Q |
420 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34659054 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaacaagaggtagtacaggaatattc |
34658981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Complemental strand, 8174997 - 8174936
Alignment:
| Q |
365 |
cattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttgaaccgataa |
427 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||| ||| |||||||||| ||||||||||||| |
|
|
| T |
8174997 |
cattttctctatcccttcttaccctacaaaaacaaggg-caccttgtgtgcttgaaccgataa |
8174936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Complemental strand, 14404984 - 14404532
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404984 |
catcaggtcaccaacttccttaaccttccggcactgggcagacgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
14404885 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404884 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagagagagttgtctcg |
14404785 |
T |
|
| Q |
220 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404784 |
cgcccctaggtattctctacctacccacctgtgtcggtttcgggtacaggtacccttttgtttaaggtcgttcgagcttttcttgggagtatggcatcaa |
14404685 |
T |
|
| Q |
320 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggaggcattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404684 |
ttacttcagcgccggagcgcctcgtactcgaaccttggctggagccattttctctaccccttcttaccctgaaaaaacagggggcaccttgtgttcttga |
14404585 |
T |
|
| Q |
420 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaaca |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404584 |
accgataaccatctttcggctaacctagcctcctccgtccctcgggaccaaca |
14404532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 45610202 - 45610230
Alignment:
| Q |
465 |
gaccaacaagaggtagtacaggaatattc |
493 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45610202 |
gaccaacaagaggtagtacaggaatattc |
45610230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 55622 - 55434
Alignment:
| Q |
20 |
catcaggtcaccaacttccttaaccttccggcactgggcaggcgtcagcccccatacatggtcttacgactttgcggagacctgtgtttttggtaaacag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| |
|
|
| T |
55622 |
catcaggtcaccaacttccttaaccttcctgcactgggcaggcgtcaacccccatacatggtcttactactttgcagagacctgtatttttgataaacag |
55523 |
T |
|
| Q |
120 |
tcgcccgggcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacggggctattttgccgagttccttagaga |
208 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
55522 |
tcacttaagcctggtcactgcgaccccctttgtgaggaggcaccccttctcccgaagttacatggctagtttgccgagttccttagaga |
55434 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 7869276 - 7869347
Alignment:
| Q |
178 |
tacggggctattttgccgagttccttagagagagttgtctcgcgcccctaggtattctctacctacccacct |
249 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| |||||||| | | |||||||||||||||||||||||||| |
|
|
| T |
7869276 |
tacgggtctattttatcgagttccttagagagggttgtctcacactcctaggtattctctacctacccacct |
7869347 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 7869234 - 7869275
Alignment:
| Q |
98 |
gacctgtgtttttggtaaacagtcgcccgggcctggtcactgc |
140 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7869234 |
gacctgtgtttt-ggtaaacagtcgcccggacctggtcactgc |
7869275 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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