View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_231 (Length: 288)

Name: NF11737A_low_231
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_231
NF11737A_low_231
[»] chr2 (8 HSPs)
chr2 (23-287)||(18345622-18345885)
chr2 (23-287)||(88335-88611)
chr2 (20-287)||(12130770-12131049)
chr2 (23-180)||(34696039-34696194)
chr2 (23-180)||(34718451-34718606)
chr2 (34-206)||(44017464-44017636)
chr2 (18-94)||(9709910-9709986)
chr2 (26-138)||(26198630-26198742)
[»] chr5 (18 HSPs)
chr5 (23-287)||(4267887-4268151)
chr5 (18-286)||(27292223-27292491)
chr5 (23-284)||(22767392-22767665)
chr5 (23-284)||(15988884-15989157)
chr5 (23-205)||(20204825-20205007)
chr5 (23-287)||(41940871-41941148)
chr5 (18-287)||(8387862-8388143)
chr5 (16-180)||(12660211-12660375)
chr5 (16-287)||(30222927-30223210)
chr5 (23-195)||(25730688-25730860)
chr5 (18-185)||(26597587-26597754)
chr5 (23-171)||(11375648-11375796)
chr5 (16-287)||(27533034-27533318)
chr5 (52-144)||(42989361-42989453)
chr5 (18-142)||(34652384-34652507)
chr5 (204-285)||(12660122-12660203)
chr5 (161-288)||(34653865-34654003)
chr5 (16-154)||(37448046-37448184)
[»] chr1 (14 HSPs)
chr1 (23-287)||(44527041-44527305)
chr1 (16-285)||(25682429-25682710)
chr1 (16-287)||(51113091-51113374)
chr1 (16-156)||(48166156-48166296)
chr1 (18-202)||(48949854-48950038)
chr1 (23-241)||(52109288-52109506)
chr1 (23-287)||(36733469-36733748)
chr1 (23-205)||(4395029-4395210)
chr1 (23-205)||(5609209-5609391)
chr1 (41-284)||(24538288-24538544)
chr1 (23-197)||(16816935-16817108)
chr1 (16-63)||(44602764-44602811)
chr1 (246-287)||(4394935-4394976)
chr1 (204-233)||(48950052-48950081)
[»] chr3 (13 HSPs)
chr3 (23-287)||(53496820-53497084)
chr3 (18-205)||(55199381-55199568)
chr3 (16-155)||(647339-647478)
chr3 (16-185)||(2615383-2615552)
chr3 (18-186)||(46007190-46007359)
chr3 (16-141)||(42340405-42340530)
chr3 (23-155)||(27941129-27941261)
chr3 (23-194)||(48227294-48227465)
chr3 (209-282)||(42340609-42340682)
chr3 (107-141)||(36310759-36310793)
chr3 (204-286)||(36310824-36310906)
chr3 (34-83)||(11020326-11020375)
chr3 (226-287)||(27747790-27747851)
[»] chr8 (10 HSPs)
chr8 (20-287)||(23853720-23853987)
chr8 (18-287)||(478186-478467)
chr8 (23-185)||(13414913-13415075)
chr8 (18-282)||(7127004-7127280)
chr8 (23-287)||(8451258-8451534)
chr8 (23-287)||(40588865-40589126)
chr8 (23-134)||(185726-185835)
chr8 (18-60)||(9496797-9496839)
chr8 (99-144)||(9496748-9496793)
chr8 (40-134)||(37712020-37712114)
[»] chr6 (9 HSPs)
chr6 (18-286)||(28106916-28107196)
chr6 (18-205)||(15606124-15606311)
chr6 (23-287)||(14679935-14680214)
chr6 (23-287)||(29368191-29368447)
chr6 (18-143)||(15053305-15053430)
chr6 (18-95)||(30802121-30802198)
chr6 (40-95)||(11731818-11731873)
chr6 (16-82)||(19691007-19691073)
chr6 (204-288)||(15606329-15606413)
[»] chr7 (13 HSPs)
chr7 (23-287)||(16098259-16098542)
chr7 (23-287)||(16731709-16731985)
chr7 (23-287)||(17709843-17710119)
chr7 (23-284)||(9328737-9329009)
chr7 (37-287)||(22289017-22289279)
chr7 (23-205)||(1581485-1581668)
chr7 (16-205)||(30493738-30493926)
chr7 (23-203)||(17877280-17877460)
chr7 (23-177)||(30824610-30824763)
chr7 (37-287)||(29201104-29201360)
chr7 (47-138)||(34578437-34578528)
chr7 (205-283)||(11745970-11746048)
chr7 (222-287)||(1581391-1581456)
[»] chr4 (18 HSPs)
chr4 (16-287)||(29655794-29656076)
chr4 (23-287)||(28537922-28538196)
chr4 (23-284)||(32577183-32577454)
chr4 (23-287)||(21321303-21321579)
chr4 (23-284)||(2064632-2064905)
chr4 (18-205)||(37245982-37246169)
chr4 (23-287)||(49951089-49951365)
chr4 (23-204)||(18442280-18442461)
chr4 (18-287)||(56065405-56065686)
chr4 (16-287)||(51259657-51259941)
chr4 (18-205)||(51735101-51735288)
chr4 (23-204)||(55734880-55735061)
chr4 (34-205)||(43840453-43840624)
chr4 (23-203)||(41835446-41835626)
chr4 (23-284)||(49119535-49119795)
chr4 (23-284)||(28425974-28426235)
chr4 (16-58)||(24990051-24990093)
chr4 (224-282)||(37246204-37246262)
[»] scaffold0446 (1 HSPs)
scaffold0446 (18-205)||(56-243)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 18345622 - 18345885
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||  | |||||||||| ||||||||||||||||||||||||    
T  18345622 agtaaggctactgcctccccctc-aaaactgtcatatttgtccgttaccatttcgtttgagttcaaataaattacccacggaagtctctaacacaacacg 18345720  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18345721 caaaagaagtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcgttcggtttcttccaaacttgcactctattctgccc 18345820  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||    
T  18345821 gtgttgcacaaccggtggtgaatgatgtttatgaacctcttgccattactgccatgcatttagtg 18345885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 88611 - 88335
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | | ||  |||||||||||||||| |    
T  88611 agtaaggctactgcctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccgaataaattgcccgcgagagtctctaacacaacatg 88512  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||| ||||||||||||||| ||||||||||  || ||||||||||||||||||||||||||  ||||||||| |||||            |||||||    
T  88511 caaaagttgtaatatggttacggtcatggaacgcagcatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgtgttgttgccttgcac 88412  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| ||| ||||||| ||||||||| || |  ||||||||| ||| ||||||||||  || |||||||||||||    
T  88411 tctattatgctcgtgttgtacaaccggtagtgagggatgtttatgaacatcttgccattgttgtcatgcatctagtg 88335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 12130770 - 12131049
Alignment:
Q  20 tcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaac 119  Q
    |||||||||||||||| |||||||||||| ||| |||||||||  || || |||||| ||||||||||||||| || | | ||| |||||||||||||||    
T  12130770 tcaagtaaggctactgcctccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccgaataatttgcccgcgggagtctctaacacaac 12130869  T
Q  120 acgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttg 207  Q
    || ||||||||  |||||||||||| ||||||||||  || |||||||||||||||||||| |||||  ||| ||||| |||||            ||||    
T  12130870 acccaaaagatagaatatggttacggtcatggaacggggcatccacattgcacttcaaccacgtctcgctcgatttctcccaaattgagttgttaccttg 12130969  T
Q  208 cactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| ||   |||||||||||||||||||||| |  | ||||||| ||||||||||||||  |||||||||| |||||    
T  12130970 cactctgtttgtcccgtgttgcacaaccggtggtgatggttgtttatgaacctcttgccattgttgccatgcatatagtg 12131049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 34696039 - 34696194
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |  ||||||||||||||||| | ||||| |||||||||| |||||||    
T  34696039 agtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccat--cgattgagcccgaataaattgcccacgggagtctctaacgcaacacg 34696136  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaacca 180  Q
    |||||||||||||||| ||| | |||||||| || || ||||| ||| ||||||||||    
T  34696137 caaaagatgtaatatgcttatggtcatggaatgtggcatccacgttgtacttcaacca 34696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 34718451 - 34718606
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||  |  ||||||||||||||||| | ||||| |||||||||| |||||||    
T  34718451 agtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccat--cgattgagcccgaataaattgcccacgggagtctctaacgcaacacg 34718548  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaacca 180  Q
    |||||||||||||||| ||| | |||||||| || || ||||| ||| ||||||||||    
T  34718549 caaaagatgtaatatgcttatggtcatggaatgtggcatccacgttgtacttcaacca 34718606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 44017464 - 44017636
Alignment:
Q  34 tgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgta 133  Q
    |||||||||||||||||||||||||||||  || || ||||| ||||||||||||||||||| | ||||| ||||||||||||||||||| |||||||||    
T  44017464 tgtctccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgta 44017563  T
Q  134 atatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaactt 206  Q
    | ||||| | | |||  |||||  |  | | ||||||||||||||||||||||  |||| |||||| ||||||    
T  44017564 agatggtcatgatcacagaacgcggaattcgcattgcacttcaaccatgtctcgctcggcttcttcaaaactt 44017636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9709986 - 9709910
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaat 94  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  9709986 catcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaataaat 9709910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 26198742 - 26198630
Alignment:
Q  26 aaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaa 125  Q
    ||||||||||  |||||||||||||||||||||||||| || | |||||| |||||||| |||||||||| | |||   ||||||||||||| ||| |||    
T  26198742 aaggctactgcatccccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgcccacatgagtctctaacacagcacacaa 26198643  T
Q  126 aagatgtaatatg 138  Q
    |||||| ||||||    
T  26198642 aagatgcaatatg 26198630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 4268151 - 4267887
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||  |||||||| ||||||||| | ||||  ||||||||||||||||||    
T  4268151 agtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctgaataaattgcccacgagagtctctaacacaacacg 4268052  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    |||||||||||||||||||||  ||| | ||||  |||||||| |||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||    
T  4268051 caaaagatgtaatatggttacaatcaagaaacgcggcgtccacgttgcactttaaccatgactcgttcggtttctcccaaacttgcactctattctgccc 4267952  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||| |||| || ||| ||||| |||||||||||||| |||||||||||||||||    
T  4267951 gtgttgcacaaccgatggtgaacgatttttatgaacctcttgccattgctgccatgcatctagtg 4267887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 27292491 - 27292223
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||||| || |||||||| ||||||  | ||||||||||| ||||||||  |||||||||||||||||| | ||||  |||||||||||||    
T  27292491 catctagtaaggctattgcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccgaataaattgcccacgagagtctctaacaca 27292392  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattc 217  Q
    ||| |||||| |||||||||||||||  |||||||||||  | |||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||    
T  27292391 acatgcaaaatatgtaatatggttactatcatggaacgtgacatccacattgcacttcaaccatgactcgttcggtttctcccaaacttgcacgctattc 27292292  T
Q  218 tgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagt 286  Q
    | || ||||||||||||   |||| ||  |||||||| ||||||||||||||  || ||||||||||||    
T  27292291 tacctgtgttgcacaactaatggtgaacaatgtttatgaacctcttgccattgttgacatgcatctagt 27292223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 22767392 - 22767665
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| | | ||| | ||||||||||||||||    
T  22767392 agtaaggctactgcctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgcccccgggaatctctaacacaacacg 22767491  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||||||||| ||| ||||  ||||||||||  || ||||||||||||||||||||||||||  ||||||||| |||||            |||||||    
T  22767492 caaaagatgtaagatgattactgtcatggaacgcggcatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcac 22767591  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    |||||| || |||||| |||||||| || || |  ||||||||| |||||||||||||| ||||||||||||||    
T  22767592 tctattttggccgtgtggcacaaccagtagtgatggatgtttatgaacctcttgccattgctgccatgcatcta 22767665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 15988884 - 15989157
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| || |||||||| ||| ||||||    
T  15988884 agtaaggttactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctgacataacacg 15988983  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||| |||||||||||| || ||||||||||   | |||| ||| ||||||||| | |||||  ||||||||| |||||            |||||||    
T  15988984 caaaagttgtaatatggttgcggtcatggaacgcgacatccatatttcacttcaacaacgtctcgctcggtttctcccaaactgagttgttaccttgcac 15989083  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    |||||| ||| ||||||||||||||| | || || | ||||||| ||||||||||||||  |||||||||||||    
T  15989084 tctattatgctcgtgttgcacaaccgctagtgaaggttgtttatgaacctcttgccattgttgccatgcatcta 15989157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 20205007 - 20204825
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||| | ||||||| | | ||| |||||||| ||||| | |    
T  20205007 agtaaggctactgcctccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctggataaatttcccgcgggagtctctagcacaaaatg 20204908  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
     ||||||||||||||||||| | ||||||||||  || ||||||||||||||||||||||||||||| ||||||| |||||||    
T  20204907 taaaagatgtaatatggttatggtcatggaacgcggcatccacattgcacttcaaccatgtctcatttggtttctcccaaact 20204825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 41940871 - 41941148
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgt-tgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacac 121  Q
    |||||||||| |||||||||||||||||||||||||||| ||  | || |||||| ||||||| |||||||||| | ||||| ||||| |||||| ||||    
T  41940871 agtaaggctattgtctccccctccaaaactgtcatatttttctatatgtcatttcgtttgagctcgaataaatttcccacgggagtctttaacactacac 41940970  T
Q  122 gcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgca 209  Q
     |||||||||||| || |||||| ||||||||||  || ||||||||||||||||||||  ||||  ||||||||| |||||            ||||||    
T  41940971 acaaaagatgtaagatagttacggtcatggaacgcggcatccacattgcacttcaaccacatctcgctcggtttctcccaaattgggttgataccttgca 41941070  T
Q  210 ctctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||||||||||||||||||||  |  | ||||||| ||||||||||||||| || |||| ||||||||    
T  41941071 ctctattctgcccgtgttgcacaaccggtggcgagggttgtttatgaacctcttgccattattgtcatgtatctagtg 41941148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 8388143 - 8387862
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||| | ||||  |||||||||||||    
T  8388143 catcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctgaatgaattgcccacgagagtctctaacaca 8388044  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttcca------------aact 205  Q
    |||||| |||||||||||||  | ||| ||||| ||||  || ||||||||| |||||||||| ||||||  |||||||| |||            | ||    
T  8388043 acacgcgaaagatgtaatattttaacggtcatgaaacgcggcatccacattgtacttcaaccacgtctcacgcggtttctcccagactgagttgttagct 8387944  T
Q  206 tgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||||||||||||||||| || || | |  | ||||||| |||||| || |||| |||||||||||||||||    
T  8387943 tgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaacctcctgtcattgctgccatgcatctagtg 8387862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 12660375 - 12660211
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| |||||| |||||| ||||| ||| || ||||||||||||| ||| ||||||||| ||||||||||||||||||   || | ||||||||||||    
T  12660375 gacatcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccgaataaattgtccatgaaagtctctaaca 12660276  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaacca 180  Q
    ||||||||||||||||||| ||||||||| ||||||||||  || ||||||||||||||||||||    
T  12660275 caacacgcaaaagatgtaagatggttacgttcatggaacgcggcatccacattgcacttcaacca 12660211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 30222927 - 30223210
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||| |   | ||| | ||| |||||||||||||||||| | || ||||||||||||||    
T  30222927 gacatcaagtaaagctactgtctccctctccaaaactgtcaaattcgcttgctgcaaattcgtttgagcccgaataaattgcccatggaagtctctaaca 30223026  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ 203  Q
    ||||||||||||||||||||||||||||  ||||||||||   ||||||  ||||||||  |||| |||||   |||||||| |||||                
T  30223027 caacacgcaaaagatgtaatatggttacagtcatggaacgcgacgtccatgttgcactttgaccacgtctcgcacggtttctcccaaacagagttgttac 30223126  T
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||||||||||||||||||||||||||| | |||| |  | ||||||| ||||||||| ||||  || |||||||||||||    
T  30223127 cttgcactctattctgcccgtgttgcacaactgttggtgagggctgtttatgaacctcttgtcattgttgtcatgcatctagtg 30223210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 25730860 - 25730688
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||| | | ||  || |||||||||||||||    
T  25730860 agtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcgaataaatttcccgcgtgagactctaacacaacacg 25730761  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggttt 195  Q
      |||  ||||||||||||||| ||||||||||  |  |||||||||||||||||||| |||||  |||||||    
T  25730760 tgaaaattgtaatatggttacggtcatggaacgcggaatccacattgcacttcaaccacgtctcgctcggttt 25730688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 26597587 - 26597754
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| |||||||||||||| |||||||||||  |||||||||||| ||||||||||||| ||||   ||||| |||||||||||||    
T  26597587 catcgagtaaggcaactgcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgtccacgggagtctctaacaca 26597686  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtct 185  Q
    |||||| |||||||||||||| | | | ||||| ||||  || |||||||||||||||||||| ||||    
T  26597687 acacgcgaaagatgtaatatgttgatgatcatgaaacgcggcatccacattgcacttcaaccacgtct 26597754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 23 - 171
Target Start/End: Original strand, 11375648 - 11375796
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||||||||||||||||||||||||||||||||   || ||||||||| |||||| |||||||||| ||   ||  |||||||||||||||| |    
T  11375648 agtaaggctactgtctccccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctctaacacaacatg 11375747  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgca 171  Q
    |||||| ||||||||||||||| ||||||||||  || |||||||||||    
T  11375748 caaaagttgtaatatggttacgttcatggaacgcagcatccacattgca 11375796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 27533034 - 27533318
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| | ||| |||| || |||||||||||||||||| ||||||  | | | ||||||| |||||||||||||||||| | ||||| |||||||||||    
T  27533034 gacatcgaataaagctattgcctccccctccaaaactgttatattttcctgctaccatttcgtttgagcccgaataaattgcccacgggagtctctaaca 27533133  T
Q  116 caacacgc-aaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa----------- 203  Q
    |||||||| |||||||||||  |||||||| ||||||||||   | |||||||| |||||||  |  |||||   || ||||| |||||               
T  27533134 caacacgcaaaaagatgtaaactggttacgatcatggaacgcgacatccacattacacttcagtcgcgtctcgcgcgatttctcccaaactaaactatta 27533233  T
Q  204 -cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
     |||||||| ||||||| | ||||||||||||||||||| |  ||||||||| ||||||||| ||||  ||||||||||||||||    
T  27533234 ccttgcactatattctgtctgtgttgcacaaccggtggtgagggatgtttatgaacctcttgtcattgttgccatgcatctagtg 27533318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 42989361 - 42989453
Alignment:
Q  52 tgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgtaatatggttacg 144  Q
    ||||||||||||| | ||| |||||  ||||||| |||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||    
T  42989361 tgtcatatttgtctgctgctatttcgcttgagccggaataaattagtcacggaagtctctaaaccaacacgcaaaagatgaaatatggttacg 42989453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 34652384 - 34652507
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||| || | ||||||| | ||| |||||||||||||  || |||| |||  |||||| ||| ||||||| | ||||| |||||||||||||    
T  34652384 catcgagtaaggttattatctccccttacaacactgtcatatttgctcgctgccttttg-tttgagaccggataaattgcccacgggagtctctaacaca 34652482  T
Q  118 acacgcaaaagatgtaatatggtta 142  Q
    |||| |||||||||||| |||||||    
T  34652483 acacacaaaagatgtaagatggtta 34652507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 12660203 - 12660122
Alignment:
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatga-tgtttataaacctcttgccattactgccatgcatctag 285  Q
    ||||||||||||| || || |||||||||||||||||| ||||  ||||||| || |||||||||||||||||||| ||||||    
T  12660203 cttgcactctattatgtccatgttgcacaaccggtggt-aatgcctgtttatgaatctcttgccattactgccatgtatctag 12660122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 161 - 288
Target Start/End: Original strand, 34653865 - 34654003
Alignment:
Q  161 tccacattgcacttcaaccatgtctcattcggtttcttccaaactt-----------gcactctattctgcccgtgttgcacaaccggtggttaatgatg 249  Q
    |||||||||||||||||||| ||||| | |||||||| ||||||||           |||||||||||||| ||||||||||||| |||| | |  | ||    
T  34653865 tccacattgcacttcaaccacgtctcgtgcggtttctcccaaacttagttgttgcctgcactctattctgcacgtgttgcacaactggtgttgagggttg 34653964  T
Q  250 tttataaacctcttgccattactgccatgcatctagtga 288  Q
    ||||| || || ||||||||  |||||||||||||||||    
T  34653965 tttatgaatcttttgccattgttgccatgcatctagtga 34654003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 37448184 - 37448046
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| ||||||||||| | |||||| | ||| |||||||| ||||  || ||||||||  |||||| ||||||| |||   ||||  |||||||||||    
T  37448184 gacatcgagtaaggctaccgcctcccctttcaacactgtcatgtttgcacgctgccattttgtttgagtccgaatacattgtccacgagagtctctaaca 37448085  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaac 154  Q
    |||||   ||| ||||||| ||||||| | |||||||||    
T  37448084 caacatataaacgatgtaagatggttatggtcatggaac 37448046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 44527305 - 44527041
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||| | |||   ||||||||||||||||||    
T  44527305 agtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacg 44527206  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    |||||||||||||||||||||  ||||||||||  ||||||||||||||||| ||||||| |||  ||||||||| |||||||||||||||||| |||||    
T  44527205 caaaagatgtaatatggttacagtcatggaacgcggcgtccacattgcactttaaccatgactcggtcggtttctcccaaacttgcactctattatgccc 44527106  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||| |||| ||  || ||||| ||||||||||||||  ||||||||||||||||    
T  44527105 gtgttgcacaaccgatggtaaactatttttatgaacctcttgccattgttgccatgcatctagtg 44527041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 285
Target Start/End: Complemental strand, 25682710 - 25682429
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||  ||||||| | ||||| |||||||||||    
T  25682710 gacatcgagtaaggctactgcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagcccagataaattgcccacgggagtctctaaca 25682611  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ 203  Q
    ||||||||||||||||||| ||||||||| ||||| |||   || |||||||||||||||||||||||||||  |||||||| |||||                
T  25682610 caacacgcaaaagatgtaagatggttacgttcatgaaacacggcatccacattgcacttcaaccatgtctcacacggtttctcccaaattgagttcttgc 25682511  T
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctag 285  Q
    ||||||||||||||| ||| |||||||||| ||| | | |  | ||||||| || ||||||||||| |||||||||||||||    
T  25682510 cttgcactctattctacccatgttgcacaatcggcgataagggttgtttatgaatctcttgccattgctgccatgcatctag 25682429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 287
Target Start/End: Complemental strand, 51113374 - 51113091
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| |||||||| |||| ||||||||||||||| || |||||||  |||||||||||| |||||| |||||| |||| | ||||| |||||||||||    
T  51113374 gacatcgagtaaggcaactgcctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccgaatgaattgcccacgggagtctctaaca 51113275  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ 203  Q
    |||||||| |||||||||||||| | ||| ||||| |||   || |||||||||||||| ||||| ||||||  || ||||| |||||                
T  51113274 caacacgcgaaagatgtaatatgttgacggtcatgaaacacggcatccacattgcactttaaccacgtctcacacgatttctcccaaactgagttgttag 51113175  T
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||||||||||||||||||| || || | |  | ||||||| |||||| ||||||| |||||||||||||||||    
T  51113174 cttgcactctattctgcccgtgttgcacaatcgatgatgagggctgtttatgaacctcctgccattgctgccatgcatctagtg 51113091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 48166296 - 48166156
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||||||   ||||| |||||||||||    
T  48166296 gacatcgagtaaggctattgtctcccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgggagtctctaaca 48166197  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgt 156  Q
    |||||| |||||||||||| ||||||||| |||||||||||    
T  48166196 caacacacaaaagatgtaagatggttacggtcatggaacgt 48166156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 48949854 - 48950038
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| |||||||||||||||| |||||||||  |||||||||||| ||||||||||||| |||| |  |||| |||||||||||||    
T  48949854 catcgagtaaggcaactgcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccgaatgaattgccaacgggagtctctaacaca 48949953  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaa 202  Q
    |||||| |||||||||||||| | ||| ||||| ||||  || |||||||||||||||||||| ||||||  |||||||| ||||    
T  48949954 acacgcgaaagatgtaatatgttgacggtcatgaaacgcggcatccacattgcacttcaaccacgtctcacgcggtttctcccaa 48950038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 52109506 - 52109288
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||||||  |||||||||||||   ||||||||| ||| ||||||||| |||||||| |||||||||   ||| | |||||||||||||||| |    
T  52109506 agtaaggctactgcatccccctccaaaatgatcatatttgcccgctgccatttcgtttgagcctgaataaattgtccacaggagtctctaacacaacatg 52109407  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    |||||||| ||| ||| ||||| |||||||||    |||||||||| ||||||||||| ||||   ||||||||| |||||||  ||||||||| |||||    
T  52109406 caaaagatataagatgattacggtcatggaacacaacgtccacattacacttcaaccacgtctttgtcggtttctcccaaactcacactctattatgccc 52109307  T
Q  223 gtgttgcacaaccggtggt 241  Q
    ||| |||||||||||||||    
T  52109306 gtgctgcacaaccggtggt 52109288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 36733748 - 36733469
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||| |||||| ||||||||||||||||| |||||||  |||||| |||||  ||||||||||||||||||   ||||  |||||||||||||||||     
T  36733748 agtaagactactgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccgaataaattgtccacgagagtctctaacacaacaca 36733649  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccac--attgcacttcaaccatgtctcattcggtttcttccaaa------------cttgc 208  Q
    |||||| ||||| |||||||   ||||| ||||  || |||||  |||||||||||||||||||||  ||||||||| | |||            |||||    
T  36733648 caaaaggtgtaagatggttatagtcatgaaacgcggcatccacatattgcacttcaaccatgtctcgctcggtttctccgaaactcagttattaccttgc 36733549  T
Q  209 actctattctgcccgtgttgcacaaccggtggtta-atgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    | |||||| || || ||||||||||||||| || |   ||||||||| |||||||||||||| |||||||||||||||||    
T  36733548 attctattttggccttgttgcacaaccggtagtgaggggatgtttatgaacctcttgccattgctgccatgcatctagtg 36733469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 4395210 - 4395029
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||| || |||||| || |||||| ||||||||| ||| |||||||||  ||||||||| ||||||| | ||||  ||||||||||||| || |    
T  4395210 agtaaggctagtgcctccccttc-aaaactctcatatttgcccgctgccatttcgattgagcccggataaattgcccacgagagtctctaacacagcatg 4395112  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    |||||| ||| ||||||||||| ||||||||||  || |||||||||||||||| ||| |||||  ||||||||| |||||||    
T  4395111 caaaagttgtgatatggttacggtcatggaacgcggcttccacattgcacttcagccacgtctcgctcggtttctcccaaact 4395029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 5609391 - 5609209
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||| || |||    |||||||||||||||||| |||  |  |||||||| |||| ||||    
T  5609391 agtaaggctactgcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccgaataaattgctcgtgtgagtctctagcacagcacg 5609292  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    | |||| ||||||||||||||  ||||||||||   | |||||||||||||||||||| |||||  ||||||||| |||||||    
T  5609291 cgaaagttgtaatatggttacagtcatggaacgcgacatccacattgcacttcaaccacgtctcgctcggtttctcccaaact 5609209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 24538544 - 24538288
Alignment:
Q  41 ccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgtaatatggt 140  Q
    ||||||||||||||| |||||| | | ||||| ||| |||||||||||||||||||  ||||| ||||||||||||||||| |||||||| |||  ||||    
T  24538544 ccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattatccacgggagtctctaacacaacacacaaaagatctaacttggt 24538445  T
Q  141 tacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcactctattctgcccgtgttg 228  Q
    |||| | || |||||  || ||||||||||| ||| |||| |||||| | |||||||  ||||            ||||||||||||||||||  |||||    
T  24538444 tacggttatagaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatgttaccttgcactctattctgcctatgttg 24538345  T
Q  229 cacaaccggtggttaatgatgtttat-aaacctcttgccattactgccatgcatcta 284  Q
    |||||| |||||| |  ||||||||| |||||||||||||||  || ||||||||||    
T  24538344 cacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 24538288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 16816935 - 16817108
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||| ||||||| ||||||||||| ||  ||||||||   |||||| |||||||||| | | ||  ||||||||| |||| ||     
T  16816935 agtaaggctactgcctcccc-tccaaaattgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctctaaaacaataca 16817033  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttct 197  Q
    |||||||||||||||||||||   |||||||||  |||||| ||||||||||||||||  ||||| |||||||||    
T  16817034 caaaagatgtaatatggttacagacatggaacgcggcgtccgcattgcacttcaaccacatctcactcggtttct 16817108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 44602811 - 44602764
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgt 63  Q
    |||||| |||||| ||| ||||||||||||||||| ||||||||||||    
T  44602811 gacatcgagtaagactaatgtctccccctccaaaattgtcatatttgt 44602764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 4394976 - 4394935
Alignment:
Q  246 gatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||||||||||||||||||||  || |||||||||||||    
T  4394976 gatgtttataaacctcttgccattgttgtcatgcatctagtg 4394935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 48950052 - 48950081
Alignment:
Q  204 cttgcactctattctgcccgtgttgcacaa 233  Q
    ||||||||||||||||||||||||||||||    
T  48950052 cttgcactctattctgcccgtgttgcacaa 48950081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 53497084 - 53496820
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||| |||||||||| ||||||||| || |||||  |||||||||||||||||| | |||   ||||||||||||||||||    
T  53497084 agtaaggctactgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccgaataaattgcccacaagagtctctaacacaacacg 53496985  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||| |||  ||||||||| ||||||||||||||| ||||||||    
T  53496984 caaaagatgtaatatggttacggtcatggaacgcggcgtccacattgcactttaaccatgactcggtcggtttctcccaaacttgcactctgttctgccc 53496885  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||| |||| || ||| ||||| ||||||||| |||| |||||||||||||||||    
T  53496884 gtgttgcacaaccgatggtgaacgatttttatgaacctcttgtcattgctgccatgcatctagtg 53496820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 55199568 - 55199381
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| ||||||||||||||||||||||||| || | || |||||| ||||||||||||| |||| | ||||| |||||||||||||    
T  55199568 catcgagtaaggcaactgcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaacaca 55199469  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    |||||| |||||||||||||  | ||| ||||| ||||| || |||||||||||| |||||||  |||||  |||||||| |||||||    
T  55199468 acacgcgaaagatgtaatatattgacggtcatgaaacgtggcatccacattgcacgtcaaccacatctcacgcggtttctcccaaact 55199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 647339 - 647478
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| ||||||||| ||| ||||||||||| |||||||||||| | ||| ||||||||| |||||||||| | ||||| |  |  |||||||||||||    
T  647339 gacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttgagcccggaaaaattgcctagagaagtctctaaca 647438  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacg 155  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  647439 caacacgcaaaagatgtaatatggttacgctcatggaacg 647478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 2615552 - 2615383
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| ||||||||||||| |||||||||||||||| ||||||||| ||| ||||| ||| ||||||||||||| |||| | |||  ||| ||||||||    
T  2615552 gacatcgagtaaggctactgcctccccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgcccacaaaagcctctaaca 2615453  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtct 185  Q
    |||| | ||||| |||||||||||||| | ||||| ||||  |  ||||||||||| |||||||| ||||    
T  2615452 caacgcacaaaaaatgtaatatggttatgatcatgaaacgcggtatccacattgcatttcaaccacgtct 2615383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 46007359 - 46007190
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctct-aacac 116  Q
    |||||||||||||||||||||||||||  |||| |||| |||||| ||| ||||||||| ||||||||||||||||||   ||||  ||||||| ||||     
T  46007359 catcaagtaaggctactgtctccccctaaaaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaattttccacgagagtctctaaacaa 46007260  T
Q  117 aacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctc 186  Q
    |||||||||||||| ||| ||||||||  | |||||||   || |||||||||||||||||||| |||||    
T  46007259 aacacgcaaaagatataagatggttacaataatggaacacggcatccacattgcacttcaaccacgtctc 46007190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 42340405 - 42340530
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| |||| ||||| || |||||||||||| |||||||||| || ||| ||||||||  ||||||||||||||||||   ||||  |||||||||||    
T  42340405 gacatcgagtagggctattgcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccgaataaattgtccacgagagtctctaaca 42340504  T
Q  116 caacacgcaaaagatgtaatatggtt 141  Q
    ||||||||||||||||||| ||||||    
T  42340505 caacacgcaaaagatgtaagatggtt 42340530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 27941129 - 27941261
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| ||||||||  |||||| |||||||||||   | ||  | ||||||| ||||||||    
T  27941129 agtaaggctactgcctccccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacg 27941228  T
Q  123 caaaagatgtaatatggttacgctcatggaacg 155  Q
    ||||| || ||||||||||||| ||||| ||||    
T  27941229 caaaaaatataatatggttacgatcatgaaacg 27941261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 48227465 - 48227294
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||||||  |||| |||||| || ||||| |||  ||  |||  |||| ||| |||||||||||||| | | ||  ||||||||||||||||||    
T  48227465 agtaaggctactgcatcccactccaatacagtcatgttttcccactgctgtttcgtttaagcccgaataaattgcccgcgagagtctctaacacaacacg 48227366  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtt 194  Q
    |||||||||||| ||||||||| | ||| || |  || ||||||||| |||||||||| || ||||||||||    
T  48227365 caaaagatgtaacatggttacggtaatgaaatgcggcatccacattgtacttcaaccacgtttcattcggtt 48227294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 282
Target Start/End: Original strand, 42340609 - 42340682
Alignment:
Q  209 actctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatc 282  Q
    |||||||||||| |||||||||||||||||||| |  | ||||||| || |||||||||||  || ||||||||    
T  42340609 actctattctgcacgtgttgcacaaccggtggtgagggctgtttatgaatctcttgccattgttgtcatgcatc 42340682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 141
Target Start/End: Original strand, 36310759 - 36310793
Alignment:
Q  107 tctctaacacaacacgcaaaagatgtaatatggtt 141  Q
    |||||||||||||||||||||||||||| ||||||    
T  36310759 tctctaacacaacacgcaaaagatgtaaaatggtt 36310793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 286
Target Start/End: Original strand, 36310824 - 36310906
Alignment:
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagt 286  Q
    ||||||||||||| || ||||||||||||| | || || |  | ||||||| |||||||||||||| |||| ||| |||||||    
T  36310824 cttgcactctattatggccgtgttgcacaatcagttgtgagggttgtttatgaacctcttgccattgctgcaatgtatctagt 36310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 11020326 - 11020375
Alignment:
Q  34 tgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgag 83  Q
    ||||||||||||||||| ||||||||||||||  |  |||||||||||||    
T  11020326 tgtctccccctccaaaagtgtcatatttgtccactttcatttcatttgag 11020375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 287
Target Start/End: Original strand, 27747790 - 27747851
Alignment:
Q  226 ttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||||| | || | ||||| ||||||||| ||||  ||||||||||||||||    
T  27747790 ttgcacaaccggtggtgagtgctttttatgaacctcttgtcattgttgccatgcatctagtg 27747851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 287
Target Start/End: Complemental strand, 23853987 - 23853720
Alignment:
Q  20 tcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaac 119  Q
    |||||||||||||||| ||| ||||||||||||||||||||| |||| || |||||| ||||| |||||||||||| | ||||| ||||||||||| |||    
T  23853987 tcaagtaaggctactgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccgaataaattgcccacgggagtctctaacataac 23853888  T
Q  120 acgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctg 219  Q
    |||||||||||||||||| |||||| ||||||||||  |||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||| ||    
T  23853887 acgcaaaagatgtaatatagttacggtcatggaacgcggcgtccacatcgcacttcaaccacgtctcgttcggtttctcccaaacttgcactctattatg 23853788  T
Q  220 cccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    || ||||||||||||| ||||| ||| |||||||| ||||||||||||||  || ||||||| |||||    
T  23853787 cctgtgttgcacaacctgtggtgaataatgtttatgaacctcttgccattgttgtcatgcatttagtg 23853720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 478186 - 478467
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||   || |||| |||||||||||    
T  478186 catcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattgaccatggaaatctctaacaca 478285  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ct 205  Q
    |||| |||||||||| | ||||||  | |||||||||||||| |||||||| |||||||||||  ||||  | ||||||| |||||            ||    
T  478286 acacacaaaagatgttagatggttgtggtcatggaacgttgcatccacattacacttcaaccacatctcgcttggtttctcccaaattgagatgttacct 478385  T
Q  206 tgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    || |||||||| |||| |||||||||||||  |||| |  ||||||||| |||||||||||||| |||||||||||||||||    
T  478386 tggactctattttgcctgtgttgcacaaccactggtgatggatgtttatgaacctcttgccattgctgccatgcatctagtg 478467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 13415075 - 13414913
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| | | || |||||||||| | |||||     
T  13415075 agtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacaca 13414976  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtct 185  Q
    |||||| ||||||||||||||| |||||||||    | |||||||||||||||||||| ||||    
T  13414975 caaaagttgtaatatggttacgttcatggaacacgacatccacattgcacttcaaccacgtct 13414913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 7127280 - 7127004
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||  |||||||||||||||| ||||||||| ||||| |||||||||||| || |||||||||| | | ||  |||||||||||||    
T  7127280 catcgagtaaggctactacctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacgaataaatttcccccgagagtctctaacaca 7127181  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ct 205  Q
    ||| ||| | ||||||| | ||||||| ||||||||||  || |||||||| |||||||||||||||||  |||| |||| |||||            ||    
T  7127180 acatgcagaggatgtaagacggttacgttcatggaacgcggcatccacattccacttcaaccatgtctcgctcggcttctcccaaactaagttgttacct 7127081  T
Q  206 tgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatc 282  Q
    ||| | |||||||| | |||||||||||||||| || |  ||||||||| |||||| ||||||| ||||||||||||    
T  7127080 tgccccctattctggctgtgttgcacaaccggtagtgagggatgtttatgaacctcatgccattgctgccatgcatc 7127004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 8451258 - 8451534
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||| ||||||| |||||||||||| ||||||||||||| ||| | || |||  ||||||||||||||||||   |||   ||||||||||||||||      
T  8451258 agtaaagctactgcctccccctccaacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctctaacacaacatc 8451357  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||||||||| ||||||||| ||||||||||  || |||||||| ||||||||||| |||||   |||||||| |||||            |||||||    
T  8451358 caaaagatgtaaaatggttacggtcatggaacgcggcatccacattacacttcaaccacgtctcgcacggtttctcccaaattgaactatgaccttgcac 8451457  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| |||  ||||||||||||| ||||| |  | ||||||| ||||||||||||||  |||||||| |||||||    
T  8451458 tctattttgctggtgttgcacaacctgtggtgatggctgtttatgaacctcttgccattgttgccatgcctctagtg 8451534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 40588865 - 40589126
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||| |||||||| |||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||          | ||      | ||| |    
T  40588865 agtacggctactgcctccccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaatt----------gcct-----gctacaag 40588949  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||| ||| ||||||||||| ||||||||||  || ||||| |||||||||||||| |||||| ||||||||| |||||            |||||||    
T  40588950 caaaagttgttatatggttacgttcatggaacgcggcatccacgttgcacttcaaccacgtctcactcggtttctcccaaactgagttgttaccttgcac 40589049  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||| || |||||||||||||||||||||||| |  | ||||||| ||||||||||||||  ||||||||||||||||    
T  40589050 tctgttatgcccgtgttgcacaaccggtggtgagggctgtttatgaacctcttgccattgttgccatgcatctagtg 40589126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 185726 - 185835
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||  |||||| ||||||||||||||||||| ||||| ||||||| |||||||||  ||||||| | | ||| ||||||| |||||||  |    
T  185726 agtaaggctacttcctcccc-tccaaaactgtcatatttgcccgtttccatttcgtttgagcccagataaatttccctcgg-agtctcttacacaacgtg 185823  T
Q  123 caaaagatgtaa 134  Q
    || |||||||||    
T  185824 cagaagatgtaa 185835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 9496839 - 9496797
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatt 60  Q
    |||||||||||||||||| ||| ||||||||||||||||||||    
T  9496839 catcaagtaaggctactgcctcaccctccaaaactgtcatatt 9496797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 9496793 - 9496748
Alignment:
Q  99 cacggaagtctctaacacaacacgcaaaagatgtaatatggttacg 144  Q
    ||||||||||||||| |||||||||||||||||||| || ||||||    
T  9496793 cacggaagtctctaatacaacacgcaaaagatgtaagatagttacg 9496748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 37712114 - 37712020
Alignment:
Q  40 cccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgtaa 134  Q
    ||||| ||||||||||||||||  ||| || |||||| ||| ||| | |||||||| | |||   ||| ||||||||||||||||||| ||||||    
T  37712114 ccccttcaaaactgtcatattttcccgctgtcatttcgttttagctcaaataaattgcccacacgagtttctaacacaacacgcaaaaaatgtaa 37712020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 28107196 - 28106916
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||||||   ||||| |||||||||||||    
T  28107196 catcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctgaataaattgtccacgggagtctctaacaca 28107097  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ct 205  Q
    |||| | |||||||||| ||||||||| ||||||||||| || ||| | |||||||||||||| ||||| || ||||||| |||||            ||    
T  28107096 acacacgaaagatgtaagatggttacgatcatggaacgtggcttcctcgttgcacttcaaccacgtctcgtttggtttctcccaaactgagatgttacct 28106997  T
Q  206 tgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagt 286  Q
    ||||||||||| |||  |||||||||||||  |||| || ||||||||| ||||||||||||||  |||||||||||||||    
T  28106996 tgcactctattttgcatgtgttgcacaaccaatggtgaaagatgtttatgaacctcttgccattgttgccatgcatctagt 28106916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 15606124 - 15606311
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||  ||| ||||||||  ||||||||||||||| || | || || |||||||||||||    
T  15606124 catcgagtaaggctactgcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccgaataagttgcccatgggagtctctaacaca 15606223  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    ||||| ||||||||||||||||||||| || || || |  || |||||||||||||||||||||||||| | |||||||| |||||||    
T  15606224 acacgaaaaagatgtaatatggttacgatcgtgaaatgcggcatccacattgcacttcaaccatgtctcgtgcggtttctcccaaact 15606311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 14680214 - 14679935
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcac---ggaagtctctaacacaac 119  Q
    ||||||||||||| |||||||||||| ||||||||||||  ||| ||||||||||||||||||  |||||||| | | |   || |||||||||||||||    
T  14680214 agtaaggctactgcctccccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgccgcgggagtctctaacacaac 14680115  T
Q  120 acgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttg 207  Q
    | |||||||||||||| ||||| || ||||||||||  |  ||||||||||||||||||||||||||  ||||||||| |||||            ||||    
T  14680114 atgcaaaagatgtaatgtggttgcggtcatggaacgcggtatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttg 14680015  T
Q  208 cactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||||| ||| |||||||||||||  ||||| |  | ||||||| |||||||| |||||   |||||||||||||||    
T  14680014 cactctattatgctcgtgttgcacaactagtggtgagagttgtttatgaacctctttccattgtggccatgcatctagtg 14679935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 29368191 - 29368447
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||| || || ||||||||||||||||||||||||| |||| ||||||||| |||||||  |||||||||   ||||  |||||| |||||||||||    
T  29368191 agtaaggatattgcctccccctccaaaactgtcatatttatccgctgccatttcttttgagc--gaataaattgtccacgagagtctcaaacacaacacg 29368288  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaacttgcactctattctgccc 222  Q
    |||||||| ||      ||||| ||||| |  |  ||||||||||| |||||||||||  | || |||| ||||| ||||| |||||||||||| ||| |    
T  29368289 caaaagattta------ttacggtcatgaactgcagcgtccacatttcacttcaaccacatttcgttcgatttctcccaaatttgcactctattgtgctc 29368382  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||| |||||||| |  | |||||||||||| |||||||||||||| ||| |||||||||||||    
T  29368383 gtgttacacaaccgataatgaatgatgtttatgaacctcttgccattgctgtcatgcatctagtg 29368447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 15053305 - 15053430
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||| |||||||||||| ||| ||||||||  ||| || ||| |  ||||||||||||||||||   ||| |||||||||||||||    
T  15053305 catcgagtaaggctactgcctccccctccaacactatcatatttacccgctgtcatcttgtttgagcccgaataaattgtccactgaagtctctaacaca 15053404  T
Q  118 acacgcaaaagatgtaatatggttac 143  Q
    ||||||||||||||||| ||||||||    
T  15053405 acacgcaaaagatgtaagatggttac 15053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 30802121 - 30802198
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaatt 95  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||  ||| ||||||||||||||    
T  30802121 catctagtaaggctactgcctcccccaccaaaactgtcatatttgcccgctgccattttgtttaagcccgaataaatt 30802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 11731818 - 11731873
Alignment:
Q  40 cccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaatt 95  Q
    ||||||||||||||||||||||| ||| ||||||||  |||||||||| |||||||    
T  11731818 cccctccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 19691007 - 19691073
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttga 82  Q
    |||||| | |||||||| || |||||| |||||||| ||||||||||||||||| |||||| |||||    
T  19691007 gacatcgaataaggctattgcctccccttccaaaacggtcatatttgtccgttgtcatttcgtttga 19691073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 15606329 - 15606413
Alignment:
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtga 288  Q
    ||||||||||||  | ||||||||||| | |||||||| | || ||||||| |||||| |||||||  ||||||| |||||||||    
T  15606329 cttgcactctatgtttcccgtgttgcatagccggtggtgagtgttgtttatgaacctcctgccattgttgccatgaatctagtga 15606413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 16098542 - 16098259
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||  ||| |||||||||| |||||||||||| |||| ||||||| |||||||||||||||||| |  | || ||||||||||||||||||    
T  16098542 agtaaggctactacctctccctccaaaattgtcatatttgttcgtttccatttcgtttgagcccgaataaattgcctatgggagtctctaacacaacacg 16098443  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttca-------------------accatgtctcattcggtttcttccaaa 203  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||||||||||                   |||| || || || |||||||| |||     
T  16098442 caaaagaagtaatatggttacggtcatggaacgatgcgtccacattgcacttcaaccacgtatcgtttggttaaccacgtatcgtttggtttcttgcaag 16098343  T
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||||||  ||||||||||||||||    
T  16098342 cttgcactctattatgcccgtgttgcacaaccggtggtgaatgatgtttaggaacctcttgccattgatgccatgcatctagtg 16098259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 16731985 - 16731709
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||  ||||||||| |||||||||||||||||| | | ||| | |||||||||||||| |    
T  16731985 agtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatg 16731886  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    ||||||||||||||||||| || |||||||||   || ||||||||||||||||||||||||||  ||||||||| |||||            |||||||    
T  16731885 caaaagatgtaatatggttgcggtcatggaacacggcatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcac 16731786  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| |||  |||||||||||| |||||| | || ||||||| ||||||||||||||  |||||||| |||||||    
T  16731785 tctattatgcatgtgttgcacaactggtggtgagtgttgtttatgaacctcttgccattgttgccatgcttctagtg 16731709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 17710119 - 17709843
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||  ||||||||| |||||||||||||||||| | | ||| | |||||||||||||| |    
T  17710119 agtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccgaataaattgcccgcgggaatctctaacacaacatg 17710020  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    ||||||||||||||||||| || |||||||||   || ||||||||||||||||||||||||||  ||||||||| |||||            |||||||    
T  17710019 caaaagatgtaatatggttgcggtcatggaacacggcatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcac 17709920  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| |||  |||||||||||| |||||| | || ||||||| ||||||||||||||  |||||||| |||||||    
T  17709919 tctattatgcatgtgttgcacaactggtggtgagtgttgtttatgaacctcttgccattgttgccatgcttctagtg 17709843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 9328737 - 9329009
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||||||||| |||||||||  ||||||||||||| ||||||| ||||||||||  || ||| | ||||||||||||||||    
T  9328737 agtaaggctactgcctccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattg-tcccgggaatctctaacacaacacg 9328835  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||| ||||||| ||||||||| ||||||||||  || |||||||| |||||||||||||||||  ||||||||| |||||            |||||||    
T  9328836 caaatgatgtaagatggttacggtcatggaacgcggcatccacattacacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcac 9328935  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    ||||||||  |||||| |||||||| || || |  ||||||||| ||| |||||||||| ||||||||||||||    
T  9328936 tctattctagccgtgtggcacaaccagtagtgatggatgtttatgaacatcttgccattgctgccatgcatcta 9329009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 37 - 287
Target Start/End: Complemental strand, 22289279 - 22289017
Alignment:
Q  37 ctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgtaata 136  Q
    ||||||||||||||||||||||||||  |||||||||||| | |||| |||||| |||| | ||||| | ||||||||||||||||| ||||||||||||    
T  22289279 ctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccgaatgaattgcccacgggaatctctaacacaacacgcgaaagatgtaata 22289180  T
Q  137 tggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcactctattctgcccgt 224  Q
    || | ||| ||||| ||||  || |||||||||||||| ||||| ||||||  ||| |||| |||||            |||||||||||||||||||||    
T  22289179 tgttgacggtcatgaaacgcggcatccacattgcacttaaaccacgtctcacgcggcttctcccaaactgagttgttagcttgcactctattctgcccgt 22289080  T
Q  225 gttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||| || | |  | ||||||| |||||| || |||| |||||||||||||||||    
T  22289079 gttgcacaaccgatgatgagggttgtttatgaacctcctgtcattgctgccatgcatctagtg 22289017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 1581668 - 1581485
Alignment:
Q  23 agtaaggctactgtctccccc-tccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacac 121  Q
    |||||||||||||  |||||| || |||||| | ||||||| ||  ||||||||| |||||||||| ||||| ||  | | | |||||||| ||||||||    
T  1581668 agtaaggctactgcatcccccctcaaaaactataatatttgccctctgccatttcgtttgagcccggataaactatccgctggagtctctagcacaacac 1581569  T
Q  122 gcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    ||||||||||||||||||||| | ||||||||||  || ||||||||||||||||||||  ||||  || |||||| |||||||    
T  1581568 gcaaaagatgtaatatggttatggtcatggaacgcagcatccacattgcacttcaaccacatctcgctcagtttctcccaaact 1581485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 30493738 - 30493926
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||||| | ||||||||| |||||||| || |||||| | || |  | | |||||||    
T  30493738 gacatcaagtaaggctactgcctcccc-tccaaaactgtcatacttgtctgctgccatttcgtttgagcctgagtaaattgcccatgagaatttctaaca 30493836  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    |||||||||||| ||||||  |||||||  |||||||| |   | |||| ||||||||| ||||| || || |||| |||||||||||||    
T  30493837 caacacgcaaaatatgtaagttggttacagtcatggaatgcgacatccatattgcactttaaccacgtttcgttcgatttcttccaaact 30493926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 17877460 - 17877280
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||  |||||||||||| ||||||||||||  ||| ||| ||||| ||||||| ||||| || | | || || ||||| |||| | |||||    
T  17877460 agtaaggctacttcctccccctccaatactgtcatatttccccgctgcgatttcgtttgagcacgaatgaacttcccatgggagtctataacgccacacg 17877361  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa 203  Q
    ||| | |||||||||||||||  ||||||||||   | ||||||||||| |||||||| |||||  ||||||||| |||||    
T  17877360 caacaaatgtaatatggttacaatcatggaacgcgacatccacattgcatttcaaccacgtctcgctcggtttctcccaaa 17877280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 30824610 - 30824763
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttg-agcccgaataaattactcacggaagtctctaacacaacac 121  Q
    ||||||||||||| |||||  | |||||||||||||||| |||| || | |||  |||  ||||||||||||||| || ||| ||||||||||||||||     
T  30824610 agtaaggctactgcctccc--ttcaaaactgtcatatttatccgctgtctttttttttttagcccgaataaattattcgcggcagtctctaacacaacat 30824707  T
Q  122 gcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaa 177  Q
    |||||||||||||||||  |||  ||||| || || || |||||||||||||||||    
T  30824708 gcaaaagatgtaatatgactacagtcatgaaatgtagcatccacattgcacttcaa 30824763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 37 - 287
Target Start/End: Original strand, 29201104 - 29201360
Alignment:
Q  37 ctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaatt--actcacggaagtctctaacacaacacgcaaaagatgtaa 134  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||||||||||| |   | |||   ||||||||| |||||| ||||||||| |||    
T  29201104 ctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccgaataaactggccacacatgagtctctaatacaacatgcaaaagatataa 29201203  T
Q  135 tatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcactctattctgccc 222  Q
    |||||        |||||| |  || || ||||||||||||||||| ||||| | |||||||| |||||            |||||||| |||| || ||    
T  29201204 tatgg--------atggaaagcggcatcaacattgcacttcaaccacgtctcgtgcggtttctcccaaactgagctattaccttgcactgtattttgtcc 29201295  T
Q  223 gtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||| |||| |  | ||||||| ||||||||| |||| ||| |||||||||||||    
T  29201296 gtgttgcacaaccgatggtgagggctgtttatgaacctcttgtcattgctgtcatgcatctagtg 29201360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 34578437 - 34578528
Alignment:
Q  47 aaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgtaatatg 138  Q
    ||||||||||||||||  ||||| |||||| | |||||||||||||||| | ||||| | | || |||||||||||||||||||||||||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgcccacgggaatttcgaacacaacacgcaaaagatgtaatatg 34578528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 283
Target Start/End: Original strand, 11745970 - 11746048
Alignment:
Q  205 ttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatct 283  Q
    ||||||||||||||| | ||||||||||||||||||| |  | |||||||  |||| ||||||||| || |||||||||    
T  11745970 ttgcactctattctgtctgtgttgcacaaccggtggtgagggttgtttatgcacctgttgccattattgtcatgcatct 11746048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 1581456 - 1581391
Alignment:
Q  222 cgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    ||||||| ||||||| |||| |  ||||||||| ||||||||||||||  ||||| ||||||||||    
T  1581456 cgtgttgtacaaccgatggtgagggatgtttatgaacctcttgccattgttgccaagcatctagtg 1581391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 29655794 - 29656076
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaaca 115  Q
    |||||| ||||||||||||| ||| ||||||||||| |||||||||| ||| ||||||||  |||||||||||||||||| | ||||| || ||||||||    
T  29655794 gacatcgagtaaggctactgcctctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccgaataaattgcccacgggagcctctaaca 29655893  T
Q  116 caacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ 203  Q
    |||||  |||||||||||| | ||||||| ||||||||||  || |||||||| |||||||||||||||||| |||||||||||||||                
T  29655894 caaca-acaaaagatgtaagagggttacgatcatggaacgcggcatccacattacacttcaaccatgtctcactcggtttcttccaaactgagatattac 29655992  T
Q  204 cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| |||||| ||||| ||||||||| |||||||| |   |||||||| |||||||| ||||| |||||||||||||||||    
T  29655993 cttgcattctattatgcccatgttgcacacccggtggtgatgaatgtttatgaacctctttccattgctgccatgcatctagtg 29656076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 28537922 - 28538196
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||  ||||| ||||||||  ||| ||||||||| |||||||||||||||||| | |  || ||||||||||||||||||    
T  28537922 agtaaggctactgcctccccctc--aaactatcatattttcccgctgccatttcgtttgagcccgaataaattgcccgtgggagtctctaacacaacacg 28538019  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    ||||| |||||||||||||||| ||||||||||  || |||||||||||||||||||| ||||| |||||||||| |||||            |||||||    
T  28538020 caaaatatgtaatatggttacgatcatggaacgcagcatccacattgcacttcaaccacgtctcgttcggtttctcccaaactgaattgttaccttgcac 28538119  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||| | ||||||||||| |||| ||||||| | || ||||||| ||||||||||||||  || |||||||||||||    
T  28538120 tctactgtgcccgtgttgtacaatcggtggtgagtggtgtttatgaacctcttgccattgttgacatgcatctagtg 28538196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 32577183 - 32577454
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||| |  ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| | |  |||| ||||||||||||||||    
T  32577183 agtaaggctagtacctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgccccgggaa-tctctaacacaacacg 32577281  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||||||||| ||||||| | ||||||||||  || ||||||||||||||||||||||||||  ||||||||| |||||            |||||||    
T  32577282 caaaagatgtaagatggttaaggtcatggaacgcagcatccacattgcacttcaaccatgtctc-ctcggtttctcccaaactgagttgttaccttgcac 32577380  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    | ||||||| ||||||||||||| |||| || |  ||||||||| |||||||||||||| | ||||||||||||    
T  32577381 tatattctggccgtgttgcacaaacggtagtgacggatgtttatgaacctcttgccattgccgccatgcatcta 32577454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 21321579 - 21321303
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | | ||  ||||||||| |||||| |    
T  21321579 agtaaggctattgtctccccctccaaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagagtctctaatacaacatg 21321480  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||| ||||||||||||||| ||||||||||   | |||||||||||||||||||| || ||  ||| ||||| |||||            |||||||    
T  21321479 caaaagttgtaatatggttacggtcatggaacgcaacatccacattgcacttcaaccacgtttcgctcgatttctcccaaactgtgttgttgccttgcac 21321380  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| ||| ||||||| ||||||||| || |  ||||||||| ||| |||||||||| |||||| ||||||||||    
T  21321379 tctattatgctcgtgttgtacaaccggtagtgagggatgtttatgaacatcttgccattgctgccaagcatctagtg 21321303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 2064905 - 2064632
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||| ||| ||||||||||||| ||| || |||||  |||||||||||||||||||  | ||| ||||||||||||||||||    
T  2064905 agtaaggctactgcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccgaataaattatccgcgggagtctctaacacaacacg 2064806  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |||  || |||||| |||||            |||||||    
T  2064805 cagaggatgtaatatggttacggtcatggaacgtggcgtccacattgcacttcaaccacgactcgctcagtttctcccaaactgagttgttaccttgcac 2064706  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    |||||| || |||||||||||||||| |||| || | ||||||  ||||||||||||||  || ||||||||||    
T  2064705 tctattttgtccgtgttgcacaaccgatggtgaaggttgtttacgaacctcttgccattgttgtcatgcatcta 2064632  T

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Target: chr4; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 37245982 - 37246169
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||| | | ||| |||||||||||||    
T  37245982 catcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccgaataaatttccctcgggagtctctaacaca 37246081  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    ||| ||| | ||||||| | | ||||| ||||||||||  || ||||||||||||||||||||||||||  ||||||||| |||||||    
T  37246082 acatgcagaggatgtaagacgattacggtcatggaacgcggcatccacattgcacttcaaccatgtctcgctcggtttctcccaaact 37246169  T

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Target: chr4; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 23 - 287
Target Start/End: Complemental strand, 49951365 - 49951089
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||||   | ||  | ||||||||||| || |    
T  49951365 agtaaggctactgcctccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccgaataaattggccgcgagaatctctaacacagcatg 49951266  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    ||||||||||||||||||| || |||||||| |  || ||||||||||||||||||||||||||  ||||||||| | |||            |||||||    
T  49951265 caaaagatgtaatatggttgcggtcatggaatgcggcatccacattgcacttcaaccatgtctcgctcggtttctccaaaactgagttgttaccttgcac 49951166  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||| |||| |||||||||||| |||||| |  | ||||||| ||||||||||||||  |||||||| |||||||    
T  49951165 tctattatgcctgtgttgcacaactggtggtgagcgttgtttatgaacctcttgccattgttgccatgcttctagtg 49951089  T

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Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 18442280 - 18442461
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| ||||||||||||  ||| | ||||||| |||||||||||||||||| | || || ||||||||||||||||||    
T  18442280 agtaaggctactgcctccccctccaatactgtcatattttcccgcttccatttcgtttgagcccgaataaattgcccatgggagtctctaacacaacacg 18442379  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaac 204  Q
    |||||| |||||||||||| || ||||||||||   | ||| |||||||||||||||| |||||  ||||||||| ||||||    
T  18442380 caaaagttgtaatatggttgcggtcatggaacgcgacatccgcattgcacttcaaccacgtctcgctcggtttctcccaaac 18442461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 56065686 - 56065405
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||  ||||| |||||| ||||||||||||| |||| | ||||| ||||||||| |||    
T  56065686 catcgagtaaggcaactgcctccccctccaaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaaca 56065587  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------ct 205  Q
    |||||| |||||||||||||| | ||| ||||| |||    | |||||||||||||||||||| ||||||  | |||||| |||||            ||    
T  56065586 acacgcgaaagatgtaatatgttgacggtcatgaaacacgacatccacattgcacttcaaccacgtctcacacagtttctcccaaactgagttgttagct 56065487  T
Q  206 tgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
    |||||||||||||||||||||||||||| || ||   |  | ||||||| |||||| ||||||| |||||||||||||||||    
T  56065486 tgcactctattctgcccgtgttgcacaatcgatgacgagggttgtttatgaacctcctgccattgctgccatgcatctagtg 56065405  T

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Target: chr4; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 51259657 - 51259941
Alignment:
Q  16 gacatcaagtaaggctactgtctcccc-ctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaac 114  Q
    |||||| |||||||| |||| |||||| ||||||||||||||||||||  |||||||||||| ||||||||||||| |||| | ||||  ||||||||||    
T  51259657 gacatcgagtaaggcaactgcctcccccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctctaac 51259756  T
Q  115 acaacacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa----------- 203  Q
    ||||||  | |||||||||||||| | ||| ||||| ||||  || ||||||||||| |||||||| ||||||  |||||||| |||||               
T  51259757 acaacatacgaaagatgtaatatgttgacggtcatgaaacgcggcatccacattgcagttcaaccacgtctcacgcggtttctcccaaactgagttgtta 51259856  T
Q  204 -cttgcactctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatctagtg 287  Q
     |||||||||||||||||||||||||| ||| || || | |  | ||||||| |||||| ||||||| |||||||||||||||||    
T  51259857 gcttgcactctattctgcccgtgttgcgcaatcgatgatgagggttgtttatgaacctcctgccattgctgccatgcatctagtg 51259941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 51735101 - 51735288
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||  || || |||||| ||| ||||||||||||||    ||||||||||||||||||    
T  51735101 catcgagtaaggctactgcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccgaataaattgtcaacggaagtctctaacaca 51735200  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    |||| |||||||||||| ||||||||  ||||||||||  || ||||| |||||||||||||| |||||  ||||||||  |||||||    
T  51735201 acacacaaaagatgtaagatggttacaatcatggaacgcggcatccacgttgcacttcaaccacgtctcgctcggtttcgcccaaact 51735288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 23 - 204
Target Start/End: Complemental strand, 55735061 - 55734880
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| |||||||||||| |||||||||||||  || | ||||||| |||||||||||| ||||| |||| || ||||||||||||||||||    
T  55735061 agtaaggctactgcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccgaacaaattgctcatgggagtctctaacacaacacg 55734962  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaac 204  Q
    |||||||||||||||||||  | ||||||| ||   | ||||||||||||||||||||  ||||  ||||||||| ||||||    
T  55734961 caaaagatgtaatatggttgagatcatggagcgcgacatccacattgcacttcaaccacatctcgctcggtttctcccaaac 55734880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 34 - 205
Target Start/End: Original strand, 43840453 - 43840624
Alignment:
Q  34 tgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacgcaaaagatgta 133  Q
    ||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||||||||   ||||| |||||||||||||| ||||||||||||||    
T  43840453 tgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgaccccgaataaattgtccacgggagtctctaacacaaaacgcaaaagatgta 43840552  T
Q  134 atatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    | ||||||| |||||| |||||  || ||||| ||| |||||||||| ||||| | |||| ||| |||||||    
T  43840553 agatggttatgctcatagaacgcggcatccacgttgaacttcaaccacgtctcgtgcggtctctcccaaact 43840624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 41835446 - 41835626
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    |||||||||||||  ||||||||||||||||||||||||| | | || |||||  ||||||||||||||||||     ||  ||||||||||||||||||    
T  41835446 agtaaggctactgcatccccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacg 41835545  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa 203  Q
    |||||| ||||||||||||||| ||| ||||||| || |||||||||||||||||||| |||||  ||| ||||| |||||    
T  41835546 caaaagttgtaatatggttacgttcaaggaacgtggcatccacattgcacttcaaccacgtctcgctcgatttctcccaaa 41835626  T

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Target: chr4; HSP #15
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 23 - 284
Target Start/End: Original strand, 49119535 - 49119795
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||||||||| |||||||||| | ||||||||||| ||||||||||||            |||| |||||||||||||||     
T  49119535 agtaaggctactgcctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa------------ggaa-tctctaacacaacaca 49119621  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa------------cttgcac 210  Q
    |||||||||||| ||||||||| ||||||||||  || |||||||||||||||| |||||||||  | ||||| | |||||            ||| |||    
T  49119622 caaaagatgtaagatggttacggtcatggaacgcggcatccacattgcacttcagccatgtctcgcttggtttatcccaaactgggttgttaccttacac 49119721  T
Q  211 tctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    ||||||||| |||||| ||||||||  | || |  ||||||||| |||||||||||||| ||||||||||||||    
T  49119722 tctattctggccgtgtggcacaaccaatagtgatggatgtttatgaacctcttgccattgctgccatgcatcta 49119795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 28426235 - 28425974
Alignment:
Q  23 agtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacacaacacg 122  Q
    ||||||||||||| ||||||||||||||| |||||||||| | ||||||||||| ||||||||||||            |||| |||||||||||||||     
T  28426235 agtaaggctactgcctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccgaa------------ggaa-tctctaacacaacaca 28426149  T
Q  123 caaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaa-------------cttgca 209  Q
    |||||||||||| ||||||||| ||||||||||  || |||||||||||||||| |||||||||  | ||||| | |||||             ||| ||    
T  28426148 caaaagatgtaagatggttacggtcatggaacgcggcatccacattgcacttcagccatgtctcgcttggtttatcccaaactggggttgttaccttaca 28426049  T
Q  210 ctctattctgcccgtgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatcta 284  Q
    |||||||||| |||||| ||||||||  | || |  ||||||||| |||||||||||||| ||||||||||||||    
T  28426048 ctctattctggccgtgtggcacaaccaatagtgatggatgtttatgaacctcttgccattgctgccatgcatcta 28425974  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 24990051 - 24990093
Alignment:
Q  16 gacatcaagtaaggctactgtctccccctccaaaactgtcata 58  Q
    |||||| |||||||||||||||||| | |||||||||||||||    
T  24990051 gacatcgagtaaggctactgtctccacttccaaaactgtcata 24990093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 37246204 - 37246262
Alignment:
Q  224 tgttgcacaaccggtggttaatgatgtttataaacctcttgccattactgccatgcatc 282  Q
    ||||||||||||||| || |  ||||||||| |||||| ||||||| ||||||||||||    
T  37246204 tgttgcacaaccggtagtgagggatgtttatgaacctcatgccattgctgccatgcatc 37246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 243 - 56
Alignment:
Q  18 catcaagtaaggctactgtctccccctccaaaactgtcatatttgtccgttgccatttcatttgagcccgaataaattactcacggaagtctctaacaca 117  Q
    |||| |||||||| |||| |||||||||| |||||||||||||||  ||||| |||||| ||||||||||||| |||| | ||||| ||||||||| |||    
T  243 catcgagtaaggcaactgcctccccctcccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaaca 144  T
Q  118 acacgcaaaagatgtaatatggttacgctcatggaacgttgcgtccacattgcacttcaaccatgtctcattcggtttcttccaaact 205  Q
    |||||| ||||||   ||||| | ||| ||||| |||    | |||||||||||||||||||| ||||||  | |||||| |||||||    
T  143 acacgcgaaagatngtatatgttgacggtcatgaaacacgacatccacattgcacttcaaccacgtctcacacagtttctcccaaact 56  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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