View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_232 (Length: 288)
Name: NF11737A_low_232
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_232 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 2842809 - 2842537
Alignment:
| Q |
16 |
ggaaaaggaacttgaaacttataggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagc |
115 |
Q |
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| T |
2842809 |
ggaaaaggaacttgaaacttttaggcaaatgagtttgacagaaagttgcgagttgcattcgaagtcagcagaggtgcggcttagtgaatggaaacgaagc |
2842710 |
T |
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| Q |
116 |
tcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacctattgttaagcaagattgtacgaataatacagaacatgaagagt |
215 |
Q |
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| T |
2842709 |
tcgccactttcatttgaaacatgtgatgatccatcacagatcgaaagtactgtacttattgttaagcaagattgtaccaataatacagaacatgaagagt |
2842610 |
T |
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| Q |
216 |
tggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctga |
288 |
Q |
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| T |
2842609 |
tggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctga |
2842537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 2838590 - 2838511
Alignment:
| Q |
209 |
gaagagttggataaaaacactgaatacaaggatcgagcatgtgatgatttgcatagctccttttatgatactgagtctga |
288 |
Q |
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| T |
2838590 |
gaagaggtggaggaaaacagtcaacacaaggatcaagcgtgcaatgatatgcatagatccttttatgatactgagtctga |
2838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 2838679 - 2838645
Alignment:
| Q |
120 |
cactttcatttgaaacatgtgatgatccatcacag |
154 |
Q |
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| T |
2838679 |
cactttcatttgaaacttgtgatgatccatcacag |
2838645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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