View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_234 (Length: 288)
Name: NF11737A_low_234
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_234 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 219341 - 219610
Alignment:
| Q |
1 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttggacgtgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
219341 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttggacgtgga |
219437 |
T |
|
| Q |
101 |
cgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttagacttgggg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
219438 |
cgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttagacttgggg |
219537 |
T |
|
| Q |
200 |
cacacaatttgaannnnnnnnnnnnatgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
219538 |
cacacaatttgaatttattttttttatgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
219610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 695901 - 696170
Alignment:
| Q |
1 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttggacgtgga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
695901 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttggacgtgga |
695997 |
T |
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| Q |
101 |
cgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttagacttgggg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
695998 |
cgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttagacttgggg |
696097 |
T |
|
| Q |
200 |
cacacaatttgaannnnnnnnnnnnatgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
696098 |
cacacaatttgaatttattttttttatgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
696170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 732964 - 733233
Alignment:
| Q |
1 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttggacgtgga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
732964 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttggacgtgga |
733060 |
T |
|
| Q |
101 |
cgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttagacttgggg |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
733061 |
cgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttagacttgggg |
733160 |
T |
|
| Q |
200 |
cacacaatttgaannnnnnnnnnnnatgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
733161 |
cacacaatttgaatttattttttttatgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
733233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 856860 - 857129
Alignment:
| Q |
1 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctactactactactattactcatcaagatgcttgggttttggacgtgga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
856860 |
tcatcgtggatgaaattatgttttatgcatctcagattactctttctacttctac---tactactactactcatcaagatgcttgggttttggacgtgga |
856956 |
T |
|
| Q |
101 |
cgacacttgtatctctaatattccttattataaagctaagcgatttgggtatgtttctttctttctttcgta-nnnnnnnattatatgttagacttgggg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
856957 |
cgacacttgtatctctaatattccttattataaagctaaacgatttgggtatgtttctttctttctttcgtattttttttattatatgttagacttgggg |
857056 |
T |
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| Q |
200 |
cacacaatttgaannnnnnnnnnnnatgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
857057 |
cacacaatttgaatttattttttttatgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
857129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 215354 - 215401
Alignment:
| Q |
225 |
atgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
215354 |
atgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
215401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 688718 - 688765
Alignment:
| Q |
225 |
atgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
688718 |
atgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
688765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 728977 - 729024
Alignment:
| Q |
225 |
atgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
728977 |
atgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
729024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 852872 - 852919
Alignment:
| Q |
225 |
atgatatgatatttggtggcagatgcgacccatttgattcggtgatgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
852872 |
atgatatgatatttggtggcagatgcgacccatttgattcggcgatgt |
852919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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