View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_235 (Length: 287)

Name: NF11737A_low_235
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_235
NF11737A_low_235
[»] chr3 (4 HSPs)
chr3 (87-287)||(1071048-1071241)
chr3 (87-195)||(1086797-1086905)
chr3 (1-86)||(1070787-1070872)
chr3 (87-188)||(1046330-1046431)
[»] chr7 (2 HSPs)
chr7 (2-86)||(29201277-29201360)
chr7 (239-275)||(12217853-12217889)
[»] chr6 (1 HSPs)
chr6 (239-286)||(22300512-22300559)
[»] chr4 (2 HSPs)
chr4 (2-93)||(43840628-43840718)
chr4 (5-93)||(2064632-2064719)
[»] chr1 (2 HSPs)
chr1 (239-286)||(13640717-13640764)
chr1 (239-275)||(13260553-13260589)
[»] chr5 (1 HSPs)
chr5 (239-275)||(31302946-31302982)
[»] chr2 (1 HSPs)
chr2 (239-275)||(38855726-38855762)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 1071241 - 1071048
Alignment:
Q  87 ataacaaacaatatcataggaagaatattggccattttgcatttattgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattg 186  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1071241 ataacaaacaatatcataggaagaatattggccattttgcattgaatgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattg 1071142  T
Q  187 actttccttnnnnnnnnnnnnnnnnnnnncatgttaaattgacttgggactagggaatgagtcgggccgagccgggctttgattaaataagtttggccta 286  Q
    |||||||||                     ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||    
T  1071141 actttccttaaaaaaaaaaaaaa-------atgttaaattgacttgggactagggaacgagtcgggccgagccgggctctgattaaataggtttgaccta 1071049  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 1086905 - 1086797
Alignment:
Q  87 ataacaaacaatatcataggaagaatattggccattttgcatttattgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattg 186  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  1086905 ataacaaacaatatcataggaagaatattggtcattttgcattgattgagtttgaggcagacacacattttatgtttgtgcgtttatatatgctaaattg 1086806  T
Q  187 actttcctt 195  Q
    |||||||||    
T  1086805 actttcctt 1086797  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 1070787 - 1070872
Alignment:
Q  1 tcactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaag 86  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1070787 tcactagatgcctgatagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaag 1070872  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 1046431 - 1046330
Alignment:
Q  87 ataacaaacaatatcataggaagaatattggccattttgcatttattgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattg 186  Q
    ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  1046431 ataacaaacaatatcatagaaagaatattggtcattttgcattgattgaatttgatgcagacacacgttggatgtttgtgtgtttagatatgctaaattg 1046332  T
Q  187 ac 188  Q
    ||    
T  1046331 ac 1046330  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 29201360 - 29201277
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaag 86  Q
    |||||||||||||||||||||||||||||  |||| ||||| |  |||||| || |||| ||||||||||| |||| || |||||    
T  29201360 cactagatgcatgacagcaatgacaagaggttcat-aaacagccctcaccatcggttgtgcaacacggacaaaatacagtgcaag 29201277  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 12217853 - 12217889
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaata 275  Q
    ||||||||||| || ||||||||||||||||||||||    
T  12217853 gggaatgagtcaggtcgagccgggctttgattaaata 12217889  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 22300559 - 22300512
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaataagtttggccta 286  Q
    ||||||||| ||||||||||||||||||| ||||||| || |||||||    
T  22300559 gggaatgagccgggccgagccgggctttgcttaaatatgtctggccta 22300512  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 43840718 - 43840628
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaa 93  Q
    |||||||||||||||| ||||||||||||| |||||||| | |  ||||||||| || | ||||||   |||||||||| |||||| |||||    
T  43840718 cactagatgcatgacaacaatgacaagagattcataaaa-agccctcaccaccgattatgcaacactagcataatagagtgcaagacaacaa 43840628  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 2064632 - 2064719
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaa 93  Q
    ||||||||||||| ||||| ||||||  || |||| ||||  |||||| || |||| ||||||||||| ||||||| ||||| ||||||    
T  2064632 tagatgcatgacaacaatggcaagaggttcgtaaa-caaccttcaccatcggttgtgcaacacggacaaaatagagtgcaaggtaacaa 2064719  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 239 - 286
Target Start/End: Original strand, 13640717 - 13640764
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaataagtttggccta 286  Q
    ||||||||| ||||||||||||||||||| ||||||| || |||||||    
T  13640717 gggaatgagccgggccgagccgggctttgcttaaatatgtctggccta 13640764  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 13260589 - 13260553
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaata 275  Q
    |||||||||||||||||||||||| |||| |||||||    
T  13260589 gggaatgagtcgggccgagccgggatttgcttaaata 13260553  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Original strand, 31302946 - 31302982
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaata 275  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  31302946 gggaatgagccgggccgagccgggctttgcttaaata 31302982  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 275
Target Start/End: Complemental strand, 38855762 - 38855726
Alignment:
Q  239 gggaatgagtcgggccgagccgggctttgattaaata 275  Q
    |||||||||||||||||||| |||||||| |||||||    
T  38855762 gggaatgagtcgggccgagcggggctttgcttaaata 38855726  T

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