View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_236 (Length: 287)
Name: NF11737A_low_236
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_236 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 22291877 - 22292126
Alignment:
| Q |
16 |
atataaacttggaaataatgaaagttgagaaataagagaagatgaaagtgaggggtggaactgagaatgaaaccgaatggttttcattcatttggctttg |
115 |
Q |
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| T |
22291877 |
atataaacttggaaataatgaaaggtgagaaataagagaaga----------------aactgagaatgaaaccgaatggttttcattcatttggctttg |
22291960 |
T |
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| Q |
116 |
atgtgaagggtgaggcttctggtgaattcttgaggtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatcagagac |
215 |
Q |
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| T |
22291961 |
atgtgaagggtgaggcttctggtgaattcttgaagtcaaatacaacaacaaaattagtggatccgattcaatcaactattaccctgttctcatcagagcc |
22292060 |
T |
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| Q |
216 |
ccaactgtggttgtggtgtgaatctaattgcaaatttacacaattaatgaatggaattgaagaaac |
281 |
Q |
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| T |
22292061 |
ccaaatgtgattgtgttgtgaatctaattgcaaatttacaaaattaatgaatgcaattgaagaaac |
22292126 |
T |
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Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 53559297 - 53559393
Alignment:
| Q |
51 |
gagaagatgaaagtgaggggtggaactgagaatgaaaccgaatggttttcattcatttggctttgatgtgaagggtgaggcttctggtgaattcttg |
147 |
Q |
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| T |
53559297 |
gagaagatgaaagtgaggggtgaaactgagattgaaaccgaatggttttcattcatttggctttgatgtgaggggtcaggcttctggtgaattcttg |
53559393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 17682554 - 17682459
Alignment:
| Q |
187 |
tcaactattaccctgttctcatcagagacccaactgtggttgtggtgtgaatctaattgcaaattta-cacaattaatgaatggaattgaagaaac |
281 |
Q |
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| T |
17682554 |
tcaactatgaccctattctcgtcagagacccaaatctgactgtgttgtgaacctaattgcaaatttattaccaataatgaatggaattgaagaaac |
17682459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 15434052 - 15434152
Alignment:
| Q |
181 |
attcaatcaactattaccctgttctcatcagagacccaactgtggttgtggtgtgaatctaattgcaaatttacacaattaatgaatggaattgaagaaa |
280 |
Q |
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| T |
15434052 |
attcaatcaactattagcctgttctcatcagagacccaaatctgattctgttgtgaatctaattgcaaatttacaaaattaatgaatggaattgaagaaa |
15434151 |
T |
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| Q |
281 |
c |
281 |
Q |
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| T |
15434152 |
c |
15434152 |
T |
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