View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_239 (Length: 286)

Name: NF11737A_low_239
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_239
NF11737A_low_239
[»] chr3 (8 HSPs)
chr3 (1-283)||(1070787-1071069)
chr3 (184-285)||(53200425-53200526)
chr3 (7-144)||(42340546-42340682)
chr3 (82-143)||(55199366-55199427)
chr3 (86-170)||(46007160-46007244)
chr3 (192-258)||(9797991-9798057)
chr3 (97-174)||(53496902-53496979)
chr3 (185-254)||(54739808-54739877)
[»] chr8 (10 HSPs)
chr8 (2-166)||(40588963-40589126)
chr8 (47-174)||(7127043-7127170)
chr8 (184-286)||(27209057-27209159)
chr8 (184-286)||(29442459-29442561)
chr8 (184-285)||(6627814-6627915)
chr8 (184-285)||(6635613-6635714)
chr8 (117-172)||(13414913-13414968)
chr8 (2-143)||(478327-478467)
chr8 (205-258)||(8109218-8109271)
chr8 (184-216)||(14266438-14266470)
[»] chr4 (24 HSPs)
chr4 (2-174)||(49951089-49951260)
chr4 (2-174)||(51259770-51259941)
chr4 (2-173)||(28538026-28538196)
chr4 (2-174)||(29655905-29656076)
chr4 (5-174)||(2064632-2064800)
chr4 (5-174)||(32577287-32577454)
chr4 (2-174)||(43840547-43840718)
chr4 (2-146)||(56065405-56065548)
chr4 (2-172)||(21321303-21321472)
chr4 (184-258)||(23601971-23602045)
chr4 (5-174)||(49119627-49119795)
chr4 (38-174)||(55734820-55734956)
chr4 (88-174)||(37246092-37246178)
chr4 (184-286)||(43138159-43138261)
chr4 (184-258)||(1458339-1458413)
chr4 (5-174)||(28425974-28426143)
chr4 (184-258)||(34458097-34458171)
chr4 (88-174)||(51735211-51735297)
chr4 (184-286)||(47305115-47305218)
chr4 (184-258)||(7290714-7290788)
chr4 (184-258)||(47764665-47764738)
chr4 (184-258)||(53995728-53995802)
chr4 (184-258)||(36445119-36445193)
chr4 (204-258)||(31763937-31763991)
[»] chr5 (20 HSPs)
chr5 (5-174)||(22767497-22767665)
chr5 (2-156)||(8387862-8388015)
chr5 (2-174)||(41940977-41941148)
chr5 (5-172)||(15988991-15989157)
chr5 (2-174)||(30223039-30223210)
chr5 (184-258)||(31335313-31335387)
chr5 (82-170)||(16074591-16074679)
chr5 (74-174)||(20204802-20204902)
chr5 (2-174)||(27533147-27533318)
chr5 (184-258)||(10541493-10541567)
chr5 (184-258)||(34583478-34583552)
chr5 (122-174)||(12660211-12660263)
chr5 (97-173)||(27292304-27292380)
chr5 (184-258)||(12621288-12621362)
chr5 (1-147)||(34653859-34654003)
chr5 (184-251)||(31303007-31303074)
chr5 (184-258)||(5926657-5926731)
chr5 (88-158)||(26597713-26597783)
chr5 (192-258)||(40897512-40897578)
chr5 (107-172)||(25730688-25730753)
[»] chr2 (10 HSPs)
chr2 (2-172)||(88335-88504)
chr2 (2-166)||(12130886-12131049)
chr2 (184-258)||(30487668-30487742)
chr2 (184-258)||(40356093-40356167)
chr2 (184-257)||(15440705-15440778)
chr2 (184-251)||(34639786-34639853)
chr2 (184-258)||(38855636-38855710)
chr2 (2-174)||(34696142-34696313)
chr2 (2-174)||(34718554-34718725)
chr2 (184-258)||(5305451-5305525)
[»] chr7 (13 HSPs)
chr7 (5-174)||(9328841-9329009)
chr7 (2-174)||(16731709-16731880)
chr7 (2-174)||(17709843-17710014)
chr7 (2-174)||(22289017-22289188)
chr7 (63-173)||(17877244-17877354)
chr7 (2-154)||(29201209-29201360)
chr7 (184-286)||(4920215-4920317)
chr7 (184-256)||(3526114-3526186)
chr7 (2-174)||(1581391-1581562)
chr7 (184-258)||(26425154-26425228)
chr7 (184-258)||(9458665-9458739)
chr7 (57-173)||(30493850-30493966)
chr7 (184-258)||(5734386-5734460)
[»] chr6 (11 HSPs)
chr6 (38-174)||(14679970-14680106)
chr6 (88-174)||(15606234-15606320)
chr6 (184-258)||(22293437-22293511)
chr6 (184-258)||(4127278-4127352)
chr6 (3-174)||(28106916-28107086)
chr6 (184-280)||(16166725-16166821)
chr6 (184-258)||(16464132-16464206)
chr6 (226-258)||(6139152-6139184)
chr6 (2-110)||(19364249-19364356)
chr6 (184-286)||(22300433-22300535)
chr6 (82-174)||(11731889-11731981)
[»] chr1 (13 HSPs)
chr1 (60-172)||(5609172-5609284)
chr1 (4-174)||(25682429-25682598)
chr1 (57-174)||(48949964-48950081)
chr1 (184-258)||(13260463-13260537)
chr1 (184-258)||(40708298-40708372)
chr1 (2-143)||(51113091-51113231)
chr1 (71-166)||(4395003-4395098)
chr1 (184-258)||(35361866-35361940)
chr1 (2-172)||(36733469-36733641)
chr1 (184-258)||(12569723-12569797)
chr1 (74-165)||(24538357-24538448)
chr1 (184-286)||(13640741-13640843)
chr1 (184-280)||(3289050-3289146)
[»] scaffold0446 (1 HSPs)
scaffold0446 (57-146)||(16-105)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 1070787 - 1071069
Alignment:
Q  1 tcactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtt 100  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  1070787 tcactagatgcctgatagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaaggtaaaacctcagtt 1070886  T
Q  101 taggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatcgtaaccatattttaaaaaggtcagtc 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  1070887 taggagaaaccgcgcgagacatggttgaactgcaatgtggatgttgccttccatgatcgtaaccatcttacatcgtaaccatcttttaaaaagatcagtc 1070986  T
Q  201 cagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
     |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||  |||||| ||||| ||||||||||    
T  1070987 tagacttaaaataaagtcattgataggtaaaaggccaaggctcgggccttagttttttcaattaggtcaaacctatttaatca 1071069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 184 - 285
Target Start/End: Original strand, 53200425 - 53200526
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    |||| |||||||||| |||| ||||||||||||||  |||||||||||| |||||||||||| ||||||||||||  |||||||| | ||||||||| ||    
T  53200425 ttttgaaaaggtcaggccaggcttaaaataaagtctttgataggtaaaacgccaaggcttagaccttagttttttcaattaggcctagcttatttaagca 53200524  T
Q  284 aa 285  Q
    ||    
T  53200525 aa 53200526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 42340682 - 42340546
Alignment:
Q  7 gatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttaggag 106  Q
    ||||||||||| ||||| ||||||| ||||||| || |  ||||||||| |||| |||||||  || |||||||   |||  |||||||||||||  |||    
T  42340682 gatgcatgacaacaatggcaagagattcataaa-cagccctcaccaccggttgtgcaacacgtgcagaatagagtctaaggcaacaactcagtttgagag 42340584  T
Q  107 aaaccgcgtgagacatggttgaactgcaatgtggatgt 144  Q
    |||||| | ||||| |||||||| ||||||||||||||    
T  42340583 aaaccgtgcgagacgtggttgaagtgcaatgtggatgt 42340546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 55199366 - 55199427
Alignment:
Q  82 gcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatg 143  Q
    ||||| |||||||||||||| |||||||||||||||||  |||||||  |||||||||||||    
T  55199366 gcaagctaacaactcagtttgggagaaaccgcgtgagatgtggttgacgtgcaatgtggatg 55199427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 46007160 - 46007244
Alignment:
Q  86 gataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatctta 170  Q
    |||||||||||||||| ||| ||||   | ||||| |||||||| ||||||||||||| ||  |||||| || ||||||||||||    
T  46007160 gataacaactcagtttgggaaaaacaaagcgagacgtggttgaagtgcaatgtggatgccgtgttccattattgtaaccatctta 46007244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 9798057 - 9797991
Alignment:
Q  192 aggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||| |||  ||||||||| || |  |||||||||||||| |||||||||||| ||||||||||    
T  9798057 aggtcagaccaagcttaaaatatagcctttgataggtaaaaggtcaaggcttaggctttagtttttt 9797991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 53496902 - 53496979
Alignment:
Q  97 agtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    ||||| ||||||||||   ||| ||||||| || ||||||||||| | ||| |||||||| ||||||||| |||||||    
T  53496902 agtttgggagaaaccgaccgagtcatggttaaagtgcaatgtggacgccgcgttccatgaccgtaaccatattacatc 53496979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 54739808 - 54739877
Alignment:
Q  185 tttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtt 254  Q
    |||||||||| ||| |||  ||||||||||||    ||| | ||||||||||||||||||||||||||||    
T  54739808 tttaaaaaggccagaccatgcttaaaataaagcatttgacaagtaaaaggccaaggcttaggccttagtt 54739877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 40589126 - 40588963
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| || ||||| ||||||  ||||||| || |  ||||||||| |||| |||||||| ||||| |||| ||||| ||||||||||||||    
T  40589126 cactagatgcatggcaacaatggcaagaggttcataaa-cagccctcaccaccggttgtgcaacacgggcataacagagtgcaaggtaacaactcagttt 40589028  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccat 166  Q
     |||||||||| ||||||| |||||||| ||||| ||||||| ||| |||||||| |||||||||    
T  40589027 gggagaaaccgagtgagacgtggttgaagtgcaacgtggatgccgcgttccatgaacgtaaccat 40588963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 174
Target Start/End: Original strand, 7127043 - 7127170
Alignment:
Q  47 tcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcg 146  Q
    |||| |||| |||| |||||| | || ||||| | ||||| |||||||| ||||| |||||| ||| | |||||||||||||| || |||||||||| ||    
T  7127043 tcactaccggttgtgcaacacagccagaatagggggcaaggtaacaacttagtttgggagaagccgagcgagacatggttgaagtggaatgtggatgccg 7127142  T
Q  147 ccttccatgatcgtaaccatcttacatc 174  Q
    | |||||||| ||||||| |||||||||    
T  7127143 cgttccatgaacgtaaccgtcttacatc 7127170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 27209159 - 27209057
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    |||||||||||||||  ||||||||||||||||||  ||| |  ||||||| ||||||||| |||||||||||||  | |||||| ||| ||||||| ||    
T  27209159 ttttaaaaaggtcaggtcagacttaaaataaagtctatgacatataaaaggtcaaggcttatgccttagttttttcaactaggcctaacctatttaagca 27209060  T
Q  284 aag 286  Q
    |||    
T  27209059 aag 27209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 29442561 - 29442459
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    |||||||||||||||  |||||||||||||||| |  ||| | |||||||| ||||||||| |||||||||||||  | |||||| ||| ||||||| ||    
T  29442561 ttttaaaaaggtcaggacagacttaaaataaagcctttgacatgtaaaaggtcaaggcttaagccttagttttttcaactaggcctaacctatttaagca 29442462  T
Q  284 aag 286  Q
    |||    
T  29442461 aag 29442459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 6627915 - 6627814
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    |||||||||||||||  || |||||||||||||||  ||| | |||||||| ||| |||||| ||||||||||||  | ||||||| || ||||||| ||    
T  6627915 ttttaaaaaggtcaggtcaaacttaaaataaagtctttgacaagtaaaaggtcaaagcttagaccttagttttttcaactaggccagacctatttaagca 6627816  T
Q  284 aa 285  Q
    ||    
T  6627815 aa 6627814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 285
Target Start/End: Complemental strand, 6635714 - 6635613
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    |||||||||||||||  || |||||||||||||||  ||| | |||||||| ||| |||||| ||||||||||||  | ||||||| || ||||||| ||    
T  6635714 ttttaaaaaggtcaggtcaaacttaaaataaagtctttgacaagtaaaaggtcaaagcttagaccttagttttttcaactaggccagacctatttaagca 6635615  T
Q  284 aa 285  Q
    ||    
T  6635614 aa 6635613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 13414913 - 13414968
Alignment:
Q  117 agacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
    |||| |||||||| ||||||||||||||||  |||||||| ||||||||| |||||    
T  13414913 agacgtggttgaagtgcaatgtggatgtcgtgttccatgaacgtaaccatattaca 13414968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 478467 - 478327
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| |||||||| ||||||  |||| ||||| | |||||||  | |||| |||||| | || |||||||  |||| ||||| |||| |||    
T  478467 cactagatgcatggcagcaatggcaagaggttcat-aaacatccatcaccagtggttgtgcaacacaggcaaaatagagtccaaggtaacatctcaattt 478369  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatg 143  Q
     |||||||||  | ||||  |||||||| || ||||||||||    
T  478368 gggagaaaccaagcgagatgtggttgaagtgtaatgtggatg 478327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 8109271 - 8109218
Alignment:
Q  205 cttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||| |  |||  ||||||||||||| |||||||||||||||||||    
T  8109271 cttaaaataaagcctttgaccggtaaaaggccaaagcttaggccttagtttttt 8109218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 14266438 - 14266470
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaag 216  Q
    ||||||||||||||| |||||||||||||||||    
T  14266438 ttttaaaaaggtcagaccagacttaaaataaag 14266470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 49951089 - 49951260
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||| ||||| || ||||| ||||||  ||||||| ||||  ||||||||  |||| |||||| | |||||||||| ||||| ||||||||||||||    
T  49951089 cactagaagcatggcaacaatggcaagaggttcataaa-caacgctcaccaccagttgtgcaacacaggcataatagagtgcaaggtaacaactcagttt 49951187  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||| | |||||||||||||| ||||||||||||| ||| |||||||| || |||||| |||||||    
T  49951188 tggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcattccatgaccgcaaccatattacatc 49951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 51259941 - 51259770
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| |||||||| || |||  ||||||| ||||  ||| || || |||  |||||||| || ||||||| ||||| ||||||||||||||    
T  51259941 cactagatgcatggcagcaatggcaggaggttcataaa-caaccctcatcatcgattgcgcaacacgggcagaatagagtgcaagctaacaactcagttt 51259843  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||||||||||| |||||||||||||||||||||| ||| || ||||| ||| | ||| |||||||    
T  51259842 gggagaaaccgcgtgagacgtggttgaactgcaatgtggatgccgcgtttcatgaccgtcaacatattacatc 51259770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 173
Target Start/End: Complemental strand, 28538196 - 28538026
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| || ||||| ||||||  ||||||| || |  ||||||||| ||||||||||||| || | ||||| ||||| |||||| |||||||    
T  28538196 cactagatgcatgtcaacaatggcaagaggttcataaa-caccactcaccaccgattgtacaacacgggcacagtagagtgcaaggtaacaattcagttt 28538098  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacat 173  Q
     ||||||||||   ||||| |||||||| |||||||||||||  || |||||||||||||||||| ||||||    
T  28538097 gggagaaaccgaacgagacgtggttgaagtgcaatgtggatgctgcgttccatgatcgtaaccatattacat 28538026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 29656076 - 29655905
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| ||||||||  |||||  ||||||| ||   ||||||||||  ||| ||||| || |||||||||  ||||| ||| | ||||||||    
T  29656076 cactagatgcatggcagcaatggaaagaggttcataaa-cattcatcaccaccgggtgtgcaacatgggcataatagaatgcaaggtaatatctcagttt 29655978  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     | |||||||| |||||||||||||||| || |||||||||| ||| |||||||||||||||| |||||||||    
T  29655977 ggaagaaaccgagtgagacatggttgaagtgtaatgtggatgccgcgttccatgatcgtaaccctcttacatc 29655905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 2064632 - 2064800
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    ||||||||||||| ||||| ||||||  || |||| ||||  |||||| || |||| ||||||||||| ||||||| ||||| |||||||||||||| ||    
T  2064632 tagatgcatgacaacaatggcaagaggttcgtaaa-caaccttcaccatcggttgtgcaacacggacaaaatagagtgcaaggtaacaactcagtttggg 2064730  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||| | | ||| | |||||||| ||||||||||| | | | |||||||| ||||||||| |||||||    
T  2064731 agaaactgagcgagtcgtggttgaagtgcaatgtggacgccacgttccatgaccgtaaccatattacatc 2064800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 32577454 - 32577287
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    |||||||||| | |||||| ||||||  ||||||| || |  |||| |||| |||| |||||||| || |||| || ||||| |||||||||||||| ||    
T  32577454 tagatgcatggcggcaatggcaagaggttcataaa-catccgtcactaccgtttgtgcaacacggccagaatatagtgcaaggtaacaactcagtttggg 32577356  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||| | |||||||||||||| |||||||||||||  || |||||||| | |||||||||||||||    
T  32577355 agaaaccgag-gagacatggttgaagtgcaatgtggatgctgcgttccatgaccttaaccatcttacatc 32577287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 43840718 - 43840547
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||||||||| ||||||||||||| |||||||| | |  ||||||||| || | ||||||   |||||||||| |||||| ||||||| |||||    
T  43840718 cactagatgcatgacaacaatgacaagagattcataaaa-agccctcaccaccgattatgcaacactagcataatagagtgcaagacaacaacttagttt 43840620  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     ||||| |||||  ||||| |||||||| | ||| ||||||| ||| ||| |||| | |||||||||||||||    
T  43840619 gggagagaccgcacgagacgtggttgaagttcaacgtggatgccgcgttctatgagcataaccatcttacatc 43840547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 56065405 - 56065548
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| |||||||| || |||  ||||||| ||||  ||  || || |||| |||||||| || ||||||| ||||| ||||||||||||||    
T  56065405 cactagatgcatggcagcaatggcaggaggttcataaa-caaccctcgtcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagttt 56065503  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcg 146  Q
     |||||||| | ||||||| |||||||| ||||||||||||||||    
T  56065504 gggagaaactgtgtgagacgtggttgaagtgcaatgtggatgtcg 56065548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 21321303 - 21321472
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||| || |||||||| |||||   ||||||| || |  |||| |||| ||||||||||||  |||||||||| |||||  |||||| ||||||    
T  21321303 cactagatgcttggcagcaatggcaagatgttcataaa-catccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagttt 21321401  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
     ||||||| || | || || |||||||| |||||||||||||| || |||||||| ||||||||| |||||    
T  21321402 gggagaaatcgagcgaaacgtggttgaagtgcaatgtggatgttgcgttccatgaccgtaaccatattaca 21321472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 23602045 - 23601971
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| ||||||||||||||||| |  ||| |||||||||| |||||||||||||||||||||||    
T  23602045 ttttaaaaaggtcaggccagacttaaaataaagcctttgacaggtaaaaggtcaaggcttaggccttagtttttt 23601971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 49119795 - 49119627
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    |||||||||| |||||||| ||||||  ||||||| || | ||||| |  | |||| | |||||| || ||||||| | ||| ||||||| |||||| ||    
T  49119795 tagatgcatggcagcaatggcaagaggttcataaa-catccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaacccagtttggg 49119697  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    | |||||  | ||||||||| |||| ||||||||||||| ||| |||||||| |||||||||||||||||    
T  49119696 ataaaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc 49119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 55734820 - 55734956
Alignment:
Q  38 aaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatg 137  Q
    ||||||| |||| || || |||| ||| || |||| ||||||| ||||| ||||||||| |||| |||||||||| | ||||  |||||||| |||||||    
T  55734820 aaacaaccatcatcatcggttgtgcaatacagacaaaatagagtgcaaggtaacaactcggtttgggagaaaccgagcgagatgtggttgaagtgcaatg 55734919  T
Q  138 tggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    ||||||||||  |||||||||  |||||| |||||||    
T  55734920 tggatgtcgcgctccatgatctcaaccatattacatc 55734956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 37246178 - 37246092
Alignment:
Q  88 taacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||| ||||| |||||||||| | |||||||||||||| ||||||||||||| ||| |||||||| ||||| | |||||||||    
T  37246178 taacaacttagtttgggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgaccgtaatcgtcttacatc 37246092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 43138159 - 43138261
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    ||||||||||||||| |||||||||||||||||||  |||  | |||||||||||||||||||||| | ||||||  | |||||||||| || |||| ||    
T  43138159 ttttaaaaaggtcaggccagacttaaaataaagtctttgactgataaaaggccaaggcttaggcctcaattttttcaactaggccaaacctacttaaaca 43138258  T
Q  284 aag 286  Q
    |||    
T  43138259 aag 43138261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 1458413 - 1458339
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  ||| ||||||||||| ||  ||| ||||||||||||||| ||||||||||||||||||    
T  1458413 ttttaaaaaggtcaggtcaggcttaaaataaaatctttgacaggtaaaaggccaagacttaggccttagtttttt 1458339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 28425974 - 28426143
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactc-agtttag 103  Q
    |||||||||| |||||||| ||||||  ||||||| || | ||||| |  | |||| | |||||| || ||||||| | ||| ||||||| | ||||| |    
T  28425974 tagatgcatggcagcaatggcaagaggttcataaa-catccatcactattggttgtgccacacggccagaatagagtgtaaggtaacaaccccagtttgg 28426072  T
Q  104 gagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    || |||||  | ||||||||| |||| ||||||||||||| ||| |||||||| |||||||||||||||||    
T  28426073 gataaaccaagcgagacatggctgaagtgcaatgtggatgccgcgttccatgaccgtaaccatcttacatc 28426143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 34458171 - 34458097
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||| || ||| |||||||||||||||  |||  ||||||||||||||||||||| |||||||||||    
T  34458171 ttttaaaaaggttaggccaaacttaaaataaagtctttgactggtaaaaggccaaggcttaggtcttagtttttt 34458097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 51735297 - 51735211
Alignment:
Q  88 taacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    ||||| |||||||| || ||||||| | ||||| |||||||| ||||| ||||||| ||| ||||||||| ||||||||||||||||    
T  51735297 taacatctcagtttgggcgaaaccgagcgagacgtggttgaagtgcaacgtggatgccgcgttccatgattgtaaccatcttacatc 51735211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 47305115 - 47305218
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttac-attaggccaaacttatttaatc 282  Q
    |||||||||||||||   || ||||||||||||||  |||||||||||||| ||| |||||||| |||||||||| | | |||||| | | |||||||||    
T  47305115 ttttaaaaaggtcaggttaggcttaaaataaagtctttgataggtaaaaggtcaatgcttaggctttagtttttttcaactaggcctagcctatttaatc 47305214  T
Q  283 aaag 286  Q
    ||||    
T  47305215 aaag 47305218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 7290788 - 7290714
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  ||| ||||||||||||||  ||| || |||||| ||||||||||||| ||||||||||    
T  7290788 ttttaaaaaggtcaggtcaggcttaaaataaagtctttgacagataaaagaccaaggcttaggctttagtttttt 7290714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 47764665 - 47764738
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  |||||||||||||||| |  | | ||||||||||||||||| ||||||||||||||||    
T  47764665 ttttaaaaaggtcaggtcagacttaaaataaagcctttaaaaggtaaaaggccaaggc-taggccttagtttttt 47764738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 53995728 - 53995802
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  ||| |||||||||||| |  ||| | |||||||||| |||||||||||||||||||||    
T  53995728 ttttaaaaaggtcaggtcaggcttaaaataaagcctttgacaagtaaaaggcctaggcttaggccttagtttttt 53995802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 36445119 - 36445193
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||| |||||||||||||||||||  ||| | ||||||| | || ||||| |||||||||||||    
T  36445119 ttttaaaaaggccagaccagacttaaaataaagtctttgacatgtaaaagactaaagcttacgccttagtttttt 36445193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 31763937 - 31763991
Alignment:
Q  204 acttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  |||| | |||||||  ||||||||||||||||||||||    
T  31763937 acttaaaataaagtctttgatggataaaaggttaaggcttaggccttagtttttt 31763991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 22767665 - 22767497
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    |||||||||| |||||||| ||||||  ||||||| || | ||||| || | |||| | |||||| || ||||||| ||||| |||||||||||||| ||    
T  22767665 tagatgcatggcagcaatggcaagaggttcataaa-catccatcactactggttgtgccacacggccaaaatagagtgcaaggtaacaactcagtttggg 22767567  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||| | |||||||||||||| ||||||||||||| ||| ||||||||  |||| |||||||||||    
T  22767566 agaaaccgagcgagacatggttgaagtgcaatgtggatgccgcgttccatgacagtaatcatcttacatc 22767497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 8387862 - 8388015
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| ||||||||||| |||  ||||||| ||||  ||| || || |||| |||||||| || ||||||| ||||| |||||||||||| |    
T  8387862 cactagatgcatggcagcaatgacaggaggttcataaa-caaccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagtct 8387960  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatga 156  Q
     |||||||||||||||||| |||||||| | ||||||||||| ||| || |||||    
T  8387961 gggagaaaccgcgtgagacgtggttgaagtacaatgtggatgccgcgtttcatga 8388015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 41941148 - 41940977
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||| |||||||  |||| ||||||  ||||||| ||||  || |||||| |||| |||||||| || ||||||| ||||| || |||| || |||    
T  41941148 cactagatacatgacaataatggcaagaggttcataaa-caaccctcgccaccggttgtgcaacacgggcagaatagagtgcaaggtatcaacccaattt 41941050  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||| | ||||  |||||||| ||||||||||||| ||| |||||||| |||||| ||||||||||    
T  41941049 gggagaaaccgagcgagatgtggttgaagtgcaatgtggatgccgcgttccatgaccgtaactatcttacatc 41940977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 15989157 - 15988991
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    |||||||||| || ||||| ||||||  ||||||| ||||  |||| | || |||| |||||||  |||||||||| ||||| |||||||||||||| ||    
T  15989157 tagatgcatggcaacaatggcaagaggttcataaa-caaccttcactagcggttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttggg 15989059  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
    |||||||| | ||||| | |||||| || ||| |||||||||| |||||||| || |||||| |||||    
T  15989058 agaaaccgagcgagacgttgttgaagtgaaatatggatgtcgcgttccatgaccgcaaccatattaca 15988991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 30223210 - 30223039
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||||||||| ||||||||||||  |||| ||||| |  |||||| |  |||| |||||||| || ||||||| ||||| ||||||||| ||||    
T  30223210 cactagatgcatgacaacaatgacaagaggttcat-aaacagccctcaccaacagttgtgcaacacgggcagaatagagtgcaaggtaacaactctgttt 30223112  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||| | ||||| ||||  || |||||  |||| ||||| ||||||||  |||||||| |||||||    
T  30223111 gggagaaaccgtgcgagacgtggtcaaagtgcaacatggacgtcgcgttccatgactgtaaccatattacatc 30223039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 31335387 - 31335313
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| |||  ||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  31335387 ttttaaaaaggtcagaccaagcttaaaataaagtctttgacaggtaaaaggccaaagcttaggccttagtttttt 31335313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 16074591 - 16074679
Alignment:
Q  82 gcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatctta 170  Q
    |||| ||||||||| |||||||||||||||| | ||||| ||||  || ||||||||||||| ||| |||||||| |||||||||||||    
T  16074591 gcaatataacaacttagtttaggagaaaccgtgcgagacgtggtcaaagtgcaatgtggatgccgcgttccatgaacgtaaccatctta 16074679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 174
Target Start/End: Original strand, 20204802 - 20204902
Alignment:
Q  74 aatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacat 173  Q
    ||||||| | ||| ||| |||||||||| |||||||||   ||||||||||||||| ||||||||||||| ||| |||||||| | ||||||| ||||||    
T  20204802 aatagagtgtaaggtaataactcagtttgggagaaaccaaatgagacatggttgaagtgcaatgtggatgccgcgttccatgaccataaccatattacat 20204901  T
Q  174 c 174  Q
    |    
T  20204902 c 20204902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 27533318 - 27533147
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| || ||||||||||||  ||||||| || |  ||||||||| |||| |||||| |||| |||| || ||||| ||| |  | |||||    
T  27533318 cactagatgcatggcaacaatgacaagaggttcataaa-catccctcaccaccggttgtgcaacacagacagaatatagtgcaaggtaatagtttagttt 27533220  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     ||||||| |||| |||||  |  |||| || |||||||||||||| |||||||||||||||||  |||||||    
T  27533219 gggagaaatcgcgcgagacgcgactgaagtgtaatgtggatgtcgcgttccatgatcgtaaccagtttacatc 27533147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 10541567 - 10541493
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| ||||| ||||||||||| |  ||| | |||||||| |||||||||||||||||||||||    
T  10541567 ttttaaaaaggtcaggccagaattaaaataaagcctttgacaagtaaaaggtcaaggcttaggccttagtttttt 10541493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 34583478 - 34583552
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||| |||| |||||||||||| | | || || ||||||||||||||||||| |||||||||||    
T  34583478 ttttaaaaaggccaggccaggcttaaaataaagcctccgacagctaaaaggccaaggcttaggtcttagtttttt 34583552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 12660211 - 12660263
Alignment:
Q  122 tggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||| ||||||||||||| ||| |||||||| |||||||||||||||||    
T  12660211 tggttgaagtgcaatgtggatgccgcgttccatgaacgtaaccatcttacatc 12660263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 27292304 - 27292380
Alignment:
Q  97 agtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacat 173  Q
    ||||| ||||||||||   ||| |||||||||| ||||||||||||||| | ||||||||| |||||||| ||||||    
T  27292304 agtttgggagaaaccgaacgagtcatggttgaagtgcaatgtggatgtcacgttccatgatagtaaccatattacat 27292380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 12621362 - 12621288
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||  ||||||||||||||||| |  ||| |||||||||  |||||||||||||||| ||||||    
T  12621362 ttttaaaaaggccaaaccagacttaaaataaagcctttgacaggtaaaagatcaaggcttaggccttaatttttt 12621288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 34654003 - 34653859
Alignment:
Q  1 tcactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtt 100  Q
    |||||||||||||| || ||||| ||| ||| ||||||| ||||  ||| ||||  |||| |||||||  || ||||||| ||| |  ||||||| ||||    
T  34654003 tcactagatgcatggcaacaatggcaaaagattcataaa-caaccctcaacaccagttgtgcaacacgtgcagaatagagtgcaggc-aacaactaagtt 34653906  T
Q  101 taggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgc 147  Q
    | |||||||||||  ||||| |||||||| |||||||||||| ||||    
T  34653905 tgggagaaaccgcacgagacgtggttgaagtgcaatgtggatttcgc 34653859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 31303074 - 31303007
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggcctta 251  Q
    ||||||||||||||| ||| | ||||||||||| |  ||| || ||||||||||| ||||||||||||    
T  31303074 ttttaaaaaggtcagaccaaatttaaaataaagcctttgacagataaaaggccaatgcttaggcctta 31303007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 5926731 - 5926657
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||| |||||||| ||| ||||||||||||||   |||||| ||||| | ||||||||| | |||||||||||    
T  5926731 ttttaataaggtcaggccaaacttaaaataaagtatttgatagataaaaagtcaaggcttatgtcttagtttttt 5926657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Complemental strand, 26597783 - 26597713
Alignment:
Q  88 taacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatc 158  Q
    ||||||| |||||| ||||||| || || |||| |||||||| ||||||||||||| ||| || |||||||    
T  26597783 taacaacacagtttgggagaaatcgtgtaagacgtggttgaagtgcaatgtggatgccgcgtttcatgatc 26597713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Original strand, 40897512 - 40897578
Alignment:
Q  192 aggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||  |||||||||||||||| |  ||| ||| |||| |||||||||||||| ||||||||||    
T  40897512 aggtcagaacagacttaaaataaagcctttgacaggcaaaaagccaaggcttaggctttagtttttt 40897578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 25730688 - 25730753
Alignment:
Q  107 aaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
    |||||| | ||||| |||||||| ||||||||||||  ||| |||||||| ||||||||| |||||    
T  25730688 aaaccgagcgagacgtggttgaagtgcaatgtggattccgcgttccatgaccgtaaccatattaca 25730753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 88335 - 88504
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||||||||| ||||| |||||   ||||||| || |  |||| |||| ||||||||||||  |||||||||| |||||  |||||| ||||||    
T  88335 cactagatgcatgacaacaatggcaagatgttcataaa-catccctcactaccggttgtacaacacgagcataatagagtgcaaggcaacaacacagttt 88433  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
     |||||||||| | |||||||||||||| |||||||||||||  || |||||||| ||||||||| |||||    
T  88434 gggagaaaccgagcgagacatggttgaagtgcaatgtggatgctgcgttccatgaccgtaaccatattaca 88504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 166
Target Start/End: Complemental strand, 12131049 - 12130886
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacgg-acataatagagagcaagataacaactcagtt 100  Q
    ||||| ||||||| || ||||| ||||||  ||||||| |||| |||||||||| |||| |||||||| ||| || |||| ||||| |||||||||| ||    
T  12131049 cactatatgcatggcaacaatggcaagaggttcataaa-caaccatcaccaccggttgtgcaacacgggaca-aacagagtgcaaggtaacaactcaatt 12130952  T
Q  101 taggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccat 166  Q
    | ||||||| || | ||||| |||||||| ||||||||||||| | | |||||||| |||||||||    
T  12130951 tgggagaaatcgagcgagacgtggttgaagtgcaatgtggatgccccgttccatgaccgtaaccat 12130886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 30487742 - 30487668
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| |||| ||||||||||||||  ||| | ||||||||||||  ||||||||||||||||||    
T  30487742 ttttaaaaaggtcagaccaggcttaaaataaagtctttgacaagtaaaaggccaaaacttaggccttagtttttt 30487668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 40356093 - 40356167
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  ||  ||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||    
T  40356093 ttttaaaaaggtcaggtcatgcttaaaataaagtctttgagaggtaaaaggccaagacttaggccttagtttttt 40356167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 15440705 - 15440778
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttt 257  Q
    ||||||||||||||| || ||||||||||||||||  ||| |||| ||||||||||| |||||| |||||||||    
T  15440705 ttttaaaaaggtcaggccggacttaaaataaagtctttgacaggttaaaggccaaggtttaggcattagttttt 15440778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 34639853 - 34639786
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggcctta 251  Q
    ||||||||||||||| |||||||||||||||||||  ||| | |||||||  ||||||||||||||||    
T  34639853 ttttaaaaaggtcaggccagacttaaaataaagtctttgacaagtaaaagctcaaggcttaggcctta 34639786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 38855636 - 38855710
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||| |||  |||||||||||| |  |||  |||||||||||||||||||||||||||||||||    
T  38855636 ttttaaaaaggccaggccatgcttaaaataaagcctttgacgggtaaaaggccaaggcttaggccttagtttttt 38855710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 34696313 - 34696142
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| || ||||| ||||||  ||||| | |||| |||||||  ||  || || |||| ||||||||||  ||||| ||||||||||||||    
T  34696313 cactagatgcatggcaacaatggcaagaggttcataca-caaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagttt 34696215  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||| ||| ||| | |||||||| | ||| ||||||| | | |||||||| | ||| ||| |||||||    
T  34696214 gggagaaactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatc 34696142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 34718725 - 34718554
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| || ||||| ||||||  ||||| | |||| |||||||  ||  || || |||| ||||||||||  ||||| ||||||||||||||    
T  34718725 cactagatgcatggcaacaatggcaagaggttcataca-caaccatcaccattgccggtgcatcacgaacataatagaatgcaaggtaacaactcagttt 34718627  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||| ||| ||| | |||||||| | ||| ||||||| | | |||||||| | ||| ||| |||||||    
T  34718626 gggagaaactgcgcgagtcgtggttgaagtacaacgtggatgccacattccatgaccataagcatattacatc 34718554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 5305525 - 5305451
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| |||  ||| |||||||||||| |  |||  |||||||||||||| ||||||||||||||||||    
T  5305525 ttttaaaaaggccaggtcaggcttaaaataaagcctttgacgggtaaaaggccaagtcttaggccttagtttttt 5305451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 9329009 - 9328841
Alignment:
Q  5 tagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttagg 104  Q
    |||||||||| |||||||| |||||   ||||||| || | ||||| || | |||| | ||||||  | ||||||| ||||| |||||||||||||| ||    
T  9329009 tagatgcatggcagcaatggcaagatgttcataaa-catccatcactactggttgtgccacacggctagaatagagtgcaaggtaacaactcagtttggg 9328911  T
Q  105 agaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||| | |||||||||||||| || |||||||||| ||| |||||||| |||||||||||||||||    
T  9328910 agaaaccgagcgagacatggttgaagtgtaatgtggatgccgcgttccatgaccgtaaccatcttacatc 9328841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 16731709 - 16731880
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||| ||||| || ||||| ||||||  ||||||| ||||  ||||||||  |||| ||||||   |||||||||| ||||| ||||||||||||||    
T  16731709 cactagaagcatggcaacaatggcaagaggttcataaa-caacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagttt 16731807  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||| | |||||||||||||| ||||||||||||| ||  |||||||| || |||||| |||||||    
T  16731808 gggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatc 16731880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 17709843 - 17710014
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||| ||||| || ||||| ||||||  ||||||| ||||  ||||||||  |||| ||||||   |||||||||| ||||| ||||||||||||||    
T  17709843 cactagaagcatggcaacaatggcaagaggttcataaa-caacactcaccaccagttgtgcaacacatgcataatagagtgcaaggtaacaactcagttt 17709941  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||||| | |||||||||||||| ||||||||||||| ||  |||||||| || |||||| |||||||    
T  17709942 gggagaaaccgagcgagacatggttgaagtgcaatgtggatgccgtgttccatgaccgcaaccatattacatc 17710014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 22289017 - 22289188
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| ||||||||||| |||  ||||||| ||||  ||| || || |||| |||||||| || ||||||| ||||| ||||||||||||||    
T  22289017 cactagatgcatggcagcaatgacaggaggttcataaa-caaccctcatcatcggttgtgcaacacgggcagaatagagtgcaagctaacaactcagttt 22289115  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||| ||||||||||| ||||| || ||||||||||||| ||| || ||||| ||| | ||| |||||||    
T  22289116 gggagaagccgcgtgagacgtggtttaagtgcaatgtggatgccgcgtttcatgaccgtcaacatattacatc 22289188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 17877244 - 17877354
Alignment:
Q  63 aacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaa 162  Q
    ||||||| |||||| ||| ||||| |||||||||| ||| |||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||| ||||    
T  17877244 aacacgggcataatcgagtgcaaggtaacaactcaatttgggagaaaccgagcgagacgtggttgaaatgcaatgtggatgtcgcgttccatgattgtaa 17877343  T
Q  163 ccatcttacat 173  Q
    |||| ||||||    
T  17877344 ccatattacat 17877354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 29201360 - 29201209
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||||||||||||||||||||||  ||||||| || |  |||||| || |||| ||||||||||| |||| || ||||| ||| | ||||||||    
T  29201360 cactagatgcatgacagcaatgacaagaggttcataaa-cagccctcaccatcggttgtgcaacacggacaaaatacagtgcaaggtaatagctcagttt 29201262  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccat 154  Q
     |||||||||||  ||||| |||||||| |||||||| |||| ||| ||||||    
T  29201261 gggagaaaccgcacgagacgtggttgaagtgcaatgttgatgccgctttccat 29201209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 4920215 - 4920317
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    ||||||||||||||| |||||||||||||||||||  ||| || ||||| | ||||||||||||||||| ||||| || |||||| | ||||||||| ||    
T  4920215 ttttaaaaaggtcaggccagacttaaaataaagtctttgacagataaaatgtcaaggcttaggccttaggtttttccactaggcctagcttatttaagca 4920314  T
Q  284 aag 286  Q
    |||    
T  4920315 aag 4920317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 3526114 - 3526186
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttt 256  Q
    |||||||||| ||||  || |||||||||||||||  |||||||||||||| |||||||||||||||||||||    
T  3526114 ttttaaaaagatcaggtcaaacttaaaataaagtctttgataggtaaaaggtcaaggcttaggccttagtttt 3526186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 1581391 - 1581562
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||| || || ||||| ||||||  ||||||| || |  |||||| || |||||||||||| ||| | || || ||||  ||||||||||||||    
T  1581391 cactagatgcttggcaacaatggcaagaggttcataaa-catccctcaccatcggttgtacaacacgaacaaagtatagtgcaacgtaacaactcagttt 1581489  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
     |||||||| | | ||||  |||||||| |||||||||||||  || |||||||| | ||||||| |||||||    
T  1581490 gggagaaactgagcgagatgtggttgaagtgcaatgtggatgctgcgttccatgaccataaccatattacatc 1581562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 26425228 - 26425154
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  || |||||||||||||    ||| |||||||||||||||||||| |||||||||||||    
T  26425228 ttttaaaaaggtcaggtcaaacttaaaataaagcttttgacaggtaaaaggccaaggcttaagccttagtttttt 26425154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 9458739 - 9458665
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| |||  ||||||||||   |  ||| |||||||||| |||||||||||||||||||||||    
T  9458739 ttttaaaaaggtcaggccaagcttaaaataagacctttgacaggtaaaaggtcaaggcttaggccttagtttttt 9458665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 30493966 - 30493850
Alignment:
Q  57 ttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatga 156  Q
    |||| ||||| || ||||||| || ||||||||||||| |||||| | ||||| ||   || || ||||| || |||||| |||||||||| ||||||||    
T  30493966 ttgtgcaacatgggcataataaagtgcaagataacaacacagtttggaagaaatcgaacgaaacgtggttaaagtgcaatatggatgtcgcattccatga 30493867  T
Q  157 tcgtaaccatcttacat 173  Q
      ||||||| |||||||    
T  30493866 ctgtaaccaacttacat 30493850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 5734386 - 5734460
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||| | | || |||||||||||| |  ||| |||||||||| |||| ||||||||||| ||||||    
T  5734386 ttttaaaaaggtctggcaaggcttaaaataaagcctttgacaggtaaaaggtcaagacttaggccttaatttttt 5734460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 14679970 - 14680106
Alignment:
Q  38 aaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatg 137  Q
    |||||||| |||||||   |||| |||||||  |||||||||| ||||| |||||||||||||| |||||||||| | |||||||||||||| |||||||    
T  14679970 aaacaactctcaccactagttgtgcaacacgagcataatagagtgcaaggtaacaactcagtttgggagaaaccgagcgagacatggttgaagtgcaatg 14680069  T
Q  138 tggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||  ||| |||||||| || |||||  |||||||    
T  14680070 tggataccgcgttccatgaccgcaaccacattacatc 14680106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 15606320 - 15606234
Alignment:
Q  88 taacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||||||||| |||||||||||  |||||||||||||| ||||||||||||| ||| || || |||||||||||| |||||||    
T  15606320 taacaactcagtttgggagaaaccgcacgagacatggttgaagtgcaatgtggatgccgcatttcacgatcgtaaccatattacatc 15606234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 22293437 - 22293511
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| ||| ||||||||||||||   ||| |||||||||||||||||||||||||||| |||||    
T  22293437 ttttaaaaaggtcaggccaaacttaaaataaagtatttgacaggtaaaaggccaaggcttaggccttagattttt 22293511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 4127352 - 4127278
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||| |||| |||||||||||| |  ||| |||||||||||||||||||||||||||| |||||    
T  4127352 ttttaaaaaggccagaccaggcttaaaataaagcctttgacaggtaaaaggccaaggcttaggccttaggttttt 4127278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 174
Target Start/End: Original strand, 28106916 - 28107086
Alignment:
Q  3 actagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttta 102  Q
    |||||||||||| || ||||| ||||||  ||||||| || || ||||||  | |||| ||||||   || ||||||| ||||| ||||| ||||||||     
T  28106916 actagatgcatggcaacaatggcaagaggttcataaa-catctttcaccattggttgtgcaacacatgcaaaatagagtgcaaggtaacatctcagtttg 28107014  T
Q  103 ggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    |||||||||    ||||| |||||||| ||||| | ||| | | | ||||||||||||||||||||||||||    
T  28107015 ggagaaaccaaacgagacgtggttgaagtgcaacgaggaagccacgttccatgatcgtaaccatcttacatc 28107086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 16166725 - 16166821
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaa 280  Q
    ||||||||||| |||  ||| |||||||||||| |   || |||||||||||||||| |||||||||||||||||  | |||||| | |||||||||    
T  16166725 ttttaaaaaggccaggtcaggcttaaaataaagccttggacaggtaaaaggccaaggtttaggccttagttttttcaactaggcctagcttatttaa 16166821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 16464132 - 16464206
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||| || ||| |||||| ||||||||  || | | |||||| ||||||||||||||||||||||||    
T  16464132 ttttaaaaaggttaggccaaacttaatataaagtctttgctggataaaagaccaaggcttaggccttagtttttt 16464206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 6139152 - 6139184
Alignment:
Q  226 ggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||||||||||||||||||||    
T  6139152 ggtaaaaggccaaggcttaggccttagtttttt 6139184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 19364356 - 19364249
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    |||||||||||||||| ||||| | ||||  ||||||| ||||  |||||| ||| ||| |||||||  || ||| ||| ||||| ||||||||||||||    
T  19364356 cactagatgcatgacaacaatggcgagaggttcataaa-caaccctcaccaacgcatgtgcaacacgagcaaaatcgagtgcaaggtaacaactcagttt 19364258  T
Q  102 aggagaaac 110  Q
     ||||||||    
T  19364257 gggagaaac 19364249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Original strand, 22300433 - 22300535
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    ||||||||||| ||   ||| |||||||||||| |  ||| |||||||| ||||||| ||||||||||| |||||  | ||||||| || ||||||| ||    
T  22300433 ttttaaaaaggccatgtcaggcttaaaataaagcctttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagca 22300532  T
Q  284 aag 286  Q
    |||    
T  22300533 aag 22300535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 11731981 - 11731889
Alignment:
Q  82 gcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    ||||| ||||||||||| || |||||||| | | ||||| |||| ||| |||||||| |||| ||| ||||||||  ||||| || |||||||    
T  11731981 gcaaggtaacaactcagcttgggagaaactgagcgagacgtggtggaagtgcaatgtagatgacgcattccatgactgtaacaatattacatc 11731889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 172
Target Start/End: Original strand, 5609172 - 5609284
Alignment:
Q  60 tacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcg 159  Q
    |||||||| | |||||||||| |||||  ||||||||||||| |||||||||| | ||||| |||||||| ||||||||||||||||| ||||||||  |    
T  5609172 tacaacacaggcataatagagtgcaaggcaacaactcagtttgggagaaaccgagcgagacgtggttgaagtgcaatgtggatgtcgcgttccatgactg 5609271  T
Q  160 taaccatcttaca 172  Q
    ||||||| |||||    
T  5609272 taaccatattaca 5609284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 25682429 - 25682598
Alignment:
Q  4 ctagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagtttag 103  Q
    ||||||||||| |||||||| ||||||| ||||||| ||||  | | | ||| |||| ||||| ||  | ||||||| |||||  || |||||| ||| |    
T  25682429 ctagatgcatggcagcaatggcaagagattcataaa-caacccttatcgccgattgtgcaacatgggtagaatagagtgcaaggcaagaactcaatttgg 25682527  T
Q  104 gagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccatcttacatc 174  Q
    ||||||||| |||||||||||||||| ||||||||||||| ||  || ||||| |||||||||||||||||    
T  25682528 gagaaaccgtgtgagacatggttgaagtgcaatgtggatgccgtgtttcatgaacgtaaccatcttacatc 25682598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 48950081 - 48949964
Alignment:
Q  57 ttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatga 156  Q
    |||| |||||||| || ||||||| ||||| ||||||||||| || |||||||||||||||||| |||||||| ||||||||||||| ||| || |||||    
T  48950081 ttgtgcaacacgggcagaatagagtgcaagctaacaactcagattgggagaaaccgcgtgagacgtggttgaagtgcaatgtggatgccgcgtttcatga 48949982  T
Q  157 tcgtaaccatcttacatc 174  Q
     ||| | ||| |||||||    
T  48949981 ccgtcaacatattacatc 48949964  T

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Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 13260463 - 13260537
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| |||||||||||||||||||  ||| ||||||||||||||| |||||| |||||||||||    
T  13260463 ttttaaaaaggtcaggccagacttaaaataaagtctttgacaggtaaaaggccaagacttaggtcttagtttttt 13260537  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 40708298 - 40708372
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||||||| |||| |||||||||||| |  ||| ||||||||||||||||||||||| ||||||||||    
T  40708298 ttttaaaaaggtcaggccaggcttaaaataaagcctttgacaggtaaaaggccaaggcttaggctttagtttttt 40708372  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 51113091 - 51113231
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| |||||||| || |||  ||||||| || |  ||| || || |||| |||||||| || ||||||| ||||| ||||||||||||||    
T  51113091 cactagatgcatggcagcaatggcaggaggttcataaa-cagccctcatcatcgattgtgcaacacgggcagaatagagtgcaagctaacaactcagttt 51113189  T
Q  102 aggagaaaccgcgtgagacatggttgaactgcaatgtggatg 143  Q
     ||||||| || ||||||| ||||| || |||||||||||||    
T  51113190 gggagaaatcgtgtgagacgtggttaaagtgcaatgtggatg 51113231  T

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Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 4395003 - 4395098
Alignment:
Q  71 cataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaaccat 166  Q
    ||||| |||| |||||| ||||||||||||| |||||||||| | ||||| ||| |||| ||||||||||| | ||| |||||||| |||||||||    
T  4395003 cataacagagtgcaagacaacaactcagtttgggagaaaccgagcgagacgtggctgaagtgcaatgtggaagccgcgttccatgaccgtaaccat 4395098  T

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Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 35361940 - 35361866
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    ||||||||||| ||| ||| |||||||||||||||  ||| | |||||||| |||||||||||||||||||||||    
T  35361940 ttttaaaaaggccagaccatacttaaaataaagtctttgacatgtaaaaggtcaaggcttaggccttagtttttt 35361866  T

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Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 36733469 - 36733641
Alignment:
Q  2 cactagatgcatgacagcaatgacaagagaatcataaaacaactatcaccaccgcttgtacaacacggacataatagagagcaagataacaactcagttt 101  Q
    ||||||||||||| |||||||| ||||||  |||||||    |  |||| |||| |||| ||||| || || ||||||  ||||| ||| |||| |||||    
T  36733469 cactagatgcatggcagcaatggcaagaggttcataaacatcccctcactaccggttgtgcaacaaggccaaaatagaatgcaaggtaataactgagttt 36733568  T
Q  102 aggagaaaccgcgtgagacatggttgaactgca--atgtggatgtcgccttccatgatcgtaaccatcttaca 172  Q
     |||||||||| | |||||||||||||| ||||  ||||||||| ||| || |||||   |||||||||||||    
T  36733569 cggagaaaccgagcgagacatggttgaagtgcaatatgtggatgccgcgtttcatgactataaccatcttaca 36733641  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 12569723 - 12569797
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagtttttt 258  Q
    |||||||||||||||  |||||||||||||||| |  | | | |||||||| |||||||||| ||||||||||||    
T  12569723 ttttaaaaaggtcaggtcagacttaaaataaagcctttaacaagtaaaaggtcaaggcttagaccttagtttttt 12569797  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 24538357 - 24538448
Alignment:
Q  74 aatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcgccttccatgatcgtaacca 165  Q
    ||||||| ||||| ||||| ||||||||  ||||||||  ||||||| |||| ||| ||||||||||||| ||| ||| || | ||||||||    
T  24538357 aatagagtgcaaggtaacatctcagtttgagagaaaccaagtgagacctggtcgaaatgcaatgtggatgccgcgttctataaccgtaacca 24538448  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 286
Target Start/End: Complemental strand, 13640843 - 13640741
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaatca 283  Q
    ||||||||||| ||   ||| |||||||||||| |  ||| |||||||| ||||||| ||||||||||| |||||  | ||||||| || ||||||| ||    
T  13640843 ttttaaaaaggccatgtcaggcttaaaataaagcctttgacaggtaaaaagccaaggtttaggccttagatttttcaactaggccagacatatttaagca 13640744  T
Q  284 aag 286  Q
    |||    
T  13640743 aag 13640741  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 280
Target Start/End: Complemental strand, 3289146 - 3289050
Alignment:
Q  184 ttttaaaaaggtcagtccagacttaaaataaagtcactgataggtaaaaggccaaggcttaggccttagttttttacattaggccaaacttatttaa 280  Q
    |||||||||||  ||  ||| ||||||||||||||  ||| |  ||||||| |||||||||| ||||||||||||  | |||||| ||| |||||||    
T  3289146 ttttaaaaaggctaggtcaggcttaaaataaagtctttgacaaataaaaggtcaaggcttagaccttagttttttcaactaggcctaacctatttaa 3289050  T

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Target: scaffold0446 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 146
Target Start/End: Original strand, 16 - 105
Alignment:
Q  57 ttgtacaacacggacataatagagagcaagataacaactcagtttaggagaaaccgcgtgagacatggttgaactgcaatgtggatgtcg 146  Q
    |||| |||||||| || || |||  ||||| |||||||||||||| |||||||| | ||||||| |||||||| ||||||||||||||||    
T  16 ttgtgcaacacgggcagaacagactgcaagctaacaactcagtttgggagaaactgtgtgagacgtggttgaagtgcaatgtggatgtcg 105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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