View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_242 (Length: 286)
Name: NF11737A_low_242
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_242 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 499445 - 499713
Alignment:
| Q |
3 |
ctaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatg |
102 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499445 |
ctaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatg |
499544 |
T |
|
| Q |
103 |
acaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499545 |
acaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctat |
499644 |
T |
|
| Q |
203 |
gcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattcccccat |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
499645 |
gcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccattcccccat |
499713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 6924193 - 6924461
Alignment:
| Q |
3 |
ctaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatg |
102 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924193 |
ctaacaaaagagtttcagattcgttccgcaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatg |
6924292 |
T |
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| Q |
103 |
acaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctat |
202 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924293 |
acaatgacgctattcttgaagtggacttaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctat |
6924392 |
T |
|
| Q |
203 |
gcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattcccccat |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6924393 |
gcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatgcacagccccattcccccat |
6924461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 27529108 - 27529201
Alignment:
| Q |
8 |
aaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaat |
101 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||||| |||||| | ||||||| ||| ||||| |||| |
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| T |
27529108 |
aaaagaggctcagattcgttccccaattaccaaacgtatagtaatttttaatgggaatacaagttcactaaatttgaatcttgatcctaaaaat |
27529201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 3 - 270
Target Start/End: Original strand, 30831617 - 30831884
Alignment:
| Q |
3 |
ctaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatg |
102 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
30831617 |
ctaacaaaagagactcagattcgttccccagaagccgaacgtatggtaatatttaataggaatacagattcactgactttgaatcttggtcctagaaatg |
30831716 |
T |
|
| Q |
103 |
acaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctat |
202 |
Q |
| |
|
||||||| |||||||||||| ||||||| |||||||||||||||||| ||||||||||||| ||| |||||| ||| ||||||||||||||||||||||| |
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| T |
30831717 |
acaatgatgctattcctgaactggacctgaatcacgaattttttctactaaattttttacgtgaatcagattatgaccgagatataattaagggatctat |
30831816 |
T |
|
| Q |
203 |
gcgccctctaaggcgtaaaatagcgacaacgaaactttctcaaggaaatggacagccccattccccca |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |
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| T |
30831817 |
gcgccctctaaggcgtaaaatagcgacaacgaaacttgttcaaggaactggacaggcccattccccca |
30831884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 47460500 - 47460370
Alignment:
| Q |
59 |
tgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
158 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460500 |
tgggaatacagagtcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaatcacgaattttttctagtaaatttt |
47460401 |
T |
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| Q |
159 |
ttacgcgaaccagattttgatcgagatataa |
189 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
47460400 |
ttacgcgaaccagattttgatcgagatataa |
47460370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 28384209 - 28384101
Alignment:
| Q |
35 |
agccgaacgtatggtaatttttaatgggaatacagattcactgactttgaatattggtcctagaaatgacaatgacgctattcctgaagtggacctaaat |
134 |
Q |
| |
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|||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
28384209 |
agccgaacgtatagtaatttttaataggaatacagattcactaactttgaatcttggtcctag-aatgacaatgacgctattcctgaactggacctaaat |
28384111 |
T |
|
| Q |
135 |
cacgaatttt |
144 |
Q |
| |
|
|||||||||| |
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| T |
28384110 |
cacgaatttt |
28384101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 239
Target Start/End: Complemental strand, 11299504 - 11299457
Alignment:
| Q |
192 |
aagggatctatgcgccctctaaggcgtaaaatagcgacaacgaaactt |
239 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| |||||||| |
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|
| T |
11299504 |
aagggatctatgcaccctctaaggcgtaaaataacgacttcgaaactt |
11299457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 2912956 - 2912825
Alignment:
| Q |
140 |
attttttctagtaaattttttacgcgaaccagattttgatcgagatataattaagggatctatgcgccctctaaggcgt-aaaatagcgacaacgaaact |
238 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||| |||||| |||| |||||| |
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|
| T |
2912956 |
attttttcaattaaattttttacgcgaaccagattatgaccgagatataattaagggatctatgcaccctctaagtcgtaaaaataacgactttgaaact |
2912857 |
T |
|
| Q |
239 |
ttctcaaggaaatggacagccccattccccca |
270 |
Q |
| |
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| |||||||| |||||| |||||||||||| |
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| T |
2912856 |
tgttcaaggaactggacattcccattccccca |
2912825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Complemental strand, 47448256 - 47448189
Alignment:
| Q |
3 |
ctaacaaaagagtttcagattcgttccccaaaagccgaacgtatggtaatttttaatgggaatacagattcactgac |
79 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
47448256 |
ctaacaaaagaggctcagattcgttccccaaaagccaaacg---------ttttaatgggaatacagattcactgac |
47448189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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