View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_246 (Length: 284)
Name: NF11737A_low_246
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_246 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 6179727 - 6179468
Alignment:
| Q |
3 |
cgaaaatgaagaaatagagatagatgcaagaaacattttgagagtgtgggtttttgtgtggatgagcgaaagaggttgatgctagaaacaacaagagatt |
102 |
Q |
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| T |
6179727 |
cgaaaatgaaaaaatagagatagatgcaagaaacattttgagagtgtgg------------atgagagaaagagtttgatgctagaaacaacgagagatt |
6179640 |
T |
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| Q |
103 |
tgtggctctaattttgtaagagtgagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataatgtgttcgtatatataagt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6179639 |
tgtggctctaattttgtaagagtgagaaagaaagtgtgagtgagaaaatcaacactcacaaaataaagcttagtagtataatgtgttcgtatatataagt |
6179540 |
T |
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| Q |
203 |
ggcaagaaaatgagattgagatagaggttctaggnnnnnnnnggtagtatattttagggttatcaatattgt |
274 |
Q |
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| T |
6179539 |
ggcaagaaaatgagattgagatagaggttctaggtttattttggtagtagattttagggttacaaatattgt |
6179468 |
T |
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