View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_248 (Length: 283)
Name: NF11737A_low_248
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_248 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 38447067 - 38447296
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38447067 |
tgtggaaaaacatggaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
38447166 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38447167 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctc |
38447266 |
T |
|
| Q |
201 |
gcgaggtatttttgttcatgttttactttc |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38447267 |
gcgaggtatttttgttcatgttttactttc |
38447296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38180601 - 38180792
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| ||||||||||||| || |||| ||| || | ||| | |||||| ||| | |||||||||||| ||||| |
|
|
| T |
38180601 |
tgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccta |
38180700 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
|
|
| T |
38180701 |
caaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38180792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38190530 - 38190339
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| ||||||||||||| || |||| ||| || | ||| | |||||| ||| | |||||||||||| ||||| |
|
|
| T |
38190530 |
tgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccta |
38190431 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
|
|
| T |
38190430 |
caaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38190339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38207825 - 38208016
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| ||||||||||||| || |||| ||| || | ||| | |||||| ||| | |||||||||||| ||||| |
|
|
| T |
38207825 |
tgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccta |
38207924 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
|
|
| T |
38207925 |
caaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38208016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 38217755 - 38217564
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| ||||||||||||| || |||| ||| || | ||| | |||||| ||| | |||||||||||| ||||| |
|
|
| T |
38217755 |
tgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccta |
38217656 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
|
|
| T |
38217655 |
caaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38217564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 38455961 - 38456152
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| ||||||||||||| || |||| ||| || | ||| | |||||| ||| | |||||||||||| ||||| |
|
|
| T |
38455961 |
tgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcaccta |
38456060 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||| || |||||| ||| |||| || |||||||||| ||||||||||||||| |
|
|
| T |
38456061 |
caaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa |
38456152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 26033655 - 26033464
Alignment:
| Q |
1 |
tgtggagaagcatagaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataaccta |
100 |
Q |
| |
|
|||||| || ||| |||||||||||||| |||||||||| || || | || ||| || | ||| | |||||| ||| | |||||||||||| |||| |
|
|
| T |
26033655 |
tgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgccgggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctg |
26033556 |
T |
|
| Q |
101 |
agacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa |
192 |
Q |
| |
|
||| | ||| |||||||||||||||||| |||||||||||| ||||| ||| ||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
26033555 |
caaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaagtatggtgaattcaaatggtctaa |
26033464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 38342378 - 38342593
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| |
|
|
| T |
38342378 |
gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag |
38342477 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
|
|
| T |
38342478 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38342577 |
T |
|
| Q |
213 |
tgttcatgttttactt |
228 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38342578 |
tgttcatgctttactt |
38342593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 38446571 - 38446786
Alignment:
| Q |
15 |
gaaccagaaattgggacgaggtatcaaagaacacgggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa |
114 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||| | ||| |
|
|
| T |
38446571 |
gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag |
38446670 |
T |
|
| Q |
115 |
aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt |
212 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| ||||| ||||| | |||| ||||| |||||||||||||| || |||| ||||| |||||| |
|
|
| T |
38446671 |
aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt |
38446770 |
T |
|
| Q |
213 |
tgttcatgttttactt |
228 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
38446771 |
tgttcatgctttactt |
38446786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University