View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_253 (Length: 280)
Name: NF11737A_low_253
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_253 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 2019705 - 2019960
Alignment:
| Q |
21 |
ctttaaagttaccaaagatgcttatttaaatattggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaaca |
120 |
Q |
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| T |
2019705 |
ctttaaagttaccaaagatgcttatttaaatattagggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaaca |
2019804 |
T |
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| Q |
121 |
tgttagcatagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatca |
220 |
Q |
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| T |
2019805 |
tgttagcatagggaatttgttaatgaactaaattttgaaa----atattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatca |
2019900 |
T |
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| Q |
221 |
caaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatcca |
280 |
Q |
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| T |
2019901 |
caaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatcca |
2019960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 113 - 280
Target Start/End: Original strand, 2036519 - 2036685
Alignment:
| Q |
113 |
tggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtctt |
212 |
Q |
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| T |
2036519 |
tggtaatatgttagcatagggaatttgttaatgaactaaattttgaaacattatatgtgaaattgtatatttaatttcttgaaagtttacaaattgtctt |
2036618 |
T |
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| Q |
213 |
ttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatcca |
280 |
Q |
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| T |
2036619 |
ttttaacacaaacttttaatttgtattctttaacaagtg-ccctaagagagcatgttagcaaaatcca |
2036685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 1994504 - 1994599
Alignment:
| Q |
129 |
tagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaa |
224 |
Q |
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| T |
1994504 |
tagggaatgtgttaatgaactaaatattgaaacattatattggaaatggtgtatttcatttcttgaaattttttaaattatctttttcatcacaaa |
1994599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 2036397 - 2036447
Alignment:
| Q |
21 |
ctttaaagttaccaaagatgcttatttaaatattggggcatttgcaaagta |
71 |
Q |
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| T |
2036397 |
ctttaaagttaccaaagatgcttatttaaatattagggcatttgcaaagta |
2036447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 1990745 - 1990805
Alignment:
| Q |
53 |
ttggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaactt |
113 |
Q |
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| T |
1990745 |
ttggggcatttgcaaagaactagcagaaactgagtgtagccttattttgttacttaaactt |
1990805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 35315675 - 35315715
Alignment:
| Q |
234 |
tttattctttaacaagtgcccctaagtgcgcatgttagcaa |
274 |
Q |
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| T |
35315675 |
tttattccttaacaagtgcccctaagggcacatgttagcaa |
35315715 |
T |
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