View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_254 (Length: 280)
Name: NF11737A_low_254
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_254 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 10680037 - 10680312
Alignment:
| Q |
5 |
agtttggtgttggatggaatagaatttttgtcaattgnnnnnnnngtagaggcctaatgagtatggtgaggaatcatactatatataaattgcttaatac |
104 |
Q |
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|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10680037 |
agtttgctgttggatggaatagaatttttgtcaattgaaaaaaaagtagaggcctaatgagtatggtgaggaatcatactatatataaattgcttaatac |
10680136 |
T |
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| Q |
105 |
taaacatgattactaaacatgtacatgatgcaagacacgacattcattattcaatgcaagactcaagctacagctgctctgtcgatgcacggggacacat |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||| |
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| T |
10680137 |
taaacatgattactaaacatgtacatgatgcaagacacgacattcattattcaatgcaagactcgagctacagctactctgtcgatgcacgaggatacat |
10680236 |
T |
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| Q |
205 |
ttaactttggacacagatgagagtgtcgtcaacatcgatagaggcaagtaacatctactcggagtgataagtgaga |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
10680237 |
ttaactttggacacagatgagagtgtcgtcaacatcgatagagataagtaacatctactcggagtgataagtgaga |
10680312 |
T |
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