View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_261 (Length: 274)
Name: NF11737A_low_261
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_261 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 23 - 264
Target Start/End: Complemental strand, 1831845 - 1831604
Alignment:
| Q |
23 |
agggtcaactagctccttatcttcattctttacacacctaaggt-cacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
121 |
Q |
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| T |
1831845 |
agggtcaactagctcttcatcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctctttaaa |
1831746 |
T |
|
| Q |
122 |
atatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatct |
221 |
Q |
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| T |
1831745 |
atatttgtagcatatttcttctggtgcatcactaaacattctgaagttttagtgaattccattccagggaaatatgttaactttcccaaatcagtcatct |
1831646 |
T |
|
| Q |
222 |
caaattctctcatcatttgtcttttgaaatttttctatctatg |
264 |
Q |
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| T |
1831645 |
caaattctgtcatcatttgtcttttg-aatttttctgtctatg |
1831604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 15490418 - 15490592
Alignment:
| Q |
77 |
ggtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatattt--cttctggtgcaccactaaacattatgaagttttagt |
174 |
Q |
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| T |
15490418 |
ggtgtatatgtaggattgcaactcatcatgttgaatctcttaagaatatcaataacatgtttatcttctgatgcatccctaaaccttttaaagtttaatt |
15490517 |
T |
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| Q |
175 |
gaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
249 |
Q |
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| T |
15490518 |
gaattccatttcaaggaagtatattaactttcccaaatcagccatatcaaattctctcatcatttgtcttatgaa |
15490592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 16944109 - 16944223
Alignment:
| Q |
135 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
234 |
Q |
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| T |
16944109 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
16944208 |
T |
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| Q |
235 |
catttgtcttttgaa |
249 |
Q |
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| T |
16944209 |
catttgtcttttgaa |
16944223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 17014774 - 17014888
Alignment:
| Q |
135 |
atttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttcccaaatcttccatctcaaattctctcat |
234 |
Q |
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| T |
17014774 |
atttcttctggtgcatcactaatccctttgaggtttcagtgaattctattccaaggaagtatggtaactttcccaaataagtcatgtccaattctttcat |
17014873 |
T |
|
| Q |
235 |
catttgtcttttgaa |
249 |
Q |
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| T |
17014874 |
catttgtcttttgaa |
17014888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 9817073 - 9816931
Alignment:
| Q |
107 |
ttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaattccatcccaaggaaatattttaactttc |
206 |
Q |
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||||||||||| ||||||| | | ||||||||||||| ||||| |||||| | | ||| |||||||||||||| || |||| ||||||| ||||| ||| |
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| T |
9817073 |
ttgaatctcttcaaaatatctattgcatatttcttctagtgcatcactaatccctttgaggttttagtgaattctattccaaagaaatatgttaaccttc |
9816974 |
T |
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| Q |
207 |
ccaaatcttccatctcaaattctctcatcatttgtcttttgaa |
249 |
Q |
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| T |
9816973 |
ccaaaccagtcatgtcaaactctttcatcatttgtcttttgaa |
9816931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 207
Target Start/End: Complemental strand, 30065339 - 30065210
Alignment:
| Q |
78 |
gtgtagatgcaggattgaagcccatcatgttgaatctctttaaaatatttgtagcatatttcttctggtgcaccactaaacattatgaagttttagtgaa |
177 |
Q |
| |
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||||||||||||||||| || || ||||||||| ||||| | ||||| | |||||| |||||||| ||| |||| || || |||||||||||||| |
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| T |
30065339 |
gtgtagatgcaggattgcagttcaacatgttgaacctcttgagaatatcagaagcatacttcttctgatgcttaactagaccttcagaagttttagtgaa |
30065240 |
T |
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| Q |
178 |
ttccatcccaaggaaatattttaactttcc |
207 |
Q |
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|||||| |||||||| ||| |||||||||| |
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| T |
30065239 |
ttccataccaaggaagtatgttaactttcc |
30065210 |
T |
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