View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_263 (Length: 273)
Name: NF11737A_low_263
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_263 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 12200727 - 12200981
Alignment:
| Q |
16 |
gacatcagatattatcgatccggatgactgtgatacgtgcttattcaacatcattttcaaagtaggatccagtgggatccaccaaaatttccagctagat |
115 |
Q |
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| T |
12200727 |
gacatcagttattatagatccggatgactatgatatgtgcttattcaacatcattttcaaagtagaatccagtgggatccaccaaaatttccagctagat |
12200826 |
T |
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| Q |
116 |
ccagtgctacacacaacagttcacacactttcacaaaccatacacactccatcttagtgtctacataaaccccaccacccaacctcaatattcaacacca |
215 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
12200827 |
ccagtgctacaca-aacagttcacactctttcacaaaccatatacactccatcttagtgtctacataaacccccacacacaacctcaatattcaacacca |
12200925 |
T |
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| Q |
216 |
ttaaaccacatcactcacaaaaatctcatcactcaattttcctttttctcatttct |
271 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12200926 |
ttaaaccacaacactcacaaaaatctcatcactcaattttcctttttctcatttct |
12200981 |
T |
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