View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_264 (Length: 273)
Name: NF11737A_low_264
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_264 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 26664812 - 26664540
Alignment:
| Q |
1 |
tgttataacactgcattatagcggaatttaaataaaccactattttctgtgatccgctaccacagttgccaatatttatctactttcatgaacttataga |
100 |
Q |
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| T |
26664812 |
tgttataacactgcattatagcggaatttaaataaaccactattttctgtgatccgctaccacagttgtcaatatttatctactttcatgaacttataga |
26664713 |
T |
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| Q |
101 |
tatactattattatctatgttttacagatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaag |
200 |
Q |
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| T |
26664712 |
tatactattattatttatgttttacagatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaag |
26664613 |
T |
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| Q |
201 |
gagtttggtgctgatacaattatggaggtaaattatgtaacaagattgaactatgcgatgattaagtaattga |
273 |
Q |
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| T |
26664612 |
gagtttggtgctgatacaattatggaggtaaattatgtaacaagattgaactatgtgatgattaagtacttga |
26664540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 26671740 - 26671617
Alignment:
| Q |
126 |
agatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatgg |
225 |
Q |
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| T |
26671740 |
agatttcttaaagcaaggaagtttgatattgaaaaagcaaagaatatgtgggctgatatgctacaatggaggaaggaatttggtgctgatacaattatgg |
26671641 |
T |
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| Q |
226 |
aggtaaattatgtaacaagattga |
249 |
Q |
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| T |
26671640 |
aggtaaattatgtaacaagattga |
26671617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 26643786 - 26643671
Alignment:
| Q |
147 |
tttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggtaaattatgtaacaagat |
246 |
Q |
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| T |
26643786 |
tttgatattgaaaaagcaaagcagatgtgggctgatatgctacaatggaggaaggagtttggtattgatacaattatgaaggtaaattatgtaacgagat |
26643687 |
T |
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| Q |
247 |
tgaactatgcgatgat |
262 |
Q |
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| T |
26643686 |
tgacctttgcgatgat |
26643671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 26638613 - 26638706
Alignment:
| Q |
137 |
agcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggta |
230 |
Q |
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| T |
26638613 |
agcaaggaagtttgacattgaaaaaacaaagcaaatgtgggcagatatgctccaatggaggagggaatttggtgctgacactatcatggaggta |
26638706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 54781535 - 54781429
Alignment:
| Q |
126 |
agatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatgg |
225 |
Q |
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| T |
54781535 |
agatttctgaaagcaaggaaatttgatattgaaaaagcaaagcatatgtgggctgacatgctacaatggagaagggagtttggtgctgacaccattatgc |
54781436 |
T |
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| Q |
226 |
aggtaaa |
232 |
Q |
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| T |
54781435 |
aggtaaa |
54781429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 52489740 - 52489644
Alignment:
| Q |
133 |
tgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggt |
229 |
Q |
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||||||||||||| |||||||||| || ||||||| ||||||||| | ||| | |||||||||| || | |||| | ||||||||||| ||||| |
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| T |
52489740 |
tgaaagcaaggaagtttgatattgagaaagcaaagcttatgtgggccaacatgatccaatggaggaaagactatggtacagatacaattatagaggt |
52489644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 229
Target Start/End: Complemental strand, 7210221 - 7210125
Alignment:
| Q |
133 |
tgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggt |
229 |
Q |
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| T |
7210221 |
tgaaagcgaggaaatttgatattgaaaaggcaaagctcatgtgggctaacatgatccagtggaggaaagagtatggtactgatacaattatggaggt |
7210125 |
T |
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