View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_266 (Length: 271)

Name: NF11737A_low_266
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_266
NF11737A_low_266
[»] chr3 (5 HSPs)
chr3 (17-254)||(11897148-11897405)
chr3 (17-176)||(26432588-26432747)
chr3 (178-255)||(26432769-26432846)
chr3 (227-255)||(38647305-38647333)
chr3 (227-255)||(53608423-53608451)
[»] chr8 (3 HSPs)
chr8 (17-254)||(23132475-23132732)
chr8 (22-170)||(14760026-14760174)
chr8 (227-255)||(38348466-38348494)
[»] chr2 (2 HSPs)
chr2 (17-254)||(14653570-14653827)
chr2 (121-178)||(573285-573342)
[»] chr1 (2 HSPs)
chr1 (17-254)||(20284849-20285106)
chr1 (121-178)||(50451991-50452048)
[»] scaffold0036 (1 HSPs)
scaffold0036 (121-172)||(76006-76057)
[»] chr4 (4 HSPs)
chr4 (124-170)||(54477407-54477453)
chr4 (121-178)||(3881811-3881868)
chr4 (227-255)||(33803974-33804002)
chr4 (227-255)||(54477530-54477558)
[»] chr5 (1 HSPs)
chr5 (136-170)||(20585630-20585664)
[»] chr6 (2 HSPs)
chr6 (112-176)||(13599681-13599745)
chr6 (227-255)||(24893962-24893990)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11897405 - 11897148
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |||    
T  11897405 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagc 11897306  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 196  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                    |||||||||||||||||| |||    
T  11897305 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 11897206  T
Q  197 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatggtgatgt 254  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  11897205 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 26432588 - 26432747
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| || |||||    
T  26432588 ggacatcatttgcaaaaaggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagc 26432687  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag 176  Q
     || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  26432688 ggatagcttttccatgcaaatgatgaagagataaggggacaatggatcaccttgtcggag 26432747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Original strand, 26432769 - 26432846
Alignment:
Q  178 cggcaacttgttcccattccaaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||||||  | |  |||   || |||||||||||||| ||||||||||||||    
T  26432769 cggcaacttgttcccattccaaagtatagagtagtttgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 38647305 - 38647333
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  38647305 caatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 53608423 - 53608451
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  53608423 caatgcatgatgagcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 23132475 - 23132732
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  23132475 ggacatcatctgcaaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 23132574  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 196  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||                    |||||||||||||||||| |||    
T  23132575 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttc 23132674  T
Q  197 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatggtgatgt 254  Q
    ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||    
T  23132675 caaagtatagagtaactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 14760174 - 14760026
Alignment:
Q  22 tcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagctgaaa 121  Q
    |||||||||||||| || || ||||  || |||||||||   |||||||| |  ||| |||| ||||||||   ||| ||||| ||||| |||   || |    
T  14760174 tcatctgcaaatagtaggtgagatatctggggccccgtatttgtgatttgaaccggttcccaacttccttgattgaccgctgaatttatagcaatagaga 14760075  T
Q  122 gcttttccatgcaaaggatgaagagataaggggacaacggatcaccttg 170  Q
    |||||||||| ||||| |||||||| || |||||||||||||| |||||    
T  14760074 gcttttccatacaaagaatgaagaggtatggggacaacggatctccttg 14760026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 38348494 - 38348466
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  38348494 caatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 14653570 - 14653827
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  14653570 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagc 14653669  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcgg--------------------aggcggcaacttgttcccattc 196  Q
     || ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||                    ||||||||||||||||||||||    
T  14653670 ggatagcttttccatgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattc 14653769  T
Q  197 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatggtgatgt 254  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14653770 caaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 573342 - 573285
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 178  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| |||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggc 573285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 20285106 - 20284849
Alignment:
Q  17 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttattgcagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  20285106 ggacatcatctgcaaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagc 20285007  T
Q  117 tgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcg--------------------gaggcggcaacttgttcccattc 196  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||                     ||||||||||   ||||| |||    
T  20285006 tgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttc 20284907  T
Q  197 caaagtatagagtaactcggagaacctacgcaatgcatgatgagcttgatggtgatgt 254  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  20284906 caaagtatagagtaactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 50452048 - 50451991
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 178  Q
    ||||| ||||| ||||| |||||||| ||||| || | ||||||||||||||||||||    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggc 50451991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 76057 - 76006
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtc 172  Q
    ||||||||||||||||||||||| ||||||||||||||| | ||||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtc 76006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 54477407 - 54477453
Alignment:
Q  124 ttttccatgcaaaggatgaagagataaggggacaacggatcaccttg 170  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttg 54477453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 3881868 - 3881811
Alignment:
Q  121 agcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggaggc 178  Q
    ||||||||||| ||||| |||||||| ||| | || | ||||||||||||||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggc 3881811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 33804002 - 33803974
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  33804002 caatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 54477530 - 54477558
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  54477530 caatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 170
Target Start/End: Complemental strand, 20585664 - 20585630
Alignment:
Q  136 aggatgaagagataaggggacaacggatcaccttg 170  Q
    ||||||||||||||||| |||||||||||||||||    
T  20585664 aggatgaagagataaggtgacaacggatcaccttg 20585630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 13599745 - 13599681
Alignment:
Q  112 gcagctgaaagcttttccatgcaaaggatgaagagataaggggacaacggatcaccttgtcggag 176  Q
    ||||||||||| |||||||| || | ||||||||||||||| || |  ||||||||||| |||||    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggag 13599681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Original strand, 24893962 - 24893990
Alignment:
Q  227 caatgcatgatgagcttgatggtgatgtc 255  Q
    |||||||||||||||||||||||||||||    
T  24893962 caatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University