View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_269 (Length: 270)
Name: NF11737A_low_269
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_269 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 26943761 - 26943510
Alignment:
| Q |
19 |
catcaagttagttttacttcgttctgtttcatgactgatccttctattacttgctttctgcacatctggaaaactaaactcaagaccagtggtaactctt |
118 |
Q |
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| T |
26943761 |
catcaagttagttttacttcgttctgtttcatgactgatccttctattacttgctttctgcacatctggaaaactaaactcaagaccagtggtaactctt |
26943662 |
T |
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| Q |
119 |
acttcaggtcgtggtccaaaccttttgcatgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagtt |
218 |
Q |
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| T |
26943661 |
acttcaggtcatggtccaaaccttttgcatgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcctgaattgttatatggagtt |
26943562 |
T |
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| Q |
219 |
aatcaaaatttgtcaaaggttggtgtttctcatttgcaatgttaccactctg |
270 |
Q |
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| T |
26943561 |
aatcggaatttgtcaaaggttggtgtttctcatttgcaatgttaccactctg |
26943510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 252
Target Start/End: Original strand, 26979200 - 26979304
Alignment:
| Q |
148 |
tgtgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatcaaaatttgtcaaaggttggtgtttc |
247 |
Q |
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| T |
26979200 |
tgtgcacagtatgtggtgaacctatctcccaaactgctcaatcatttatgcctgagttgatgtacggagtaaatcggagtttggtaaaggttggtgttac |
26979299 |
T |
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| Q |
248 |
tcatt |
252 |
Q |
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| T |
26979300 |
tcatt |
26979304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 27003036 - 27002964
Alignment:
| Q |
150 |
tgcacagtatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatc |
222 |
Q |
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| T |
27003036 |
tgcacaatatgtggtgaacctctctcccaaactgctcaatcatttatgcctgagttgatgtatggagtaaatc |
27002964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 252
Target Start/End: Complemental strand, 26988253 - 26988158
Alignment:
| Q |
157 |
tatggggtgaacctctctcgcaaactgctcaatcatttatgcccgaattgttatatggagttaatcaaaatttgtcaaaggttggtgtttctcatt |
252 |
Q |
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| T |
26988253 |
tatgtggtgaacctctctcccaaaccgctcaatcatttatgcctgagttgatgtatggagtaaatcggagtttggcaaaggttagtggtactcatt |
26988158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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