View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_271 (Length: 269)
Name: NF11737A_low_271
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_271 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold1361 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 10909522 - 10909266
Alignment:
| Q |
11 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
10909522 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttattaaccaagggttttcttcacttcccaaacaaaatgacagggttagt |
10909423 |
T |
|
| Q |
111 |
tttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
209 |
Q |
| |
|
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909422 |
tttgcgaacgaaatggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
10909323 |
T |
|
| Q |
210 |
aggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
10909322 |
aggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
10909266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 2409728 - 2409983
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| |||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
2409728 |
tggtgaagattttgatggtgagtggtgattttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatggcggtgttagtttt |
2409827 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
211 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
2409828 |
gcgaacaaaatggccgcaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgag |
2409927 |
T |
|
| Q |
212 |
gtatcgtaacca-gctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||| |||| | ||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
2409928 |
gtatcataactaggctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
2409983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 734445 - 734605
Alignment:
| Q |
107 |
tagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttc-gcacaaactcaa |
204 |
Q |
| |
|
|||||| ||||||||| | ||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| | || ||||||||| |
|
|
| T |
734445 |
tagtttcgcgaacaaa-tagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaa |
734543 |
T |
|
| Q |
205 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
734544 |
ctccgaggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
734605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 2409698 - 2409736
Alignment:
| Q |
21 |
gattgtggttgtgagtggtggttttgttggtggtgaaga |
59 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
2409698 |
gattgtggtggtgggtggtggttttgttggtggtgaaga |
2409736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 42680553 - 42680809
Alignment:
| Q |
11 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagt |
110 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
42680553 |
atatggtaaagattgtggttatgagtggtggttttgttggtggtgaagacttgttaatcaagggttttcttcacttcccaaacaaaatgacggggtttgt |
42680652 |
T |
|
| Q |
111 |
tttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactccg |
209 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
42680653 |
tttgcgaacaaaatggttacaaagtgaagttttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttcgcacaaactcaactttg |
42680752 |
T |
|
| Q |
210 |
aggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
42680753 |
aggtatcgtaaccagctctgatgccaaatctggctcagggacaaaagaaaatgtaga |
42680809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 8733342 - 8733521
Alignment:
| Q |
89 |
caaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat |
187 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8733342 |
caaacaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgat |
8733441 |
T |
|
| Q |
188 |
tttt-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| || ||||| |
|
|
| T |
8733442 |
tttttcgctcaaactcaactccgaggtattgtaaccagctctgatgccaaatctggctcagggacaaaagagaaggtaga |
8733521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 92 - 266
Target Start/End: Complemental strand, 19787116 - 19786940
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
190 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19787116 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttactcacttgaaaactcactttccgttgatttt |
19787017 |
T |
|
| Q |
191 |
t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| ||| ||||| |
|
|
| T |
19787016 |
ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatctagctcagggacaaaaggaaaggtaga |
19786940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 3052598 - 3052371
Alignment:
| Q |
20 |
agattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaac |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
3052598 |
agattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttagcgaac |
3052499 |
T |
|
| Q |
120 |
aaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgattttt--cgcacaaactcaactccgaggtatc |
216 |
Q |
| |
|
||||||||| |||||||||| ||||| |||||| ||||||| | |||||||||||||||||| ||| ||||||||||||| | || | |
|
|
| T |
3052498 |
aaaatggccgcaaagtgaagttttacgaaggcagctccttg------------cacactttccgttgattttttccgctcaaactcaactccaaagttac |
3052411 |
T |
|
| Q |
217 |
gtaaccagctctgatgccaaatatggctcaggaacaaaag |
256 |
Q |
| |
|
|||||||||||||||| ||||| ||||| ||| ||||||| |
|
|
| T |
3052410 |
gtaaccagctctgatgtcaaatctggctgagggacaaaag |
3052371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 16534985 - 16535151
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
190 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16534985 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt |
16535084 |
T |
|
| Q |
191 |
tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag |
256 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16535085 |
cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag |
16535151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 92 - 256
Target Start/End: Complemental strand, 16630677 - 16630511
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
190 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16630677 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgatttt |
16630578 |
T |
|
| Q |
191 |
tc-gcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaag |
256 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
|
|
| T |
16630577 |
cccgcgcaaactcaactccgaggtatcgtaaccagctctgatgccaaatctggctcggggacaaaag |
16630511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 3053423 - 3053565
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||| |
|
|
| T |
3053423 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaaaacttgttaaccaagggttttcctcacttcccaaacaaaatgacgatgttagttta |
3053522 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactc |
155 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
3053523 |
gcgaacaaaatggccgcaaagtgaagttttacgaaggcaactc |
3053565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 121 - 266
Target Start/End: Complemental strand, 3933021 - 3932873
Alignment:
| Q |
121 |
aaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggtatcgt |
218 |
Q |
| |
|
|||| ||| |||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
3933021 |
aaatagccgcaaagtgaagatttaagaaagcaactccttgctcacttgaaaactcacttttcgttgattttcccgcgcaaactcaactccgaggtatcgt |
3932922 |
T |
|
| Q |
219 |
aacc-agctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
3932921 |
aaccaagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
3932873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 248
Target Start/End: Original strand, 21768933 - 21769077
Alignment:
| Q |
105 |
gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc |
202 |
Q |
| |
|
|||||||| ||||||||| |||| |||||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||| ||| | ||||||| |
|
|
| T |
21768933 |
gttagtttcgcgaacaaa-tggctacaaagtgaagttttgagaaagcaactccttgctcgcttgaaaactcactttccgtttatttcttctctcaaactc |
21769031 |
T |
|
| Q |
203 |
aactccgaggtatcgtaaccagctctgatgccaaatatggctcagg |
248 |
Q |
| |
|
|||||| |||||||||||| ||||||| | ||||| | ||||||| |
|
|
| T |
21769032 |
aactccaaggtatcgtaacttgctctgacgtcaaattttgctcagg |
21769077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 3933130 - 3933033
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggta |
214 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||||||| ||||||||||||||| ||||||||||| ||||| ||||| |||||| |||||| |
|
|
| T |
3933130 |
aaatggccgcaaagtgaagttttgagaaagcaactccttgctctcacttgaaaactcactctccgttgatttcttcgctcaaacacaactctgaggta |
3933033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 16534903 - 16534974
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16534903 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16534974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 16630759 - 16630688
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16630759 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
16630688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 19787198 - 19787127
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
19787198 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
19787127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 8733263 - 8733334
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
8733263 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccattgattt |
8733334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 42277551 - 42277808
Alignment:
| Q |
11 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
42277551 |
atatggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaacggttttcttcacttcccaaacaaaatgacagggttagt |
42277650 |
T |
|
| Q |
111 |
tttgcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactcc |
208 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42277651 |
tttgcaaacaaaatggccgcaaagtgaagttttactaaggcaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactcc |
42277750 |
T |
|
| Q |
209 |
gaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42277751 |
gaggtatcgtaaccagctctgatatcaaatctggctcagggacaaaaggaaaggtaga |
42277808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 266
Target Start/End: Complemental strand, 31487194 - 31487043
Alignment:
| Q |
117 |
aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggta |
214 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31487194 |
aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta |
31487095 |
T |
|
| Q |
215 |
tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
31487094 |
tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
31487043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 31487263 - 31487186
Alignment:
| Q |
21 |
gattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg |
99 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31487263 |
gattgtggtgatgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg |
31487186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 29742 - 29488
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
29742 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggtgttagtttc |
29643 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
211 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| || |||||||||| ||||| |
|
|
| T |
29642 |
acgaacaaaatggccgtaaagtgaagttttacaaaggcaagtccttgctcacttgaaaacccactttccgttgatttttttgctcaaactcaacgccgag |
29543 |
T |
|
| Q |
212 |
gtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
29542 |
gtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
29488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1361 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: scaffold1361
Description:
Target: scaffold1361; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 47 - 266
Target Start/End: Complemental strand, 335 - 114
Alignment:
| Q |
47 |
ttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaag-tttaca |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
335 |
ttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacggggttagttttacgaacaaaatggccgcaaagtgaagttttaca |
236 |
T |
|
| Q |
146 |
aaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
235 |
aaggcaactccttgctcacttgaaaactcacttttcgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctgataccaaatctggct |
136 |
T |
|
| Q |
245 |
caggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||| ||||||| ||| ||||| |
|
|
| T |
135 |
cagggacaaaaggaaaggtaga |
114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 256
Target Start/End: Complemental strand, 37208279 - 37208054
Alignment:
| Q |
32 |
tgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccaca |
131 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||| || |
|
|
| T |
37208279 |
tgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatggtggtgttagtttcgcgaacaaaatggccgca |
37208181 |
T |
|
| Q |
132 |
aagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgattttt-cgcacaaactcaactccgaggtatcgtaaccagctctg |
229 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37208180 |
aagtgaagttttacaaaggcaactccttgcgcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccagctctg |
37208081 |
T |
|
| Q |
230 |
atgccaaatatggctcaggaacaaaag |
256 |
Q |
| |
|
||||||||| ||||||||| ||||||| |
|
|
| T |
37208080 |
atgccaaatctggctcagggacaaaag |
37208054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 266
Target Start/End: Original strand, 11852025 - 11852201
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgatttt |
190 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11852025 |
acaaaatgacggtgttagttttgcgatcaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgtaaactcactttccgtttatttt |
11852124 |
T |
|
| Q |
191 |
t-cgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
| ||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
11852125 |
ttcgctcaaactcaactccgaggtatcataaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
11852201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 121 - 269
Target Start/End: Complemental strand, 15469379 - 15469229
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgt |
218 |
Q |
| |
|
||||| |||||||||||||||| | || |||||| ||| |||||||||||| | || || |||||||| ||| | |||||||||||| |||||||| | |
|
|
| T |
15469379 |
aaatgaccacaaagtgaagttttgagaaagcaacttcttactcacttgaaaattgaccttttgttgatttcttctctcaaactcaactctgaggtatcat |
15469280 |
T |
|
| Q |
219 |
aaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtagaaaa |
269 |
Q |
| |
|
|||| ||||||||||||| | ||||||||| ||||||| ||| ||| |||| |
|
|
| T |
15469279 |
aacctgctctgatgccaattctggctcagggacaaaaggaaaggtaaaaaa |
15469229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 189
Target Start/End: Original strand, 11851985 - 11852014
Alignment:
| Q |
160 |
ctcacttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11851985 |
ctcacttgaaaactcactttccgttgattt |
11852014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 36 - 266
Target Start/End: Complemental strand, 45162570 - 45162338
Alignment:
| Q |
36 |
tggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagt |
135 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
45162570 |
tggtggttttgttggtggtgaaga-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagt |
45162472 |
T |
|
| Q |
136 |
gaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatg |
232 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
45162471 |
gaagttttacaaaggcaactccttgctcacttgaaaactcactttacgttgattttttcgcacgaactcaactccgaggtatcataactaggctctgatg |
45162372 |
T |
|
| Q |
233 |
ccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
45162371 |
ccaaatctggctcagggacaaaaggaaaggtaga |
45162338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 42470432 - 42470627
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
42470432 |
tggtgaagattgtggtggtgagcggtaattttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttc |
42470531 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
42470532 |
acgaacaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
42470627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 13774460 - 13774310
Alignment:
| Q |
119 |
caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat |
215 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| |
|
|
| T |
13774460 |
caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat |
13774361 |
T |
|
| Q |
216 |
cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
13774360 |
cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
13774310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 42470634 - 42470794
Alignment:
| Q |
107 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
204 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
42470634 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa |
42470732 |
T |
|
| Q |
205 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
42470733 |
ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
42470794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 263
Target Start/End: Original strand, 24907984 - 24908099
Alignment:
| Q |
149 |
gcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
247 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||| ||||| | |
|
|
| T |
24907984 |
gcaactccttgctcacttaaaaactcactttctgttgatttcttcgctcaaactcaactctgaggtatcgtaacctgctctaataccaaatttggcttaa |
24908083 |
T |
|
| Q |
248 |
gaacaaaagaaaatgt |
263 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
24908084 |
ggacaaaaggaaatgt |
24908099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 13774517 - 13774467
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt |
142 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
13774517 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt |
13774467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 13774599 - 13774528
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
13774599 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
13774528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 38 - 266
Target Start/End: Complemental strand, 88735 - 88505
Alignment:
| Q |
38 |
gtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtga |
137 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
88735 |
gtggttttgttggtggtgaaaa-ttgttaaccaagggttttcttcacttcccaaacaaaatagcggtgttagttttgcgaacaaaatggccgcaaagtga |
88637 |
T |
|
| Q |
138 |
ag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatcgtaacca-gctctgatgcc |
234 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| || || |
|
|
| T |
88636 |
agttttacaaaggaaactccttgctcacttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggtatcgtaaccaggctctaatacc |
88537 |
T |
|
| Q |
235 |
aaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
88536 |
aaatctggctcagggacaaaaggaaaggtaga |
88505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 20642584 - 20642346
Alignment:
| Q |
19 |
aagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagttttgcgaa |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||| |
|
|
| T |
20642584 |
aagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcccaaacaaaatgacagtgttagtttcgcgaa |
20642485 |
T |
|
| Q |
119 |
caaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgaggtatc |
216 |
Q |
| |
|
||||||||| |||||||||| ||| || | |||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
20642484 |
caaaatggctgcaaagtgaagttttccacatgcaactccttgctcacttgaaaactcactttccgttgattttttcgctaaaactcgactccgaggtatc |
20642385 |
T |
|
| Q |
217 |
gtaaccagctctgatgccaaatatggctcaggaacaaaa |
255 |
Q |
| |
|
|||||||||| || || ||| | | ||||||| |||||| |
|
|
| T |
20642384 |
gtaaccagctttggtgtcaattcttgctcagggacaaaa |
20642346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 18965923 - 18966125
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
18965923 |
tggtgaagattgtggtggtgagtggtggttttgttggtggtgaagacttgttaaccaagagttttcttcacttcccaatcaaaatgacggtgttagtttc |
18966022 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaag-tttacaaaggcaactccttgctcacttgaaaactcactttccgttga-tttttcgcacaaactcaactccgag |
211 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
18966023 |
ccgaacaaaatggccgcaaagtgaagttttccataggcaactccatgctcacttgaaaactcactttccgttgattttttcgctataactcaactccgag |
18966122 |
T |
|
| Q |
212 |
gta |
214 |
Q |
| |
|
||| |
|
|
| T |
18966123 |
gta |
18966125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 119 - 266
Target Start/End: Complemental strand, 4531144 - 4530994
Alignment:
| Q |
119 |
caaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttgat--ttttcgcacaaactcaactccgaggtat |
215 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||| |
|
|
| T |
4531144 |
caaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcacttgaaaactcactttccgttgatttttttcgctcaacctcaacttcgaggtat |
4531045 |
T |
|
| Q |
216 |
cgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4531044 |
cgtaaccagctctgataccaaatctggctcagggacaaaaggaaaggtaga |
4530994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 1701483 - 1701344
Alignment:
| Q |
120 |
aaaatggccacaaagtgaagtttac-aaaggcaactccttgctcacttgaaaactcac-tttccgttgattt-ttcgcacaaactcaactccgaggtatc |
216 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||| ||||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||||||| |
|
|
| T |
1701483 |
aaaatggctgcaaagtgaagttttggaaaagcaactccttgttcacttgaaaacttactttttcgttgatttcttcgctcaaactgaactctgaggtatc |
1701384 |
T |
|
| Q |
217 |
gtaaccagctctgatgccaaatatggctcaggaacaaaag |
256 |
Q |
| |
|
||| ||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
1701383 |
ttaatatgctctgatgtcaaatctggttcagggacaaaag |
1701344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 18966157 - 18966206
Alignment:
| Q |
187 |
tttttcgcacaaactcaactccgaggtatcgtaaccagctctgatgccaa |
236 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
18966157 |
tttttcgctcaaactcaactccgaggtatcgtaaccagttctgctgccaa |
18966206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 4531201 - 4531151
Alignment:
| Q |
92 |
acaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt |
142 |
Q |
| |
|
|||||||||||| |||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
4531201 |
acaaaatgacggtgttagtttcgcgatcaaaatggccgcaaagtgaagttt |
4531151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 4531283 - 4531212
Alignment:
| Q |
121 |
aaatggccacaaagtgaagtttaca-aaggcaactccttgctc--acttgaaaactcactttccgttgattt |
189 |
Q |
| |
|
|||||||| ||||||||||||| | || |||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4531283 |
aaatggccgcaaagtgaagttttgagaaagcaactccttactctcacttgaaaactcactttccgttgattt |
4531212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 188
Target Start/End: Complemental strand, 26306890 - 26306778
Alignment:
| Q |
77 |
ttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactca |
175 |
Q |
| |
|
||||||| ||| |||||||||||| || |||||| | ||||||||||| ||| |||||||||||| || || || | | || |||||||||||||| | |
|
|
| T |
26306890 |
ttcttcatttcccaaacaaaatgaaggtgttagtgtcgcgaacaaaatagccgtaaagtgaagtttcacgaacgcgatttttttctcacttgaaaactta |
26306791 |
T |
|
| Q |
176 |
ctttccgttgatt |
188 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
26306790 |
ctttccattgatt |
26306778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 4877512 - 4877317
Alignment:
| Q |
14 |
tggtaaagattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatgacggggttagtttt |
113 |
Q |
| |
|
|||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
4877512 |
tggtgaagattgtggtggtgagcggtaattttgttggtggtgaagacttgttaaccaagggttttcttcactttccaaacaaaatgacggtgctagtttc |
4877413 |
T |
|
| Q |
114 |
gcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactcactttccgttga--tttttcgcacaaactcaact |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
4877412 |
acgaacaaaatggccgcaaagtgaagtttcacaaaggcaactccttgctcttttgaaaactcactttccgttgatttttttcgctcaaactcaact |
4877317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 36379340 - 36379491
Alignment:
| Q |
117 |
aacaaaatggccacaaagtgaagttta-caaaggcaactccttgctcacttgaaaactcactttccgttgatttt-tcgcacaaactcaactccgaggta |
214 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36379340 |
aacaaaatggccgcaaagtgaagtttaacaaaggcaactccttgctctcttgaaaactcactttccgttgattttttcgcacaaactcaactccgaggta |
36379439 |
T |
|
| Q |
215 |
tcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
36379440 |
tcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
36379491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 266
Target Start/End: Complemental strand, 4877310 - 4877150
Alignment:
| Q |
107 |
tagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactcaa |
204 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4877310 |
tagtttcgcgaacaaa-tggccgcaaagtgaagttttaagaaagcaacaccttgctcacttgaaaactcactttccgttgatttcttcgctcaaactcaa |
4877212 |
T |
|
| Q |
205 |
ctccgaggtatcgtaaccagctctgatgccaaatatggctcaggaacaaaagaaaatgtaga |
266 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||| |
|
|
| T |
4877211 |
ctccgtggtatcgtaaccagctctgatgccaaatctggctcagggacaaaaggaaaggtaga |
4877150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 36379271 - 36379348
Alignment:
| Q |
21 |
gattgtggttgtgagtggtggttttgttggtggtgaagacttgttaaccaagggttttcttcacttcacaaacaaaatg |
99 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36379271 |
gattgtggtgatgagtggtggttttgtgggtggtgaaga-ttgttaaccaagggttttcttcacttcctaaacaaaatg |
36379348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 7938990 - 7939104
Alignment:
| Q |
76 |
tttcttcacttcacaaacaaaatgacggggttagttttgcgaacaaaatggccacaaagtgaagttt-acaaaggcaactccttgctcacttgaaaactc |
174 |
Q |
| |
|
|||||| ||||| |||||| ||| ||| ||| ||||| ||||||||||| | |||||||| |||| |||| | ||||||||| |||||| |||||||| |
|
|
| T |
7938990 |
tttcttaacttcccaaacataataacgatgtttgttttaagaacaaaatgggcgcaaagtgatgtttcacaaggacaactccttactcactggaaaactc |
7939089 |
T |
|
| Q |
175 |
actttccgttgattt |
189 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
7939090 |
actttccgtttattt |
7939104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 64273 - 64134
Alignment:
| Q |
105 |
gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc |
202 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||| || |||| |||||||| |||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
64273 |
gttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactc |
64179 |
T |
|
| Q |
203 |
aactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
247 |
Q |
| |
|
||||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
64178 |
aactctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
64134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 247
Target Start/End: Complemental strand, 71605 - 71466
Alignment:
| Q |
105 |
gttagttttgcgaacaaaatggccacaaagtgaagtttaca-aaggcaactccttgctcacttgaaaactcactttccgttgattt-ttcgcacaaactc |
202 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||| || |||| |||||||| |||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
71605 |
gttagtttcgcgaacaaa-tggccgcaaagtgaagttttgtgaaagcaaatccttgcttacttgaaaacg----ttccgttgatttcttcgctcaaactc |
71511 |
T |
|
| Q |
203 |
aactccgaggtatcgtaaccagctctgatgccaaatatggctcag |
247 |
Q |
| |
|
||||| |||||| ||||||| ||| ||||| ||||| ||| |||| |
|
|
| T |
71510 |
aactctgaggtagcgtaacctgctttgatgtcaaatttggatcag |
71466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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