View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_275 (Length: 267)
Name: NF11737A_low_275
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_275 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 31170845 - 31171108
Alignment:
| Q |
11 |
acatcaattctaaatcatgagaaatccatcaagaaa-------gtatgaaaagttaaaaagcaagtgatatttgctcaaaattgtttgtcataaattagt |
103 |
Q |
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| T |
31170845 |
acataaattctaaatcatgagaaatccatcaagaaattttctagtatgaaaagttaaaaagcaagtgatatttgctcaaaattgtttgtcataaattagt |
31170944 |
T |
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| Q |
104 |
agccattgagcagaaaggnnnnnnntacgacattatgaaattatcttacgaacagagatcttaaggagggaaaaggaagaaataaacttttatgactttg |
203 |
Q |
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| T |
31170945 |
agccatcgagcagaaagggaaaaaatacgacattatgaaattatcttacgaacagagatcttaaggagggaaaaggaagaaataaacttttatgactttg |
31171044 |
T |
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| Q |
204 |
gccttacattgactctttctatacggcgcatttcgtcttcaagtaatgatagttgtgcagctga |
267 |
Q |
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| T |
31171045 |
gccttacattgactctttctatacggcgcatttcgtcttcaagtaatgatagttgtgcagctga |
31171108 |
T |
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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 35224424 - 35224485
Alignment:
| Q |
203 |
ggccttacattgactctttctatacggcgcatttcgtcttcaagtaatgatagttgtgcagc |
264 |
Q |
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| T |
35224424 |
ggccttacattgactctttctatacggcgcatttcatcttcgagtaatgatagctgtgcagc |
35224485 |
T |
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