View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_280 (Length: 266)
Name: NF11737A_low_280
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_280 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 37575747 - 37576011
Alignment:
| Q |
1 |
gtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagt |
100 |
Q |
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| T |
37575747 |
gtcgcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagt |
37575846 |
T |
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| Q |
101 |
cacaacagtttactgacacattgcttgccatttgcttttgctccccgttgtttgatcatgattcatttccaccgatcaaccatacccttgccggatctac |
200 |
Q |
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| T |
37575847 |
cacaaaaggttaccgacacattgcttgccatttgcttttgctccccattgtttgatcatgattcatttccaccgatcaaccataaccttgccggatctac |
37575946 |
T |
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| Q |
201 |
ggtaattacattgttctatgctttttgttactgctattcttaactatccgttatacttttcgttg |
265 |
Q |
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| T |
37575947 |
ggtaattacattgttctatgctttttgttactgctattcttaactatccgttatactttttgttg |
37576011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 37576009 - 37576053
Alignment:
| Q |
121 |
ttgcttgccatttgcttttgctccccgttgtttgatcatgattca |
165 |
Q |
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| T |
37576009 |
ttgcttgccatttgcttttgctccctattgattgatcatgattca |
37576053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 10438773 - 10439001
Alignment:
| Q |
4 |
gcatttgttgtgcatgtgggaaaggtttatacgtcaagtcagcaaaagaagcaatgggtttttgtgactgatggatccatcatgaatggtttacagtcac |
103 |
Q |
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| T |
10438773 |
gcatttgttgtgcatgtcggaaaggcttatacatcaggtcagcaaaagaagcaatgggtttttgtgactgatggatcgatcatgaaaggtttacaatcag |
10438872 |
T |
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| Q |
104 |
aacagtttactgacacattgcttgccatttgcttttgctccccgttgtttgatcatgattcatttccaccgatcaaccatacccttgccggatctacggt |
203 |
Q |
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| T |
10438873 |
agaagtttacggacacattgcttgctattttcttttgctccccattgattgatcatgattcatttccaccaatcaaccataaccttgctggatctacggt |
10438972 |
T |
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| Q |
204 |
aattacattgttctatgctttttgttact |
232 |
Q |
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|||||||||||||||| | |||||||||| |
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| T |
10438973 |
aattacattgttctataccttttgttact |
10439001 |
T |
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