View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_283 (Length: 265)
Name: NF11737A_low_283
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_283 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 19943201 - 19942940
Alignment:
| Q |
4 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcagtcaatgttcta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19943201 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacgcaagcttctggctctctcagtcaatgttcta |
19943102 |
T |
|
| Q |
104 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaattcgatgtctt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
19943101 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaatttggtgtctt |
19943002 |
T |
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| Q |
204 |
catattcaccaccattatcggttctgagcttcttgatcttcaaacctgtctcattttccacc |
265 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
19943001 |
catattcaccaccattgtcggttctgagctttttgatcttcaaatctgtctcattttccacc |
19942940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 797570 - 797831
Alignment:
| Q |
4 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcagtcaatgttcta |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
797570 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaatttctttggtaagcctgactgcacacgcaagcttctggctctctcagtcaatgttcta |
797669 |
T |
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| Q |
104 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaattcgatgtctt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
797670 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaatttggtgtctt |
797769 |
T |
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| Q |
204 |
catattcaccaccattatcggttctgagcttcttgatcttcaaacctgtctcattttccacc |
265 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
797770 |
catattcaccaccattgtcggttctgagctttttgatcttcaaatctgtctcattttccacc |
797831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 8272257 - 8271996
Alignment:
| Q |
4 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcagtcaatgttcta |
103 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8272257 |
gttgattaagtaagctgatgtgttgactgcttttgcccagaagttctttggtaagcctgactgcacacgcaagcttctggctctctcagtcaatgttcta |
8272158 |
T |
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| Q |
104 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaattcgatgtctt |
203 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8272157 |
ttcatacgctcaactacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaatttggtgtctt |
8272058 |
T |
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| Q |
204 |
catattcaccaccattatcggttctgagcttcttgatcttcaaacctgtctcattttccacc |
265 |
Q |
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|||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||| |
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| T |
8272057 |
catattcaccaccattgtcggttctgagcttttttatcttcaaatctgtctcattttccacc |
8271996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 265
Target Start/End: Complemental strand, 6691256 - 6690995
Alignment:
| Q |
4 |
gttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcagtcaatgttcta |
103 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6691256 |
gttgattaagtaatctgatgtgttgactgcttctgcccagaagttctttggtaagcctgaacgcacacgcaagcttctggctctctcagtcaatgttcta |
6691157 |
T |
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| Q |
104 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaattcgatgtctt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
6691156 |
ttcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaatttggtgtctt |
6691057 |
T |
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| Q |
204 |
catattcaccaccattatcggttctgagcttcttgatcttcaaacctgtctcattttccacc |
265 |
Q |
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|||||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||| |
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| T |
6691056 |
catattcaccaccattgtcggtcctgagctttttgatcttcaaatctctctcattttccacc |
6690995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 9431871 - 9431991
Alignment:
| Q |
1 |
tcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcagtcaatgtt |
100 |
Q |
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||||||||||||||||||| ||||||| |||||||| | ||||| |||||||||||||| |||||| || |||||| | ||||||| |||||||| |
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| T |
9431871 |
tcagttgattaagtaagctaatgtgttaactgcttccgtacagaaccactttggtaagcctgcgtgcacatgcatgcttctcgatctctcattcaatgtt |
9431970 |
T |
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| Q |
101 |
ctattcatacgctcagctaca |
121 |
Q |
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||| ||||||||||| ||||| |
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| T |
9431971 |
ctactcatacgctcaactaca |
9431991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 261
Target Start/End: Original strand, 40336930 - 40337022
Alignment:
| Q |
169 |
gtgctcgtagcaaaacttcttgaattcgatgtcttcatattcaccaccattatcggttctgagcttcttgatcttcaaacctgtctcattttc |
261 |
Q |
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|||||| ||||||||||| || ||| ||||| |||| ||| ||||||||| |||||||| | || || ||||||| |||||||||||||| |
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| T |
40336930 |
gtgctcatagcaaaacttgttaaatatgatgtattcaaattaaccaccattgtcggttctatgttttttattcttcaaccctgtctcattttc |
40337022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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