View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_284 (Length: 265)
Name: NF11737A_low_284
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_284 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 31069237 - 31069397
Alignment:
| Q |
18 |
acaatcacccatcaagatgattccaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
117 |
Q |
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| T |
31069237 |
acaaacacccatcaagatgatttcaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaatgg |
31069336 |
T |
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| Q |
118 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
178 |
Q |
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| T |
31069337 |
tcaaggaatatcacaagattcatctcaacacatttcgttaatataaataagaagataatag |
31069397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 11593109 - 11592990
Alignment:
| Q |
24 |
acccatcaagatgattccaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
122 |
Q |
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| T |
11593109 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11593010 |
T |
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| Q |
123 |
gaatatcacaagattcatct |
142 |
Q |
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| T |
11593009 |
gaatttcacaagatgcatct |
11592990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 11645010 - 11645129
Alignment:
| Q |
24 |
acccatcaagatgattccaccaatatcgattcaagtttcatagaaaacaccgaagacaaaatgaaagaaattgcttcagttcttccaaaaat-ggtcaag |
122 |
Q |
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||||||||| | |||| |||||| || ||||| ||||||||||||||||| |||||| ||| |||||| |||||| ||||||||||| || ||||||| |
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| T |
11645010 |
acccatcaacaagattacaccaacatggattctggtttcatagaaaacaccaaagacagaatcaaagaagctgcttctgttcttccaaacatgggtcaag |
11645109 |
T |
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| Q |
123 |
gaatatcacaagattcatct |
142 |
Q |
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|||| ||||||||| ||||| |
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| T |
11645110 |
gaatttcacaagatgcatct |
11645129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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