View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_286 (Length: 264)
Name: NF11737A_low_286
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_286 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 41404211 - 41404458
Alignment:
| Q |
17 |
acatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaagcttaa |
116 |
Q |
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| T |
41404211 |
acatcatctcttaacgaatcgatggatagatatactcagttgtttgagaaaagtatgagcaaagagatcaagtggcaaagctcgaagtctaaaagcttaa |
41404310 |
T |
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| Q |
117 |
gattgacaaacgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggattcattct |
216 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41404311 |
gattgacaaatgatgataagattcacaagagtaggcatgctcgtatgttttcaagaagcaatttgtctatgcctaatcttgagtccttaggatttattct |
41404410 |
T |
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| Q |
217 |
acacgatgttcttattgatacaaatgaagcaaataatacagtggaaag |
264 |
Q |
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| T |
41404411 |
acacgatgttcttattgatacaaatgaagcaaataatacagtggaaag |
41404458 |
T |
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