View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_294 (Length: 261)
Name: NF11737A_low_294
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_294 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 10289724 - 10289968
Alignment:
| Q |
18 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaa-aatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
116 |
Q |
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| T |
10289724 |
atcagaaagagttcgaaaaaatattcacactgcattgaaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaac |
10289823 |
T |
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| Q |
117 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
216 |
Q |
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| T |
10289824 |
cacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaact |
10289923 |
T |
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| Q |
217 |
ttgtggcacaacagtatcgtttcttgctgacagatcgggagtttg |
261 |
Q |
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| T |
10289924 |
ttgtggcacaacagtattgtttcttgctgacagatcaggagtttg |
10289968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 52 - 259
Target Start/End: Complemental strand, 9747748 - 9747543
Alignment:
| Q |
52 |
ttgaaaaaatattattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattg |
151 |
Q |
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| T |
9747748 |
ttgaaaaaagattatttgtcgataaaattgcacatgaagtaagaacataataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattg |
9747650 |
T |
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| Q |
152 |
ctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagat |
251 |
Q |
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| T |
9747649 |
ctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagctgatgtctcggaaaac-ttgtggcacagcagtatcatctcttgaggacaaat |
9747551 |
T |
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| Q |
252 |
cgggagtt |
259 |
Q |
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| T |
9747550 |
caggagtt |
9747543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 10297883 - 10298092
Alignment:
| Q |
20 |
cagaaagagttcgaaaaaatattcacactgcattgaaaaaat-attattggtcgatataattgcgtgtgaagtaaaaacataataaaacaacattaacca |
118 |
Q |
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| T |
10297883 |
cagaaagagttcgaaaaaaagttca----gcattgaaaaaaagattattcaccaatataattgcacgggaagtaaaagcataataaaacaacattaaccg |
10297978 |
T |
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| Q |
119 |
cctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaacttt |
218 |
Q |
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| T |
10297979 |
ccttttt-ttgtatcaaaactatggtatgaat--------------acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaac-tt |
10298062 |
T |
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| Q |
219 |
gtggcacaacagtatcgtttcttgctgaca |
248 |
Q |
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| T |
10298063 |
gtggcacaacagtatcgtctcttgatgaca |
10298092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 34694209 - 34694292
Alignment:
| Q |
124 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
207 |
Q |
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| T |
34694209 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34694292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 34716621 - 34716704
Alignment:
| Q |
124 |
ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtct |
207 |
Q |
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| T |
34716621 |
ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtct |
34716704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 37744192 - 37744082
Alignment:
| Q |
122 |
ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg |
221 |
Q |
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| T |
37744192 |
ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaa--cttgtg |
37744095 |
T |
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| Q |
222 |
gcacaacagtatc |
234 |
Q |
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| T |
37744094 |
gcacaacagtatc |
37744082 |
T |
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