View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_295 (Length: 261)

Name: NF11737A_low_295
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_295
NF11737A_low_295
[»] chr1 (34 HSPs)
chr1 (32-242)||(27523064-27523274)
chr1 (26-242)||(40215028-40215244)
chr1 (32-242)||(25463722-25463932)
chr1 (32-141)||(3559663-3559772)
chr1 (26-242)||(6883527-6883743)
chr1 (26-242)||(19015444-19015660)
chr1 (26-242)||(44094738-44094953)
chr1 (26-242)||(44690830-44691054)
chr1 (26-242)||(36966517-36966733)
chr1 (26-242)||(37821643-37821859)
chr1 (42-242)||(51737561-51737761)
chr1 (32-242)||(41876251-41876461)
chr1 (26-242)||(9910100-9910318)
chr1 (32-145)||(18404488-18404601)
chr1 (26-143)||(33786543-33786660)
chr1 (26-145)||(32000173-32000292)
chr1 (26-145)||(40273742-40273861)
chr1 (26-103)||(16045746-16045823)
chr1 (42-242)||(25973469-25973663)
chr1 (60-242)||(20304939-20305122)
chr1 (165-230)||(32000086-32000151)
chr1 (165-230)||(33786451-33786516)
chr1 (32-104)||(10167446-10167518)
chr1 (177-242)||(16045784-16045849)
chr1 (177-242)||(32000253-32000318)
chr1 (177-242)||(40215002-40215067)
chr1 (165-230)||(40273888-40273953)
chr1 (197-242)||(52064386-52064431)
chr1 (26-102)||(34519798-34519874)
chr1 (177-232)||(44094722-44094777)
chr1 (61-131)||(7335449-7335519)
chr1 (185-230)||(33786629-33786674)
chr1 (60-145)||(51621004-51621085)
chr1 (162-218)||(52329452-52329508)
[»] chr8 (45 HSPs)
chr8 (26-242)||(24844669-24844883)
chr8 (26-242)||(34665422-34665637)
chr8 (26-242)||(20091610-20091826)
chr8 (26-242)||(3890423-3890641)
chr8 (32-242)||(37985865-37986074)
chr8 (26-242)||(17841659-17841875)
chr8 (35-242)||(1645773-1645981)
chr8 (26-145)||(24211459-24211578)
chr8 (26-242)||(40779938-40780154)
chr8 (32-242)||(6108042-6108252)
chr8 (26-242)||(15187600-15187816)
chr8 (26-217)||(8453874-8454065)
chr8 (26-242)||(30834864-30835072)
chr8 (26-242)||(26041922-26042141)
chr8 (26-141)||(27782027-27782142)
chr8 (32-145)||(32393904-32394017)
chr8 (32-145)||(41819684-41819797)
chr8 (33-145)||(10044390-10044502)
chr8 (32-242)||(35353087-35353297)
chr8 (26-145)||(3596947-3597066)
chr8 (26-145)||(32064785-32064904)
chr8 (26-145)||(42754948-42755067)
chr8 (32-242)||(14128910-14129115)
chr8 (26-145)||(7022018-7022137)
chr8 (26-145)||(25581145-25581264)
chr8 (26-145)||(31347688-31347807)
chr8 (26-145)||(39772708-39772826)
chr8 (26-145)||(7017771-7017890)
chr8 (26-145)||(27835359-27835478)
chr8 (32-106)||(15972822-15972896)
chr8 (84-236)||(30055615-30055766)
chr8 (160-242)||(37132489-37132571)
chr8 (155-228)||(41819590-41819663)
chr8 (177-232)||(27782103-27782158)
chr8 (197-242)||(1886625-1886670)
chr8 (177-242)||(32064759-32064824)
chr8 (177-242)||(34665396-34665461)
chr8 (177-242)||(42755028-42755093)
chr8 (155-242)||(10044518-10044604)
chr8 (177-232)||(20091787-20091842)
chr8 (167-230)||(31347596-31347659)
chr8 (180-242)||(38016985-38017047)
chr8 (99-145)||(38017047-38017093)
chr8 (26-67)||(3817914-3817955)
chr8 (177-242)||(30835033-30835097)
[»] chr6 (24 HSPs)
chr6 (26-242)||(18365383-18365598)
chr6 (26-242)||(18370647-18370862)
chr6 (26-242)||(17175830-17176046)
chr6 (32-242)||(17705278-17705484)
chr6 (26-242)||(28675188-28675404)
chr6 (32-235)||(2309239-2309442)
chr6 (26-242)||(33696736-33696953)
chr6 (32-145)||(6031647-6031760)
chr6 (26-145)||(9752151-9752270)
chr6 (26-145)||(33695233-33695352)
chr6 (32-221)||(8515556-8515744)
chr6 (32-145)||(23290990-23291103)
chr6 (26-145)||(25986970-25987089)
chr6 (26-145)||(11548495-11548613)
chr6 (32-145)||(6127321-6127435)
chr6 (155-242)||(29693615-29693702)
chr6 (26-145)||(32702245-32702364)
chr6 (99-228)||(18889466-18889595)
chr6 (165-230)||(11548409-11548474)
chr6 (177-242)||(33695313-33695378)
chr6 (177-242)||(33696710-33696775)
chr6 (177-242)||(6127289-6127354)
chr6 (177-242)||(23291070-23291135)
chr6 (177-229)||(9752231-9752283)
[»] chr7 (29 HSPs)
chr7 (32-242)||(3962025-3962234)
chr7 (26-236)||(20009913-20010122)
chr7 (26-236)||(45637752-45637961)
chr7 (26-242)||(4974544-4974760)
chr7 (32-242)||(42696129-42696340)
chr7 (26-145)||(48880833-48880952)
chr7 (26-242)||(42611851-42612067)
chr7 (32-242)||(29737185-29737401)
chr7 (26-142)||(15329313-15329429)
chr7 (32-242)||(24395018-24395227)
chr7 (32-145)||(25167756-25167869)
chr7 (32-145)||(34482881-34482993)
chr7 (32-145)||(37476986-37477099)
chr7 (26-145)||(15577756-15577875)
chr7 (32-145)||(18037024-18037137)
chr7 (26-142)||(35444598-35444714)
chr7 (27-135)||(40880708-40880816)
chr7 (32-145)||(30848615-30848728)
chr7 (32-145)||(36790372-36790485)
chr7 (26-142)||(15238422-15238538)
chr7 (177-242)||(4974721-4974786)
chr7 (177-242)||(42611825-42611890)
chr7 (177-242)||(45637726-45637791)
chr7 (155-242)||(34483008-34483094)
chr7 (177-242)||(15329287-15329352)
chr7 (185-242)||(15577844-15577901)
chr7 (165-230)||(37476900-37476965)
chr7 (177-242)||(48880913-48880978)
chr7 (202-242)||(36790285-36790325)
[»] chr5 (31 HSPs)
chr5 (26-242)||(8145415-8145629)
chr5 (26-236)||(14138708-14138917)
chr5 (26-228)||(31640763-31640965)
chr5 (32-242)||(33584138-33584348)
chr5 (28-242)||(12850843-12851058)
chr5 (32-242)||(4892248-4892458)
chr5 (32-145)||(11361037-11361150)
chr5 (32-242)||(2477682-2477892)
chr5 (32-242)||(25398284-25398494)
chr5 (32-242)||(37321602-37321812)
chr5 (26-242)||(6043321-6043536)
chr5 (26-230)||(22912877-22913079)
chr5 (26-242)||(3521816-3522031)
chr5 (32-242)||(38899534-38899745)
chr5 (32-242)||(3362824-3363035)
chr5 (61-236)||(27481897-27482074)
chr5 (26-213)||(4433845-4434032)
chr5 (26-113)||(12614671-12614758)
chr5 (26-142)||(17545594-17545710)
chr5 (177-228)||(31640926-31640977)
chr5 (155-235)||(12614553-12614633)
chr5 (81-145)||(36880229-36880293)
chr5 (177-242)||(3362792-3362857)
chr5 (177-242)||(8145389-8145454)
chr5 (177-242)||(38899712-38899777)
chr5 (177-232)||(12614719-12614774)
chr5 (177-242)||(2477650-2477715)
chr5 (177-242)||(6043497-6043562)
chr5 (177-242)||(11361117-11361182)
chr5 (177-242)||(12850815-12850880)
chr5 (185-242)||(14138682-14138739)
[»] chr3 (38 HSPs)
chr3 (32-242)||(33145758-33145968)
chr3 (29-242)||(22426154-22426366)
chr3 (26-242)||(3137223-3137439)
chr3 (26-145)||(30385051-30385170)
chr3 (26-241)||(41883031-41883248)
chr3 (36-242)||(33839581-33839792)
chr3 (32-242)||(37522099-37522309)
chr3 (32-242)||(8320391-8320603)
chr3 (26-242)||(6041924-6042133)
chr3 (26-242)||(33113833-33114050)
chr3 (32-145)||(3574432-3574546)
chr3 (42-242)||(24343603-24343806)
chr3 (32-145)||(3089463-3089576)
chr3 (32-242)||(19650709-19650919)
chr3 (32-242)||(37216862-37217072)
chr3 (32-215)||(42297909-42298092)
chr3 (26-242)||(47738145-47738368)
chr3 (32-145)||(48160951-48161064)
chr3 (32-242)||(3456110-3456320)
chr3 (60-242)||(40327899-40328088)
chr3 (26-145)||(8361951-8362070)
chr3 (32-145)||(42297399-42297513)
chr3 (32-145)||(2754763-2754876)
chr3 (32-242)||(36864841-36865046)
chr3 (29-242)||(46918945-46919151)
chr3 (26-137)||(34482824-34482935)
chr3 (155-242)||(26612916-26613003)
chr3 (26-145)||(41224273-41224392)
chr3 (32-145)||(11347314-11347427)
chr3 (26-145)||(9796935-9797054)
chr3 (110-242)||(30385525-30385656)
chr3 (32-108)||(42921189-42921265)
chr3 (155-236)||(42921295-42921376)
chr3 (177-242)||(3574513-3574578)
chr3 (177-242)||(6041898-6041963)
chr3 (165-230)||(8361859-8361924)
chr3 (165-230)||(9796849-9796914)
chr3 (26-63)||(33839729-33839766)
[»] chr2 (30 HSPs)
chr2 (26-242)||(9293384-9293601)
chr2 (32-242)||(9723451-9723663)
chr2 (32-145)||(3989122-3989235)
chr2 (26-242)||(31174644-31174859)
chr2 (32-242)||(33380253-33380463)
chr2 (32-242)||(35160803-35161015)
chr2 (26-145)||(7475414-7475533)
chr2 (26-242)||(23267871-23268087)
chr2 (26-145)||(21936121-21936241)
chr2 (32-242)||(10661933-10662144)
chr2 (26-145)||(14941273-14941391)
chr2 (26-145)||(27847672-27847791)
chr2 (26-242)||(13354886-13355104)
chr2 (26-145)||(43330952-43331071)
chr2 (43-145)||(16767378-16767480)
chr2 (26-143)||(22591522-22591639)
chr2 (60-145)||(40262642-40262727)
chr2 (32-145)||(21393594-21393707)
chr2 (155-242)||(22592880-22592969)
chr2 (177-242)||(14941352-14941417)
chr2 (177-242)||(9293562-9293627)
chr2 (155-227)||(16767285-16767357)
chr2 (165-235)||(37335824-37335894)
chr2 (177-242)||(10661901-10661966)
chr2 (26-63)||(21393519-21393556)
chr2 (177-242)||(21936095-21936160)
chr2 (177-242)||(35160771-35160836)
chr2 (165-230)||(43331092-43331157)
chr2 (177-233)||(27847655-27847711)
chr2 (26-102)||(37335753-37335829)
[»] scaffold0096 (2 HSPs)
scaffold0096 (26-242)||(41051-41266)
scaffold0096 (177-242)||(41025-41090)
[»] chr4 (46 HSPs)
chr4 (26-242)||(21802129-21802347)
chr4 (26-242)||(36073390-36073605)
chr4 (26-236)||(17655470-17655681)
chr4 (26-145)||(31078725-31078844)
chr4 (32-242)||(42671715-42671925)
chr4 (26-242)||(9088910-9089126)
chr4 (26-144)||(10442696-10442814)
chr4 (26-242)||(46441884-46442100)
chr4 (32-145)||(7745018-7745131)
chr4 (26-242)||(22199301-22199515)
chr4 (29-242)||(37219668-37219888)
chr4 (26-145)||(47290106-47290225)
chr4 (26-242)||(53123071-53123287)
chr4 (27-234)||(37934758-37934965)
chr4 (26-145)||(24392707-24392826)
chr4 (32-242)||(4751492-4751703)
chr4 (26-242)||(36072987-36073207)
chr4 (26-242)||(44893022-44893238)
chr4 (26-242)||(44893466-44893682)
chr4 (32-145)||(23964371-23964484)
chr4 (26-235)||(49387703-49387913)
chr4 (32-145)||(50156484-50156597)
chr4 (26-228)||(30563249-30563452)
chr4 (26-145)||(24128279-24128398)
chr4 (26-144)||(33530596-33530713)
chr4 (26-242)||(2624877-2625093)
chr4 (29-145)||(44744478-44744593)
chr4 (160-242)||(11314060-11314142)
chr4 (32-144)||(36073650-36073762)
chr4 (60-137)||(9111339-9111416)
chr4 (32-97)||(11314188-11314253)
chr4 (177-242)||(33530674-33530739)
chr4 (177-242)||(36072961-36073026)
chr4 (177-242)||(4751460-4751525)
chr4 (165-242)||(10442596-10442672)
chr4 (177-242)||(10442775-10442840)
chr4 (201-242)||(25063383-25063424)
chr4 (177-242)||(31078805-31078870)
chr4 (163-236)||(36073276-36073349)
chr4 (177-242)||(42671683-42671748)
chr4 (177-242)||(49387874-49387939)
chr4 (177-232)||(21802308-21802363)
chr4 (163-242)||(33530493-33530571)
chr4 (177-242)||(2624851-2624916)
chr4 (177-242)||(7745098-7745163)
chr4 (177-242)||(22199275-22199340)
[»] scaffold0085 (2 HSPs)
scaffold0085 (26-242)||(47890-48105)
scaffold0085 (177-242)||(47864-47929)
[»] scaffold0178 (2 HSPs)
scaffold0178 (26-242)||(11661-11877)
scaffold0178 (177-242)||(11635-11700)
[»] scaffold0228 (6 HSPs)
scaffold0228 (26-242)||(25976-26192)
scaffold0228 (26-242)||(16024-16240)
scaffold0228 (26-145)||(8442-8561)
scaffold0228 (177-242)||(8416-8481)
scaffold0228 (177-242)||(15998-16063)
scaffold0228 (177-242)||(25950-26015)
[»] scaffold0204 (1 HSPs)
scaffold0204 (32-145)||(4442-4555)
[»] scaffold0471 (1 HSPs)
scaffold0471 (26-145)||(12882-13001)
[»] scaffold0665 (1 HSPs)
scaffold0665 (32-108)||(3114-3190)
[»] scaffold0041 (1 HSPs)
scaffold0041 (27-135)||(85467-85575)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 27523274 - 27523064
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  27523274 aatgacatgacagaataatcacccttaaattttatcaagaaattgtcccgaaattaatgttagccaataaaatctcatcctggccggaaatcatggggtg 27523175  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
    ||||||||||||||         |||| | |||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  27523174 atgggtgttatgtatttttttttatgaaaagttaataaataagactaaaatcaaagggtgattaatctgccatacgattcttgaatctttcttgataaaa 27523075  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  27523074 tcattcttgat 27523064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 40215028 - 40215244
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  40215028 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcctggccggaaatcat 40215127  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| |  ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||||||||||    
T  40215128 ggggtggtgggtgttatgtattttttttttatgaaatattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt 40215227  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  40215228 -ataaaatcattcttgat 40215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 25463722 - 25463932
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  25463722 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcctggccggaaatcatggggtg 25463821  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||| ||||||||| |||||    
T  25463822 gtgggtgttatgtattttttttttatgaaagattaataaatgagacttaaatctaaaggtgattattgtgccatgtcattcttggatctttctt-ataaa 25463920  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  25463921 atcattcttgat 25463932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 3559663 - 3559772
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  3559663 aatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcctgggcggaaatcatggggtg 3559762  T
Q  132 atgggtgtta 141  Q
     |||||||||    
T  3559763 gtgggtgtta 3559772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 6883527 - 6883743
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  6883527 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 6883626  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || ||||  || | |||||||| |||||||||| ||||||    
T  6883627 ggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgaatattatgccatgtcattcttgaatttttctt 6883726  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  6883727 -ataaaatcattcttgat 6883743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 19015444 - 19015660
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  19015444 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 19015543  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  19015544 ggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 19015643  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  19015644 -ataaaatcattcttgat 19015660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 44094738 - 44094953
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| ||||||||||  |||| ||||||| ||    
T  44094738 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagccaataaaatctcagtctggccggaaatcat 44094837  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | || ||||| ||||||| |||||||||     
T  44094838 ggggtggtgggtgttatgtatttttctttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgtcatgtcattcttggatctttctt- 44094936  T
Q  226 ataaaatcattattgat 242  Q
    ||||||| ||| |||||    
T  44094937 ataaaataattcttgat 44094953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 44691054 - 44690830
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||| ||||| ||||||||| || |||| |||||||||||||||| || | |||||||||||||||| ||||||||||  |||| ||||||| ||    
T  44691054 ttcaagaattacatggcagaataataactcttagattttatcaagaaattatcccaaaattaatgttagccaataaaatctcagtctggccggaaatcat 44690955  T
Q  126 ggggtgatgggtgttatgta--------nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaat 217  Q
    |||||| |||||||||||||                 || | || |||||||||||||||  |||| ||||||| ||| |||||||||| ||||||||||    
T  44690954 ggggtgttgggtgttatgtatttattttttattttttataaaagattaataaataagactggaatctaagggtgattattctgccatgtcattcttgaat 44690855  T
Q  218 ctttcttgataaaatcattattgat 242  Q
    |||||||||||||||||||||||||    
T  44690854 ctttcttgataaaatcattattgat 44690830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 36966733 - 36966517
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  36966733 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 36966634  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  36966633 ggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgttattcttgaatttttctt 36966534  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  36966533 -ataaaatcattcttgat 36966517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 37821859 - 37821643
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  37821859 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 37821760  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | || ||||| |||||||||| ||||||    
T  37821759 ggggtgttgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgtcatgtcattcttgaatttttctt 37821660  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  37821659 -ataaaatcattcttgat 37821643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 51737561 - 51737761
Alignment:
Q  42 cagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgtta 141  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||  || |||| |||||||| |||||||||    
T  51737561 cagaataatcacccttaaattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctgaccgaaaatcatggggtggtgggtgtta 51737660  T
Q  142 tgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattg 240  Q
    ||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| ||||||||||| |||    
T  51737661 tgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt-ataaaatcattcttg 51737759  T
Q  241 at 242  Q
    ||    
T  51737760 at 51737761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 41876461 - 41876251
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||||||||||||  |||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||||||||    
T  41876461 aatgacatggcagaataatcacccttaggttttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtg 41876362  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | ||| |||| |||||||||| |||||| |||||    
T  41876361 gtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgctatgtcattcttgaatttttctt-ataaa 41876263  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  41876262 atcattcttgat 41876251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 9910318 - 9910100
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||   ||| ||||||| ||    
T  9910318 ttcaagaatgacatggcagaataatcaaccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtatggccggaaatcat 9910219  T
Q  126 ggggtgatgggtgttatgta---nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttc 222  Q
    |||||| ||||||||||| |            |||| || |||||||||||| || ||||| || |||| ||| | |||||||| |||||||||| ||||    
T  9910218 ggggtggtgggtgttatgcatcttttttttttatgaaagattaataaataagtctgaaatctaaaggtgattattgtgccatgtcattcttgaatttttc 9910119  T
Q  223 ttgataaaatcattattgat 242  Q
    || ||||||||||| |||||    
T  9910118 tt-ataaaatcattcttgat 9910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 18404488 - 18404601
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||||  |||||||||||| ||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||   ||||||||||| || |||||    
T  18404488 aatgacatggtagaataatcacctttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagtttggtcggaaatcatagggtg 18404587  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  18404588 gtgggtgttatgta 18404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 33786660 - 33786543
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||   | || ||||||| ||    
T  33786660 ttcaagaatgacatggcacaataatcacccttaaattttatcaagaaattgtactgaaattaatgttagccaataaaatctctgtcgggccggaaatcat 33786561  T
Q  126 ggggtgatgggtgttatg 143  Q
    |||||| ||| |||||||    
T  33786560 ggggtggtggatgttatg 33786543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 32000292 - 32000173
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||   ||||||||||||||||| ||||||||    |  | ||||||| ||    
T  32000292 ttcaagaatgacatgacagaataaccacccttagattttatcaagaaattgtactgaaattaatgttagccaataaaatctatgtcgagccggaaatcat 32000193  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  32000192 ggggtggtgggtgttatgta 32000173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 40273742 - 40273861
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || |||||||||||||| ||||||| ||||||||||   ||||||||||||||||| |||||||||   | || ||||||| ||    
T  40273742 ttcaagaatgacatgtcaaaataatcacccttagattttattaagaaattgtactgaaattaatgttagccaataaaatctctgtcgggccggaaatcat 40273841  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  40273842 ggggtggtgggtgttatgta 40273861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 16045823 - 16045746
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaa 103  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||| |||||    
T  16045823 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatattcttgaaattaatgttagccaataaaa 16045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 25973469 - 25973663
Alignment:
Q  42 cagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgtta 141  Q
    ||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| ||||||||    |||| || |||| |||||||| |||||||||    
T  25973469 cagaataatcacccttagattttatcaagaaataatcctgaaattaatgttagccaataaaatct----ctggccgaaaatcatggggtggtgggtgtta 25973564  T
Q  142 tgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattga 241  Q
    ||||         |||| || ||||||||| ||||| ||||  || |||| ||| | || ||||| |||||||||| |||||| ||||||||||| ||||    
T  25973565 tgta-ttttttttatgaaagattaataaatgagactgaaatttaaaggtgattattgtgtcatgtcattcttgaatttttctt-ataaaatcattcttga 25973662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 242
Target Start/End: Complemental strand, 20305122 - 20304939
Alignment:
Q  60 attttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta--nnnnnnnnnatg 157  Q
    |||||||||||||||  ||  ||||||||||||||||| |||||||||| | ||| || |||| ||||| || |||||||||||||           |||    
T  20305122 attttatcaagaaataatcctgaaattaatgttagccaataaaatctcagcttggccgaaaatcatgggatggtgggtgttatgtatttttttttttatg 20305023  T
Q  158 ataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    | || || |||||| ||||| ||||| || |||| ||| | |||||||| ||||||||||||||||| ||||||||||| |||||    
T  20305022 aaagattgataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgat 20304939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 32000151 - 32000086
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||||||||||||||||    
T  32000151 aataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttcttgataaa 32000086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 33786516 - 33786451
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||||||||||||||||    
T  33786516 aataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttcttgataaa 33786451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 10167446 - 10167518
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaat 104  Q
    |||||||||| ||||||||||   ||| |||||||||| |||||||||  |||||||||||||||| ||||||    
T  10167446 aatgacatgatagaataatcatttttagattttatcaaaaaattgtctttaaattaatgttagccaataaaat 10167518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 16045784 - 16045849
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  16045784 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 16045849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 32000253 - 32000318
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||| ||||| |||||||||| |||||||| |||||| || |||||    
T  32000253 taaaatctaagggtggttattctgtcatgtcattcttgaatttttcttgagaaaatctttcttgat 32000318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 40215067 - 40215002
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  40215067 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 40215002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 40273888 - 40273953
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||| ||||||||||||    
T  40273888 aataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatatttcttgataaa 40273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 52064431 - 52064386
Alignment:
Q  197 tctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  52064431 tctgtcatgtcattcttgaatctttcttgataaaatcatttttgat 52064386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 34519798 - 34519874
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaa 102  Q
    |||||||||| |||   |||||||||  ||||| |||||||||| ||||||||  ||||||||||||||||| ||||    
T  34519798 ttcaaaaatgccatagaagaataatcgaccttagattttatcaaaaaattgtcctgaaattaatgttagccaataaa 34519874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 44094777 - 44094722
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||    
T  44094777 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaat 44094722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 7335449 - 7335519
Alignment:
Q  61 ttttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||| ||||| |||||||||||||  ||||||| |||||||||    ||| ||||||||||||||||    
T  7335449 ttttatcacgaaatagtctcgaaattaaaattagccaataaaatctctgtatggccggaaattatggggtg 7335519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 33786629 - 33786674
Alignment:
Q  185 aagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||| | |||||||| |||||||||||||||||||||||    
T  33786629 aagggtgattattgtgccatgtcattcttgaatctttcttgataaa 33786674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 51621004 - 51621085
Alignment:
Q  60 attttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta 145  Q
    ||||||| ||||||| |||  |||||||||||||| || ||||||||||    | |||||||| |||||||| ||| |||||||||    
T  51621004 attttattaagaaatagtccagaaattaatgttagtcaataaaatctca----gatcggaaatcatggggtggtggatgttatgta 51621085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 52329452 - 52329508
Alignment:
Q  162 gttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatc 218  Q
    |||||||| ||||||| ||||| ||||||| ||| ||||| |||| |||||||||||    
T  52329452 gttaataattaagactgaaatctaagggtgattattctgctatgtcattcttgaatc 52329508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 45)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 24844883 - 24844669
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||| ||    
T  24844883 ttcaagaatgacatgaca-aataatcacccttagattttatcaagaaattgtcccgaaattaatgttagccaataaaatctcatcctgattggaaatcat 24844785  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
     ||||| |||||||||||||         |||| |||||||||| ||||| ||||||| ||| ||| ||| | |||||||  |||||| |||||||||||    
T  24844784 agggtggtgggtgttatgta-ttttttttatgaaaggttaataattaagattaaaatctaagagtgattattttgccatgccattcttaaatctttcttg 24844686  T
Q  226 ataaaatcattattgat 242  Q
    |||||||||||||||||    
T  24844685 ataaaatcattattgat 24844669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 34665422 - 34665637
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| | ||| || |||| ||    
T  34665422 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcttggccgaaaatcat 34665521  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    || ||| |||||||||||||         |||| |||||||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||||||||||     
T  34665522 ggagtggtgggtgttatgtatttttttttatgaaaggttaataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttctt- 34665620  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  34665621 ataaaatcattcttgat 34665637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 20091826 - 20091610
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||| | ||||||| ||    
T  20091826 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatcgtcctgaaattaatgttagccaataaaatctcagcctagccggaaatcat 20091727  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| |||||||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||||||||||    
T  20091726 ggggtggtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttctt 20091627  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  20091626 -ataaaatcattcttgat 20091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 3890641 - 3890423
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||  | |||| ||    
T  3890641 ttcaagaatgacatggcagaataatcacc-ttagattttatcaagaaattgtctcgaaattaatgttagccaataaaatctcatcatggctgaaaatcat 3890543  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgat--aggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttc 222  Q
    |||||| |||||||||||||          |  ||  |||||||||||||||| ||||||| || |||| ||| |||||||| | |||||||||||||||    
T  3890542 ggggtggtgggtgttatgtattttttttataaaattaaggttaataaataagattaaaatctaatggtgattattctgccatatcattcttgaatctttc 3890443  T
Q  223 ttgataaaatcattattgat 242  Q
    |||||||||||||| |||||    
T  3890442 ttgataaaatcattcttgat 3890423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 37986074 - 37985865
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  |||||||||| |||||| ||||||||||  |||| ||||||| ||||||||    
T  37986074 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgctagccaataaaatctcagtctggccggaaatcatggggtg 37985975  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
     |||||||||||||         |||| || |||||||||  |||| ||||| || |||| ||| | |||||||| ||||||||||||||||| ||||||    
T  37985974 gtgggtgttatgtatttttttttatgaaagattaataaatgggactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ataaaa 37985876  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  37985875 tcattcttgat 37985865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 17841875 - 17841659
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  17841875 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 17841776  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  17841775 ggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 17841676  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  17841675 -ataaaatcattcttgat 17841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 1645981 - 1645773
Alignment:
Q  35 gacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatg 134  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||| | |||||||||| ||||||||||||| |||||||| ||    
T  1645981 gacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagctaataaaatctcagcctggtcggaaatcatggggtggtg 1645882  T
Q  135 ggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    |||||||||||           |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||  |||||||| |||||||    
T  1645881 ggtgttatgtatttttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttggttctttctt-ataaaat 1645783  T
Q  233 cattattgat 242  Q
    |||| |||||    
T  1645782 cattcttgat 1645773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 24211578 - 24211459
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  24211578 ttcaagaatggcatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 24211479  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  24211478 ggggtggtgggtgttatgta 24211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 40780154 - 40779938
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  40780154 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 40780055  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| ||| |||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  40780054 ggggtggtggatgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 40779955  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  40779954 -ataaaatcattcttgat 40779938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 6108252 - 6108042
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  6108252 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 6108153  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | || ||||| |||||||||| |||||| |||||    
T  6108152 gtgggtgttatgtatcttctttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgtcatgtcattcttgaatttttctt-ataaa 6108054  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  6108053 atcattcttgat 6108042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 15187600 - 15187816
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctc-atcctggtcggaaatta 124  Q
    ||||| ||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||| | ||||| ||||||| |    
T  15187600 ttcaagaatgatatggcagaataattacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctctagcctggccggaaatca 15187699  T
Q  125 tggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||| ||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | ||| |||| ||||||| |||||||||    
T  15187700 tggagtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgctatgtcattcttggatctttctt 15187799  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  15187800 -ataaaatcattcttgat 15187816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 8453874 - 8454065
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||| |||  ||||||||||| |  || |||||||||| ||||| ||||||||||    
T  8453874 ttcaagaatgacatgacaaaataatcacccttagattttatcaagaaatagtcctgaaattaatgtaacacaataaaatctcagcctggccggaaattat 8453973  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaat 217  Q
    || ||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||||||    
T  8453974 ggtgtggtgggtgttatgtatctttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaat 8454065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 30835072 - 30834864
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||  |||||||||||||||||||  |||||||||||||| || ||||||||||        |||||| ||    
T  30835072 ttcaagaatgacatggcagaataatcaccctttgattttatcaagaaattgtcctgaaattaatgttagtcaataaaatctca--------ggaaatcat 30834981  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         || | | ||| | |||||| ||| ||||| ||||||||||| |||| ||||| |||||| |||||||||||    
T  30834980 ggggtggtgggtgttatgtattttattttatcaaaagttgaaaaataacactgaaatctaagggtggttattctgtcatgtcattctttaatctttcttg 30834881  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  30834880 ataaaatcattcttgat 30834864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 26042141 - 26041922
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaatttt---atcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaat 122  Q
    ||||| ||||||||||||||||||||||||||| |||||   |||||||||| |||  ||||||||||||| ||| |||||||||| ||||  |||||||    
T  26042141 ttcaagaatgacatgacagaataatcacccttagatttttttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctgaccggaaat 26042042  T
Q  123 tatggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatcttt 221  Q
     |||||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||    
T  26042041 catggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaattttt 26041942  T
Q  222 cttgataaaatcattattgat 242  Q
    ||| ||||||||||| |||||    
T  26041941 ctt-ataaaatcattcttgat 26041922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 27782142 - 27782027
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |  |||| ||||||| ||    
T  27782142 ttcaataatgacatggcagaataatcacccttagattttatcaagaaattgtcttgaaattaatgttagccaataaaatcttagtctggccggaaatcat 27782043  T
Q  126 ggggtgatgggtgtta 141  Q
     ||||| |||||||||    
T  27782042 tgggtggtgggtgtta 27782027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 32393904 - 32394017
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||  || | || |||| ||||||||    
T  32393904 aatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagtctagccgaaaatcatggggtg 32394003  T
Q  132 atgggtgttatgta 145  Q
     | |||||||||||    
T  32394004 gtaggtgttatgta 32394017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 41819797 - 41819684
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| || || ||||||| ||||||||    
T  41819797 aatgatatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcccggccggaaatcatggggtg 41819698  T
Q  132 atgggtgttatgta 145  Q
     || ||||||||||    
T  41819697 gtgtgtgttatgta 41819684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 10044390 - 10044502
Alignment:
Q  33 atgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtga 132  Q
    |||||||||||||||||||| ||||||||||||||||||||| || | | ||||||||||||||| ||||||||||  |||||||||||| |||| |||     
T  10044390 atgacatgacagaataatcatccttaaattttatcaagaaatagttttggaattaatgttagccaataaaatctcaatctggtcggaaatcatggagtgg 10044489  T
Q  133 tgggtgttatgta 145  Q
    ||| |||||||||    
T  10044490 tggttgttatgta 10044502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 35353087 - 35353297
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| |||||||||||||||  ||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||| ||||    
T  35353087 aatgacatggcagaataatcacccttagattttatcaagaaataatcatgaaattaatgttaaccaataaaatctcagcctggccggaaatcatgaggtg 35353186  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||| ||||||  || |||| ||| | |||||||| |||||||||| |||||| |||||    
T  35353187 gtgggtgttatgtatcttttttttatgaaagattaataaatgagattaaaatttaaaggtgattattgtgccatgtcattcttgaatttttctt-ataaa 35353285  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  35353286 atcattcttgat 35353297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 3597066 - 3596947
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||  ||||||| ||    
T  3597066 ttcaagaatgacatggcagaataattacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctgaccggaaatcat 3596967  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  3596966 ggggtggtgggtgttatgta 3596947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 32064785 - 32064904
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||  |   ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  32064785 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaataattctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 32064884  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| ||||||||||||||||    
T  32064885 gggctgatgggtgttatgta 32064904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 42755067 - 42754948
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  42755067 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcatgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 42754968  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| || |||||||||||||    
T  42754967 gggatggtgggtgttatgta 42754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 14128910 - 14129115
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||     | || |||| || |||||    
T  14128910 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctca-----gccgaaaatcatagggtg 14129004  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| |||||    
T  14129005 gtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatatttctt-ataaa 14129103  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  14129104 atcattcttgat 14129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 7022018 - 7022137
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||||||    | || ||||||| ||    
T  7022018 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaattgtaccgaaattaatgttagccaataaaatctatgtcgggccggaaatcat 7022117  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  7022118 ggggtggtgggtgttatgta 7022137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 25581264 - 25581145
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || |||||||||| ||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||  ||||||| ||    
T  25581264 ttcaagaatgacatggcaaaataatcacctttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctgaccggaaatcat 25581165  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  25581164 ggggtggtgggtgttatgta 25581145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 31347807 - 31347688
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||   | || | ||||| ||    
T  31347807 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctctgtcgggccagaaatcat 31347708  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||  |||||||||||||    
T  31347707 ggggtagtgggtgttatgta 31347688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 39772826 - 39772708
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||| |||||||||| ||  | ||||||| ||    
T  39772826 ttcaagaatgacatggcagaataatcacccttagattttatcaaaaaatagtcttgaaattaatgttagccaataaaatctcagcc-agccggaaatcat 39772728  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| || |||||||||||||    
T  39772727 gggatggtgggtgttatgta 39772708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 7017890 - 7017771
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||    |||||||||||||||| |||||||||   | || ||||||| ||    
T  7017890 ttcaagaatgacatggcagaataatcatccttagattttatcaagaaattgtactaaaattaatgttagccaataaaatctctgtcgggccggaaatcat 7017791  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  7017790 ggggtggtgggtgttatgta 7017771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 27835478 - 27835359
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||  | |||||||| ||||| ||||||| || |||||||||  |||||||||||||||| |||||||||| ||| | ||||||| ||    
T  27835478 ttcaagaatgacatggtaaaataatcatccttagattttattaaaaaattgtcttcaaattaatgttagccaataaaatctcagcctagacggaaatcat 27835379  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| || |||||||||||||    
T  27835378 gggatggtgggtgttatgta 27835359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 15972896 - 15972822
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatct 106  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||   ||| ||||||||||||| ||||||||    
T  15972896 aatgacatgacagaataatcacccttagattttatcaagaaattgttctgaatttaatgttagccaataaaatct 15972822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 30055615 - 30055766
Alignment:
Q  84 attaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgtannnnnnnnn-atgataggttaataaataagactaaaat 182  Q
    |||||||||||||| |||||||||| | ||| ||||||| |||||||| ||| |||||||||          |||| |||||||||||| ||||||||||    
T  30055615 attaatgttagccaataaaatctcagc-tggccggaaatcatggggtggtggatgttatgtattttttttttatgaaaggttaataaatgagactaaaat 30055713  T
Q  183 caaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcatt 236  Q
    | ||||||| ||| | || ||||| ||||||||||||||||| |||||||||||    
T  30055714 ctaagggtgattattgtgtcatgtcattcttgaatctttctt-ataaaatcatt 30055766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 37132571 - 37132489
Alignment:
Q  160 aggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||||||||||||||||| ||||| ||||||| ||| | || ||||| |||| |||||||||||||||||||||||| |||||    
T  37132571 aggttaataaataagactgaaatctaagggtgattattgtgtcatgtcattcatgaatctttcttgataaaatcattcttgat 37132489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 41819663 - 41819590
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
    ||||||||||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||||||||||    
T  41819663 atgataggttaataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttcttgata 41819590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 27782103 - 27782158
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    ||||||| ||||||| ||| |||||||||| ||| |||||||||||||||||||||    
T  27782103 taaaatctaagggtgattattctgccatgtcattattgaatctttcttgataaaat 27782158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 1886625 - 1886670
Alignment:
Q  197 tctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||    
T  1886625 tctgccacgtcattcttgaatctttcttgataaaatcattcttgat 1886670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 32064824 - 32064759
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  32064824 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 32064759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 34665461 - 34665396
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  34665461 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 34665396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 42755028 - 42755093
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  42755028 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 42755093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 10044518 - 10044604
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| || ||||||||| ||| | ||||| || |||| ||| | |||||||| ||||||||||||||||| ||||||||||| |||||    
T  10044518 atgaaagattaataaatgagattgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgat 10044604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 20091787 - 20091842
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||    
T  20091787 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaat 20091842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 31347659 - 31347596
Alignment:
Q  167 taaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||| ||||| ||||| || |||| ||| | |||||||| |||||||||||||||||||||||    
T  31347659 taaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttcttgataaa 31347596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 38017047 - 38016985
Alignment:
Q  180 aatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  38017047 aatccaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 38016985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 38017047 - 38017093
Alignment:
Q  99 taaaatctcatcctggtcggaaattatggggtgatgggtgttatgta 145  Q
    |||||||||| ||||| ||||||| |||||||| |||||||||||||    
T  38017047 taaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 38017093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 3817955 - 3817914
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatc 67  Q
    ||||| ||| ||||||||||||||||||||||| ||||||||    
T  3817955 ttcaagaattacatgacagaataatcacccttagattttatc 3817914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 30835033 - 30835097
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||||||||||| ||| |||||||||| |||||||||| ||| | ||||||||| || |||||    
T  30835033 taaaatcaaagggtgattattctgccatgtcattcttgaat-tttttcgataaaatctttcttgat 30835097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 18365598 - 18365383
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||| ||    
T  18365598 ttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcatcctggccggaaatcat 18365499  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||  |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | ||| |||| ||||||| |||||||||     
T  18365498 ggggtagtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgctatgtcattcttggatctttctt- 18365400  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  18365399 ataaaatcattcttgat 18365383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 18370862 - 18370647
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||| ||    
T  18370862 ttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcatcctggccggaaatcat 18370763  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||  |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | ||| |||| ||||||| |||||||||     
T  18370762 ggggtagtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgctatgtcattcttggatctttctt- 18370664  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  18370663 ataaaatcattcttgat 18370647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 17176046 - 17175830
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  17176046 ttcaagaatgacatgacagaataatcacccttagattttatcaagaaataatcatgaaattaatgttagccaataaaatctcagcctggccggaaatcat 17175947  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | | |||||| |||||||||||||||||    
T  17175946 ggggtggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtaccatgtcattcttgaatctttctt 17175847  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  17175846 -ataaaatcattcttgat 17175830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 17705484 - 17705278
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||||  |||| ||||||| ||||| ||    
T  17705484 aatgacatgacagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagtctggccggaaatcatgggatg 17705385  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
     |||||||||||||         |||| |||||||||||| ||||| ||||| || |||| ||| | || ||||| ||||||||||||||||| ||||||    
T  17705384 gtgggtgttatgta--attttttatgaaaggttaataaatgagactgaaatctaa-ggtgattattgtgtcatgtcattcttgaatctttctt-ataaaa 17705289  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  17705288 tcattcttgat 17705278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 28675188 - 28675404
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| | ||||||||||||||| |||||||||||||||||||  ||||||||||||||| | |||||||||| ||||| ||||||| ||    
T  28675188 ttcaagaatgacatgtcggaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagctaataaaatctcagcctggccggaaatcat 28675287  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||| ||||||||          |||| |||||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||||||    
T  28675288 ggggtggtgggggttatgtattttttatttatgaaaggttaataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttctt 28675387  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  28675388 -ataaaatcattcttgat 28675404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 32 - 235
Target Start/End: Complemental strand, 2309442 - 2309239
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||| |||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| | ||| ||||||| |||||||     
T  2309442 aatggcatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcttggccggaaatcatggggtt 2309343  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| |||||||||||| ||||| ||||| ||||||| ||| | |||||||| ||||||||||||||||| |||||    
T  2309342 gtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttctt-ataaa 2309244  T
Q  231 atcat 235  Q
    |||||    
T  2309243 atcat 2309239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 33696736 - 33696953
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  33696736 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 33696835  T
Q  126 ggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    |||||| |||||||||||||           |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| |||||||||    
T  33696836 ggggtggtgggtgttatgtaattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatctttct 33696935  T
Q  224 tgataaaatcattattgat 242  Q
    | ||||||||||| |||||    
T  33696936 t-ataaaatcattcttgat 33696953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 6031760 - 6031647
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||||| || ||||| ||||||| ||||||||    
T  6031760 aatgacatgacagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttaaccaataaaatcccagcctggccggaaatcatggggtg 6031661  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  6031660 gtgggtgttatgta 6031647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 9752270 - 9752151
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||| |||||||||||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  9752270 ttcaagaatgatatggcagaataatcacccttagattttattaagaaattgtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 9752171  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||||||||||||||||||||    
T  9752170 ggggtgatgggtgttatgta 9752151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 33695352 - 33695233
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  33695352 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 33695253  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  33695252 ggggtggtgggtgttatgta 33695233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 8515744 - 8515556
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||  || | |||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||| ||||||||    
T  8515744 aatgacatggcagaataatcacatttga-ttttatcaagaaattgtcccgaaattaatgttagccaataaaatctcagcctgatcggaaatcatggggtg 8515646  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatcttt 221  Q
     ||| |||||||||         |||| | |||||||||||||||| ||||| ||| ||| ||| ||| |||||| ||| || |||||||    
T  8515645 gtggatgttatgtatttttttttatgaaatgttaataaataagactgaaatctaagagtgattattctaccatgtcatttttaaatcttt 8515556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 23291103 - 23290990
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| |||||||||| ||||| | ||||| ||||||||    
T  23291103 aatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcagcctggccagaaatcatggggtg 23291004  T
Q  132 atgggtgttatgta 145  Q
    ||||||||||||||    
T  23291003 atgggtgttatgta 23290990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 25986970 - 25987089
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || ||||||||| |||||||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  25986970 ttcaagaatgacatggcaaaataatcactcttaaattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 25987069  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  25987070 ggggtggtgggtgttatgta 25987089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 11548613 - 11548495
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||   || |||||||||||||| |||||||||   | || ||||||| ||    
T  11548613 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgatattaatgttagccaataaaatctctgtcgggccggaaatcat 11548514  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  11548513 ggggtg-tgggtgttatgta 11548495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 6127321 - 6127435
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcg-aaattaatgttagccagtaaaatctcatcctggtcggaaattatggggt 130  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| | |||||||||||||||| |||||| |||   ||| | ||||| |||||||    
T  6127321 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaaattaatgttagccaataaaatatcagtttggccagaaatcatggggt 6127420  T
Q  131 gatgggtgttatgta 145  Q
    | |||||||||||||    
T  6127421 ggtgggtgttatgta 6127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 29693615 - 29693702
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| ||| |||||||||||||| ||||| ||||||  ||| |||||||||| |||||| |||||||||||||||||||||| |||||    
T  29693615 atgaaaggataataaataagactgaaatctaagggtcattattctgccatgtcattcttaaatctttcttgataaaatcattcttgat 29693702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 32702245 - 32702364
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||  ||||||||| ||| ||| |||||||| |  || | ||||||| ||    
T  32702245 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatattaaccaataaaatctgagtctagccggaaatcat 32702344  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| ||||| |||||||    
T  32702345 ggggtggtgggtcttatgta 32702364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 228
Target Start/End: Complemental strand, 18889595 - 18889466
Alignment:
Q  99 taaaatctcatcctggtcggaaattatggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatc 198  Q
    |||||||||| ||| | ||||||| |||||||| ||||| |||||||         |||| || ||||||||| ||||| ||||| || |||| ||| |     
T  18889595 taaaatctcagccttgccggaaatcatggggtggtgggttttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattg 18889496  T
Q  199 tgccatgtgattcttgaatctttcttgata 228  Q
    |||||||| ||||||||||| |||||||||    
T  18889495 tgccatgtcattcttgaatcattcttgata 18889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 11548474 - 11548409
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | |||||||| ||||||||||| |||||||||||    
T  11548474 aataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatcgttcttgataaa 11548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 33695313 - 33695378
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  33695313 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 33695378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 33696775 - 33696710
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  33696775 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 33696710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 6127354 - 6127289
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  6127354 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 6127289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 23291070 - 23291135
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  23291070 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 23291135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 9752231 - 9752283
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataa 229  Q
    ||||||| ||||||| ||| |||||||| | |||||||||| |||||||||||    
T  9752231 taaaatctaagggtgattattctgccatatcattcttgaatttttcttgataa 9752283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 3962025 - 3962234
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| | ||| ||||||| ||||||||    
T  3962025 aatgacatgacagaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcttggccggaaatcatggggtg 3962124  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
     |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||| || |||||| ||||||    
T  3962125 gtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttggatatttctt-ataaaa 3962223  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  3962224 tcattcttgat 3962234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 20010122 - 20009913
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||| |||||||||||||||||| |||||||||| ||||||||  ||||||||||||||||| |||||||||| ||||| ||||||||||    
T  20010122 ttcaagaatgacat-acagaataatcacccttagattttatcaaaaaattgtcctgaaattaatgttagccaataaaatctcaacctggccggaaattat 20010024  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    ||||| ||||||||||||||         || | |||||||||||| ||||||||||| |||  || ||| | || ||||| |||||||||||||| |||    
T  20010023 ggggttatgggtgttatgtattttttcttattaaaggttaataaatgagactaaaatctaagtatgattattgtgtcatgtcattcttgaatcttttttg 20009924  T
Q  226 ataaaatcatt 236  Q
    |||||||||||    
T  20009923 ataaaatcatt 20009913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 45637752 - 45637961
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  |||||||||| |||||| ||||||||||  |||| ||||||| ||    
T  45637752 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgctagccaataaaatctcagtctggccggaaatcat 45637851  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| ||| |||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||||||||||     
T  45637852 ggggtggtggatgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt- 45637950  T
Q  226 ataaaatcatt 236  Q
    |||||||||||    
T  45637951 ataaaatcatt 45637961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 4974760 - 4974544
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||  ||||||||||||||||| ||||||||||   ||| ||||||| ||    
T  4974760 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattatcctgaaattaatgttagccaataaaatctcagtttggccggaaatcat 4974661  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    | |||| |||||||||||||          |||| |||||||||||| ||||| ||||| ||||||| ||| | |||||||| |||||||||||||| ||    
T  4974660 gaggtggtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatcttt-tt 4974562  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  4974561 tataaaatcattcttgat 4974544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 42696129 - 42696340
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||  |||||||||||||| || |||||||||| ||||| ||||||| | ||||||    
T  42696129 aatgacatagcagaataatcacccttatattttatcaagaaattgtcctgaaattaatgttagtcaataaaatctcaacctggccggaaatcaaggggtg 42696228  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     ||| |||||||||          |||| | |||||||||| ||||| ||||| ||||||| ||| | | |||||| |||||||||| ||| ||||||||    
T  42696229 gtggatgttatgtattttttttttatgaaaagttaataaatgagactgaaatctaagggtgattattgtaccatgtcattcttgaattttttttgataaa 42696328  T
Q  231 atcattattgat 242  Q
    ||||||||||||    
T  42696329 atcattattgat 42696340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 48880952 - 48880833
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  48880952 ttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 48880853  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  48880852 ggggtggtgggtgttatgta 48880833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 42611851 - 42612067
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| |||  |||  ||||||| ||    
T  42611851 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatttcagtctgaccggaaatcat 42611950  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||||||||| ||||| || |||| ||| | |||||||| ||||||  |||||||||    
T  42611951 ggggtggtgggtgttatgtattttttttttatgaaagattaataaataagactgaaatctaaaggtgattattgtgccatgtcattcttagatctttctt 42612050  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  42612051 -ataaaatcattcttgat 42612067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 29737185 - 29737401
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||||  |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||| ||||  ||||||| |||||||     
T  29737185 aatgacatggtagaataatcacccttagattttattaagaaattgtcccgaaattaatgttagccaataaaatctcaacctgaccggaaatcatggggta 29737284  T
Q  132 atgggtgttatgta------nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
     |||| ||||||||               |||| |||||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||| |||||||||||    
T  29737285 gtgggagttatgtatttttttttctttctatgaaaggttaataaatgagactgaaatctaagggtgattattgtgacatgttattcttaaatctttcttg 29737384  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  29737385 ataaaatcattcttgat 29737401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 15329313 - 15329429
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || ||||||||||  |||| ||||||| ||    
T  15329313 ttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagtcaataaaatctcagactggccggaaatcat 15329412  T
Q  126 ggggtgatgggtgttat 142  Q
    |||||| || |||||||    
T  15329413 ggggtggtgagtgttat 15329429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 24395018 - 24395227
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||  ||| ||| |||||||||| |||| ||   ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  24395018 aatgacatggcagaataacaacctttagattttatcaaaaaatagttctgaaattaatgttagccaataaaatctcaacctggccggaaatcatggggtg 24395117  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
     |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||||||| || ||||||    
T  24395118 gtgggtgttatgtatttatttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatcttt-tttataaaa 24395216  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  24395217 tcattcttgat 24395227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 25167869 - 25167756
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| ||   ||||||||||||| ||| ||||||||||  |||| ||||||| ||||||||    
T  25167869 aatgacatggcagaataatcatccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtg 25167770  T
Q  132 atgggtgttatgta 145  Q
    ||||||||||||||    
T  25167769 atgggtgttatgta 25167756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 34482881 - 34482993
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||  |||| ||||||| || |||||    
T  34482881 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagtctggccggaaatcat-gggtg 34482979  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  34482980 gtgggtgttatgta 34482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 37477099 - 37476986
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||   ||||||||||||||||| |||||||||   | || ||||||| ||||||||    
T  37477099 aatgacatggcagaataatcatccttaaattttatcaagaaattgtactgaaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtg 37477000  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  37476999 gtgggtgttatgta 37476986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 15577875 - 15577756
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| | ||||||||||||  |||| ||||||||||||||||| || |||||||  |||| ||||||| ||    
T  15577875 ttcaagaatgacatggcagaataatcacccttagactttatcaagaaaaagtcttgaaattaatgttagccaatataatctcagtctggccggaaatcat 15577776  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| || |||||||||||||    
T  15577775 gggttggtgggtgttatgta 15577756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 18037024 - 18037137
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||   ||||||||||||||||| |||||||||   | || | ||||| ||||||||    
T  18037024 aatgacatggcagaataatcacccttaaattttatcaaaaaattgtactgaaattaatgttagccaataaaatctctgtcgggccagaaatcatggggtg 18037123  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  18037124 gtgggtgttatgta 18037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 35444598 - 35444714
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  35444598 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 35444697  T
Q  126 ggggtgatgggtgttat 142  Q
    ||| || ||||||||||    
T  35444698 gggatggtgggtgttat 35444714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 135
Target Start/End: Complemental strand, 40880816 - 40880708
Alignment:
Q  27 tcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatg 126  Q
    |||| ||||||||| ||||||||||| ||||||||||||| |||||||| ||  ||||||||||||||||| |||||||| | |||||||| |||| |||    
T  40880816 tcaagaatgacatggcagaataatcatccttaaattttatgaagaaattatcctgaaattaatgttagccaataaaatcttagcctggtcgaaaatcatg 40880717  T
Q  127 gggtgatgg 135  Q
    |||| ||||    
T  40880716 gggtcatgg 40880708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 30848615 - 30848728
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||| ||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||||| |     
T  30848615 aatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcatgggata 30848714  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  30848715 gtgggtgttatgta 30848728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 36790485 - 36790372
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||   ||||||||||||||||| ||||||||||  || | || || || | |||||    
T  36790485 aatgacatggcagaataattacccttaaattttatcaagaaattgttctgaaattaatgttagccaataaaatctcagtctagccgaaattttttgggtg 36790386  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  36790385 gtgggtgttatgta 36790372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 15238422 - 15238538
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||   |||||||||||||| || |||||||||   | || ||||||| ||    
T  15238422 ttcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtactgaaattaatgttagtcaataaaatctctgtcgggccggaaatcat 15238521  T
Q  126 ggggtgatgggtgttat 142  Q
    |||||| ||||||||||    
T  15238522 ggggtggtgggtgttat 15238538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 4974721 - 4974786
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  4974721 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 4974786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 42611890 - 42611825
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  42611890 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 42611825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 45637791 - 45637726
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  45637791 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 45637726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 34483008 - 34483094
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| || ||||||||| ||| | ||||| || |||| ||| | |||||||| ||||||||||||||||| ||||||||||| |||||    
T  34483008 atgaaagattaataaatgagattgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgat 34483094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 15329352 - 15329287
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||| ||||| |||||||||  ||||||||||||||| || |||||    
T  15329352 taaaatctaagggtgattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgat 15329287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 15577844 - 15577901
Alignment:
Q  185 aagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  15577844 aagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 15577901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 37476965 - 37476900
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | |||||||| ||| || ||||||||||||||||    
T  37476965 aataaatgagactgaaatctaagggtgattattgtgccatgtcattattaaatctttcttgataaa 37476900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 48880913 - 48880978
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||| ||||| |||||||||  ||||||||||||||| || |||||    
T  48880913 taaaatctaagggtgattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgat 48880978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 36790325 - 36790285
Alignment:
Q  202 catgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||| |||||||||||||| ||||||||| ||||||||||    
T  36790325 catgtcattcttgaatctttgttgataaaaccattattgat 36790285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 8145415 - 8145629
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||| |||||||||| ||||||||||||| ||    
T  8145415 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaactaatgttagccaataaaatctcagcctggtcggaaatcat 8145514  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
     ||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||||||||||     
T  8145515 -gggtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt- 8145612  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  8145613 ataaaatcattcttgat 8145629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 14138708 - 14138917
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||| ||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||| |||| |||||||| ||    
T  14138708 ttcaagaattacatggcagaataatcacccttaaattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctgatcggaaatcat 14138807  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||| | ||||| || |||| ||| | |||||||| |||||||||||||||||     
T  14138808 ggggtggtgggtgttatgtatttttttttatgaaagattaataaatgagattgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt- 14138906  T
Q  226 ataaaatcatt 236  Q
    |||||||||||    
T  14138907 ataaaatcatt 14138917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 26 - 228
Target Start/End: Complemental strand, 31640965 - 31640763
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| |||||||| |||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  31640965 ttcaagaatgacatggcagaataaccacccttagattttatcaagaaattgtcatgaaattaatgttagccaataaaatctcagcctggccggaaatcat 31640866  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| ||||||||||||||||    |||| || |  | ||| |||||||||| ||||||||||||||||||    
T  31640865 ggggtggtgggtgttatgtatttttttttatgaaaggttaataaataagatatcaatctaaagtcgattattctgccatgtcattcttgaatctttcttg 31640766  T
Q  226 ata 228  Q
    |||    
T  31640765 ata 31640763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 33584348 - 33584138
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  33584348 aatgacatggcagaataatcacccttaaattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 33584249  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| |||||    
T  33584248 gtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt-ataaa 33584150  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  33584149 atcattcttgat 33584138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 242
Target Start/End: Original strand, 12850843 - 12851058
Alignment:
Q  28 caaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatgg 127  Q
    ||||||||||||| |||||||| |||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||    
T  12850843 caaaaatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatgg 12850942  T
Q  128 ggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||| |||||||||||||           |||| || ||||||||| ||||| ||||| || |||||||| | |||||||| |||||||||| ||||||     
T  12850943 ggtggtgggtgttatgtattttcttttttatgaaagattaataaatgagactgaaatctaaaggtggttattgtgccatgtcattcttgaatttttctt- 12851041  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  12851042 ataaaatcattcttgat 12851058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 4892248 - 4892458
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  4892248 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 4892347  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| |||||    
T  4892348 gtgggtgttatgtatcttcttttaatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt-ataaa 4892446  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  4892447 atcattcttgat 4892458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 11361150 - 11361037
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  11361150 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcatggggtg 11361051  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  11361050 gtgggtgttatgta 11361037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 2477682 - 2477892
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || |||||| ||| ||||| ||||||| ||||||||    
T  2477682 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagtcaataaaatttcagcctggccggaaatcatggggtg 2477781  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||||||||| ||||| || |||| | | | |||||||| ||||||  ||||||||| |||||    
T  2477782 gtgggtgttatgtattttttttttatgaaagattaataaataagactgaaatctaaaggtgatcattgtgccatgtcattcttagatctttctt-ataaa 2477880  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  2477881 atcattcttgat 2477892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 25398284 - 25398494
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  25398284 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 25398383  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||| |||||| |||||| |||||    
T  25398384 gtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattgttgaatttttctt-ataaa 25398482  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  25398483 atcattcttgat 25398494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 37321812 - 37321602
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||||||||| ||||||||||  || | ||||||| ||||||||    
T  37321812 aatgacatggcagaataatcacccttaaattttatcaataaatagtcttgaaattaatgttagccaataaaatctcagtctagccggaaatcatggggtg 37321713  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||| | |||||||||| |||||| |||||    
T  37321712 gtgggtgttatgtattttttatttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatttcattcttgaatatttctt-ataaa 37321614  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  37321613 atcattcttgat 37321602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 6043536 - 6043321
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||  |||||||||||||||| ||||||||||||||| ||   ||||||||| ||| ||| |||||||||| ||||| ||||||| ||    
T  6043536 ttcaagaatgacatggaagaataatcacccttagattttatcaagaaatagtgctgaaattaatattaaccaataaaatctcagcctggccggaaatcat 6043437  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||     
T  6043436 ggggtgttgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt- 6043338  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  6043337 ataaaatcattcttgat 6043321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 230
Target Start/End: Complemental strand, 22913079 - 22912877
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||||||||   | || | ||||| ||    
T  22913079 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaattaatgttagccaataaaatctctgtcgggccagaaatcat 22912980  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| ||| |||||||||         |||| ||   ||||||| ||||| ||||| ||||||| ||| | |||||||| ||||||||||||||||||    
T  22912979 ggggtggtggatgttatgtatttttttttatgagag--aaataaatgagactgaaatctaagggtgattattgtgccatgtcattcttgaatctttcttg 22912882  T
Q  226 ataaa 230  Q
    |||||    
T  22912881 ataaa 22912877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 3522031 - 3521816
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||||||||| ||   ||||||||||||| ||| |||||||| |   ||| ||||||| ||    
T  3522031 ttcaaaaatgacatggcagaataatcaccattagattttatcaagaaatagttctgaaattaatgttaaccaataaaatcttagtttggccggaaatcat 3521932  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||     
T  3521931 ggggtggtgggtgttatgtatctttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt- 3521833  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  3521832 ataaaatcattcttgat 3521816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 38899745 - 38899534
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| || |||| ||||||||    
T  38899745 aatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccgaaaatcatggggtg 38899646  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||| ||          |||| || ||||||||| ||||| ||||| || |||||||| | |||||||| |||||||||| ||| || |||||    
T  38899645 gtgggtgttatatatcttttttttatgaaagattaataaatgagactgaaatctaaaggtggttattgtgccatgtcattcttgaatttttttttataaa 38899546  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  38899545 atcattcttgat 38899534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 3362824 - 3363035
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||||||||    
T  3362824 aatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtg 3362923  T
Q  132 atgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataa 229  Q
     |||||||||||||           |||| || ||||||||| ||||| ||||| || |||||||| | || ||||| |||||| ||| |||||| ||||    
T  3362924 gtgggtgttatgtatctttttttttatgaaagattaataaatgagactgaaatctaaaggtggttattgtgtcatgtcattcttaaatttttctt-ataa 3363022  T
Q  230 aatcattattgat 242  Q
    ||||||| |||||    
T  3363023 aatcattcttgat 3363035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 27481897 - 27482074
Alignment:
Q  61 ttttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta-nnnnnnnnnatgat 159  Q
    |||||| ||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||| |||||||| |||||||||||||          || |     
T  27481897 ttttatgaagaaattgtcacgaaattaatgttagccaataaaatttcatcctagtcggaaatcatggggtggtgggtgttatgtattttttttttataaa 27481996  T
Q  160 aggttaataaataagact-aaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcatt 236  Q
    |||||||||||||||| | |||||| || |||| ||| ||||  |||| |||||||||||||| ||||||||||||||    
T  27481997 aggttaataaataagattaaaaatctaaaggtgattattctgttatgtcattcttgaatcttttttgataaaatcatt 27482074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 4434032 - 4433845
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  4434032 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 4433933  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattctt 213  Q
    ||| || |||||||||||||         |||| || ||||||||||||||| ||||| || |||| ||| | |||||||| ||||||    
T  4433932 gggatggtgggtgttatgtatttttttttatgaaagattaataaataagactgaaatctaaaggtgattattgtgccatgtcattctt 4433845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 12614758 - 12614671
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctg 113  Q
    ||||| |||||||||||| |||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| ||||    
T  12614758 ttcaagaatgacatgacataataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcctg 12614671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 142
Target Start/End: Complemental strand, 17545710 - 17545594
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||   |||||||||||||| || |||||||||   | || ||||||| ||    
T  17545710 ttcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtactgaaattaatgttagtcaataaaatctctgtcgggccggaaatcat 17545611  T
Q  126 ggggtgatgggtgttat 142  Q
    |||||| ||||||||||    
T  17545610 ggggtggtgggtgttat 17545594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 31640926 - 31640977
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
    ||||||| ||||||||||| |||||||||| |||||||||||||||||||||    
T  31640926 taaaatctaagggtggttattctgccatgtcattcttgaatctttcttgata 31640977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 12614633 - 12614553
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcat 235  Q
    |||| |||||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||||||| |||||||||||||    
T  12614633 atgaaaggttaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatcttttttgataaaatcat 12614553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 36880293 - 36880229
Alignment:
Q  81 gaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta 145  Q
    ||||||||||||||||| |||||| |||  |||||||||||||||||| || ||| |||||||||    
T  36880293 gaaattaatgttagccaataaaatttcagtctggtcggaaattatgggatggtggatgttatgta 36880229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 3362857 - 3362792
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||||||||| ||||||| |  ||||||||||||||| || |||||    
T  3362857 taaaatctaagggtggttattctgccatgtcattcttggaattttcttgataaaatctttcttgat 3362792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 8145454 - 8145389
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  8145454 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 8145389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 38899712 - 38899777
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||||||||| ||||||| |  ||||||||||||||| || |||||    
T  38899712 taaaatctaagggtggttattctgccatgtcattcttggaattttcttgataaaatctttcttgat 38899777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 12614719 - 12614774
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    ||||||| ||||||| ||| | || ||||| |||||||||||||||||||||||||    
T  12614719 taaaatctaagggtgattattatgtcatgtcattcttgaatctttcttgataaaat 12614774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 2477715 - 2477650
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  2477715 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 2477650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 6043497 - 6043562
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| ||| |||||| |||||||||  ||||||||||||||| || |||||    
T  6043497 taaaatctaagggtgattattcttccatgtcattcttgaaattttcttgataaaatctttcttgat 6043562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 11361117 - 11361182
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  11361117 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 11361182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 12850880 - 12850815
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||||||||| ||| ||| |  ||||||||||||||| || |||||    
T  12850880 taaaatctaagggtggttattctgccatgtcatttttggaattttcttgataaaatctttcttgat 12850815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 14138739 - 14138682
Alignment:
Q  185 aagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  14138739 aagggtgattattctgccatgtaattcttgaaattttcttgataaaatctttcttgat 14138682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 33145758 - 33145968
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| ||||  ||||||||||| ||||    
T  33145758 aatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcctgaccggaaattatgaggtg 33145857  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||| ||||||          |||| |||||||||||||||||| ||||| ||||||| ||| | || ||||| ||||||||||||||||| |||||    
T  33145858 gtgggtggtatgtattttttttttatgaaaggttaataaataagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttctt-ataaa 33145956  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  33145957 atcattcttgat 33145968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 242
Target Start/End: Complemental strand, 22426366 - 22426154
Alignment:
Q  29 aaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggg 128  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||| |||  |||| ||||||| |||||    
T  22426366 aaaaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatttcagtctggccggaaatcatggg 22426267  T
Q  129 gtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
    ||| |||||||||||||         |||| || ||||||||| ||||| ||||| ||  ||| ||| | |||||||| ||||||||||||||||| |||    
T  22426266 gtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaatgtgattattgtgccatgtcattcttgaatctttctt-ata 22426168  T
Q  229 aaatcattattgat 242  Q
    |||||||| |||||    
T  22426167 aaatcattcttgat 22426154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 3137439 - 3137223
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  3137439 ttcaagaatgacatggcaaaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 3137340  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||||||||||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  3137339 ggggtgatgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 3137240  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  3137239 -ataaaatcattcttgat 3137223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 30385051 - 30385170
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  30385051 ttcaaaaatgacatggcagaataatcacccttatattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 30385150  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  30385151 ggggtggtgggtgttatgta 30385170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 241
Target Start/End: Complemental strand, 41883248 - 41883031
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||  ||||   ||||| ||    
T  41883248 ttcaagaatgacatggcagaataatcacccttaaattttatcaagaaattgtcccgaaattaatgttagtcaataaaatctcagactggctagaaatcat 41883149  T
Q  126 ggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    |||||| |||||||||||||           || | ||||| |||||||||||| ||||| || | || ||| | | |||||| ||||||||||||||||    
T  41883148 ggggtggtgggtgttatgtatttttttttttataaaaggttgataaataagactgaaatccaaagatgattattttaccatgtcattcttgaatctttct 41883049  T
Q  224 tgataaaatcattattga 241  Q
    | ||||||||||| ||||    
T  41883048 tcataaaatcatttttga 41883031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 242
Target Start/End: Original strand, 33839581 - 33839792
Alignment:
Q  36 acatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgg 135  Q
    ||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||||||| ||||||||||  |||| || |||| |||||||| | |    
T  33839581 acatgacagaataatcaccattagattttatcaagaaattgttttgaaattaatgttagccaataaaatctcaatctggccgtaaatcatggggtggtag 33839680  T
Q  136 gtgttatgta-----nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||||||              |||| |||||||||||| ||||| ||||  ||||||| ||| | || ||||| |||||||||||||||||||||||    
T  33839681 gtgttatgtattttttctttttttatgaaaggttaataaatgagactgaaatttaagggtgattattgtgtcatgtcattcttgaatctttcttgataaa 33839780  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  33839781 atcattcttgat 33839792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 37522099 - 37522309
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||| | ||||||| ||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||||||||||||    
T  37522099 aatgacatgacagaataatcaccctaagattttataaagaaatagtcatgaaattaatgttaaccaataaaatctcaacctggccggaaattatggggtg 37522198  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| |||||| |||||    
T  37522199 gtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattatgccatgtcattcttaaatttttctt-ataaa 37522297  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  37522298 atcattcttgat 37522309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 8320603 - 8320391
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat-ggggt 130  Q
    ||||| ||| || |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| | ||||| || |||||    
T  8320603 aatgatatggcaaaataatcacccttaaattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcctggccagaaatcatgggggt 8320504  T
Q  131 gatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
      |||||||||||||           |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||||||||||||| |||    
T  8320503 agtgggtgttatgtatttttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ata 8320405  T
Q  229 aaatcattattgat 242  Q
    ||||||||||||||    
T  8320404 aaatcattattgat 8320391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 6041924 - 6042133
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||  ||||||| ||    
T  6041924 ttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctgaccggaaatcat 6042023  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| ||| |||||| |          |||| |  ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||| |||||||||     
T  6042024 ggggtggtggttgttattt------ttttatgaaaaattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttggatctttctt- 6042116  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  6042117 ataaaatcattcttgat 6042133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 33113833 - 33114050
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||| ||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||| |||  |||| ||||||| ||    
T  33113833 ttcaagaattacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatttcagtctggccggaaatcat 33113932  T
Q  126 ggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    |||||| |||||||||||||           |||| || ||||||||| ||| | ||||| || |||| ||| | |||||||| ||||||||||||||||    
T  33113933 ggggtggtgggtgttatgtatttttttttttatgaaagattaataaatgagattgaaatctaaaggtgattattgtgccatgtcattcttgaatctttct 33114032  T
Q  224 tgataaaatcattattgat 242  Q
    | ||||||||||| |||||    
T  33114033 t-ataaaatcattcttgat 33114050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 3574546 - 3574432
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaa-ttaatgttagccagtaaaatctcatcctggtcggaaattatggggt 130  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||||| |||||||||| | ||| ||||||| |||||||    
T  3574546 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaaattaatgttagccaataaaatctcagcttggccggaaatcatggggt 3574447  T
Q  131 gatgggtgttatgta 145  Q
    | |||||||||||||    
T  3574446 ggtgggtgttatgta 3574432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 242
Target Start/End: Original strand, 24343603 - 24343806
Alignment:
Q  42 cagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgtta 141  Q
    |||||||||||| |||| ||||||||||||||||||  |||||||||||||||||| |||||||||||||||  || |||| || ||||| |||||||||    
T  24343603 cagaataatcactcttagattttatcaagaaattgttccgaaattaatgttagccaataaaatctcatcctgaccgaaaatcatcgggtggtgggtgtta 24343702  T
Q  142 tgta---nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattat 238  Q
    ||||             ||| |||||||||||||||||| ||||| ||||||| |||   |  ||||| |||||||||||||| |||||||||||||| |    
T  24343703 tgtattttttttttttttgaaaggttaataaataagactgaaatctaagggtgattatcatatcatgtcattcttgaatcttttttgataaaatcattct 24343802  T
Q  239 tgat 242  Q
    ||||    
T  24343803 tgat 24343806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 3089463 - 3089576
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||| |||||||||| | ||| ||||||| ||||||||    
T  3089463 aatgacatggcagaataatcacccttagattttatcaagaaatattcttgaaattaatgttagccaataaaatctcagcttggccggaaatcatggggtg 3089562  T
Q  132 atgggtgttatgta 145  Q
     |||||| ||||||    
T  3089563 gtgggtgctatgta 3089576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 19650919 - 19650709
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaa-ttaatgttagccagtaaaatctcatcctggtcggaaattatggggt 130  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||  |||| |||| ||||||||||||  |||||||||| | ||| ||||||| |||||||    
T  19650919 aatgacatggcagaataatcaccattagattttatcaagaaacagtcttgaaaattaatgttagccgataaaatctcagcttggccggaaatcatggggt 19650820  T
Q  131 gatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    | |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | || ||||| ||||||| ||||||||| |||||    
T  19650819 ggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgtcatgtcattcttggatctttctt-ataaa 19650721  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  19650720 atcattcttgat 19650709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 37217072 - 37216862
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||| |  | |||| || |||||    
T  37217072 aatgacatggcagaataatcacccttaaattttatcaagaaatagtcatgaaattaatgttaaccaataaaatctcagccttgctgaaaatcatagggtg 37216973  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | | |||||| ||||||||||||||||| |||||    
T  37216972 gtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtaccatgtcattcttgaatctttctt-ataaa 37216874  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  37216873 atcattcttgat 37216862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 42297909 - 42298092
Alignment:
Q  32 aatgacatga-cagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggt 130  Q
    |||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||  |||| ||||||| |||||||    
T  42297909 aatgacatgatcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagtctggccggaaatcatggggt 42298008  T
Q  131 gatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttga 215  Q
    | | | |||||||||         |||| |||||||||||| ||||| ||||| ||||||||||| | || ||||| ||||||||    
T  42298009 ggtagatgttatgta-ttttttttatgaaaggttaataaatgagactgaaatctaagggtggttattgtgtcatgtcattcttga 42298092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 47738145 - 47738368
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||| ||| ||| ||||||| || ||||||||  ||||||||||||||||| |||||||||| ||||  | ||||| ||    
T  47738145 ttcaagaatgatatggcagaataattacctttagattttataaaaaaattgtcctgaaattaatgttagccaataaaatctcagcctgaccagaaatcat 47738244  T
Q  126 ggggtgatgggtgttatgta-------nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatc 218  Q
    |||||| |||||||||||||                |||| |||||||||||| ||||| ||||| |||| || ||| | |||||||| |||||||||||    
T  47738245 ggggtggtgggtgttatgtatttttttttattttttatgaaaggttaataaatgagactgaaatctaaggatgattattgtgccatgtcattcttgaatc 47738344  T
Q  219 tttcttgataaaatcattattgat 242  Q
    |||||||||||||||||| |||||    
T  47738345 tttcttgataaaatcattcttgat 47738368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 48160951 - 48161064
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||| |||||||||| ||| | ||||||  ||||||||    
T  48160951 aatgatatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatattagccaataaaatctcagcctagccggaaaccatggggtg 48161050  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  48161051 gtgggtgttatgta 48161064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 3456110 - 3456320
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |||  | ||||||||||| ||| ||||||||||  |||| ||||||| ||||||||    
T  3456110 aatgatatggcagaataatcacccttagattttatcaagaaatagtcctggaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtg 3456209  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || | || ||| | || ||||| ||||||||||||||||| |||||    
T  3456210 gtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaagatgattagtgtgtcatgtcattcttgaatctttctt-ataaa 3456308  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  3456309 atcattcttgat 3456320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 60 - 242
Target Start/End: Original strand, 40327899 - 40328088
Alignment:
Q  60 attttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta-------nnnnnnn 152  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||||| ||||| ||||||| || ||||| |||||||||||||                  
T  40327899 attttatcaagaaattgtcctgaaattaatgttagccaataaaatctcaacctggccggaaatcatagggtggtgggtgttatgtattttatttttattt 40327998  T
Q  153 nnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
      || | |||| ||||||||||||| ||||| ||||||| ||| | || ||||| ||||||||||||||||||||||||||||| |||||    
T  40327999 ttatcaaaggtaaataaataagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgat 40328088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 8362070 - 8361951
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||||||||   | || ||||||| ||    
T  8362070 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaattaatgttagccaataaaatctctgtcgggccggaaatcat 8361971  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| ||||||| |||||    
T  8361970 ggggtggtgggtgtcatgta 8361951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 42297399 - 42297513
Alignment:
Q  32 aatgacatgac-agaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggt 130  Q
    ||||||||||| |||||||||||||||| ||||||||||||||| ||   ||||||||||||||||| |||||||||| ||||  ||||||| |||||||    
T  42297399 aatgacatgactagaataatcacccttagattttatcaagaaatagttctgaaattaatgttagccaataaaatctcagcctgaccggaaatcatggggt 42297498  T
Q  131 gatgggtgttatgta 145  Q
    | ||| |||||||||    
T  42297499 ggtggatgttatgta 42297513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 2754763 - 2754876
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||  ||||||| |||||||     
T  2754763 aatgacatggcagaataatcacctttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggta 2754862  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  2754863 gtgggtgttatgta 2754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 242
Target Start/End: Complemental strand, 36865046 - 36864841
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||||  ||||||||||||||||  ||||||||| |||| |||  ||||||||||||||||| || |||||||    || ||||||| ||||| ||    
T  36865046 aatgacatggtagaataatcacccttaggttttatcaaaaaatagtcctgaaattaatgttagccaatagaatctca----ggccggaaatcatgggatg 36864951  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
     |||||||||||||         |||| | |||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||| |||||||||    
T  36864950 gtgggtgttatgtattttttat-atgaaatgttaataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatcttttttgataaaa 36864852  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  36864851 tcattcttgat 36864841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 242
Target Start/End: Original strand, 46918945 - 46919151
Alignment:
Q  29 aaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggg 128  Q
    |||||||| |||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||||| | |||||| |     |||  |||||| |||||    
T  46918945 aaaaatgatatgatagaataattacctttagattttatcaagaaattgtctcgaaattaatgttagcaaataaaatgt-----tggctggaaatcatggg 46919039  T
Q  129 gtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
    ||| ||| |||||| ||         ||||||| ||||||||||||||  ||||| |  |||| ||| |||||||||| ||| |||||||||| ||||||    
T  46919040 gtggtggatgttatata--tatatttatgatagattaataaataagaccgaaatctagaggtgattattctgccatgtcattattgaatcttttttgata 46919137  T
Q  229 aaatcattattgat 242  Q
    |||||||| |||||    
T  46919138 aaatcattcttgat 46919151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 34482935 - 34482824
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| |||  |||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  34482935 ttcaagaatgatatggtagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 34482836  T
Q  126 ggggtgatgggt 137  Q
    |||||| |||||    
T  34482835 ggggtggtgggt 34482824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 26612916 - 26613003
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| |||||||||||| ||||| ||||| ||||||| ||| | |||||||| ||||||||||||||||| |||||||||||||||||    
T  26612916 atgaaaggttaataaatgagactgaaatctaagggtgattattgtgccatgttattcttgaatctttcttaataaaatcattattgat 26613003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 41224273 - 41224392
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||  ||||| ||||||||| |||||||| |||||||||| | ||||||||||||||| | |||||||||     |||||||||| ||    
T  41224273 ttcaagaatgacatggtagaattatcacccttgaattttattaagaaattgtattgaaattaatgttagctaataaaatctctgttgggtcggaaatcat 41224372  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  41224373 ggggtggtgggtgttatgta 41224392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 11347314 - 11347427
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||| ||||||| ||||||||| ||||| |||  ||||||||||||||||| ||||||||||   |||   ||||| ||||||||    
T  11347314 aatgacatggcagaataataacccttagattttatcaggaaatagtcctgaaattaatgttagccaataaaatctcagagtggctagaaatcatggggtg 11347413  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  11347414 gtgggtgttatgta 11347427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 9797054 - 9796935
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||||    |||||||||||||||| |||||||||   | || || |||| ||    
T  9797054 ttcaagaatgacatggcagaataatcaccattagattttatcaagaaattgtacttaaattaatgttagccaataaaatctctgtcgggccgaaaatcat 9796955  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| ||||| |||||||    
T  9796954 ggggtggtgggtcttatgta 9796935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 242
Target Start/End: Original strand, 30385525 - 30385656
Alignment:
Q  110 cctggtcggaaattatggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgat 209  Q
    ||||| ||||||| |||||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||    
T  30385525 cctggccggaaatcatggggtggtgggtgttatgtatttatttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcat 30385624  T
Q  210 tcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||||||||||| ||||||||||| |||||    
T  30385625 tcttgaatctttctt-ataaaatcattcttgat 30385656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 42921189 - 42921265
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctca 108  Q
    ||||||||||| |||| ||  || ||| |||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  42921189 aatgacatgaccgaatgattgcctttagattttatcaagaaattgtcctgaatttaatgttagccaataaaatctca 42921265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 42921295 - 42921376
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcatt 236  Q
    |||| |||||||||||| ||||| ||||  ||||||| ||  | |||||||| |||||| ||| ||||||||||||||||||    
T  42921295 atgaaaggttaataaatgagactgaaatttaagggtgattgttgtgccatgtcattcttaaatatttcttgataaaatcatt 42921376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 3574513 - 3574578
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  3574513 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 3574578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 6041963 - 6041898
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||| ||||| |||||||||  ||||||||||||||| || |||||    
T  6041963 taaaatctaagggtgattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgat 6041898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 8361924 - 8361859
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||| ||||||||||||    
T  8361924 aataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatatttcttgataaa 8361859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 9796914 - 9796849
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| ||| ||| ||| | || ||||| |||||||||||||||||||||||    
T  9796914 aataaatgagactgaaatctaagagtgattattgtgacatgtcattcttgaatctttcttgataaa 9796849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 33839766 - 33839729
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattt 63  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  33839766 ttcaagaatgacatgacacaataatcacccttaaattt 33839729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 9293601 - 9293384
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  9293601 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 9293502  T
Q  126 ggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    |||||| |||||||||||||           |||| || ||||||||| ||||| ||||| ||||||| ||| | || ||||| ||||||||||||||||    
T  9293501 ggggtggtgggtgttatgtatttttttttttatgaaagattaataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttct 9293402  T
Q  224 tgataaaatcattattgat 242  Q
    | ||||||||||| |||||    
T  9293401 t-ataaaatcattcttgat 9293384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 9723451 - 9723663
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||   ||||||| ||||||||    
T  9723451 aatgacatgacagaataatcacccttaaattttatcaagaaattgtcccgaaattaatgttagctaataaaatctcagcctcaccggaaatcatggggtg 9723550  T
Q  132 atgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataa 229  Q
     |||||||||||||           |||| | || ||||||||||||| ||||| || |||| ||| |||| ||||| |||||| ||| ||||||||| |    
T  9723551 gtgggtgttatgtatttttttttttatgaaaagtgaataaataagactgaaatctaaaggtgattattctgtcatgtcattcttaaatatttcttgatca 9723650  T
Q  230 aatcattattgat 242  Q
    ||||||| |||||    
T  9723651 aatcattcttgat 9723663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 3989122 - 3989235
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||  |||| ||||||| ||||||||    
T  3989122 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagtctggccggaaatcatggggtg 3989221  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  3989222 gtgggtgttatgta 3989235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 31174859 - 31174644
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| ||||||||||  |||  ||||||| ||    
T  31174859 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagtctgaccggaaatcat 31174760  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||| | ||||| || || | ||| | || ||||| |||||||||||||||||     
T  31174759 ggggtggtgggtgttatgtatttttttttatgaaagattaataaatgagattgaaatctaaaggagtttattgtgtcatgtcattcttgaatctttctt- 31174661  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  31174660 ataaaatcattcttgat 31174644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 33380253 - 33380463
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| | ||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  33380253 aatgacatggctgaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 33380352  T
Q  132 atgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
     |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| |||||    
T  33380353 gtgggtgttatgtatctttttttaatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt-ataaa 33380451  T
Q  231 atcattattgat 242  Q
    |||||| |||||    
T  33380452 atcattcttgat 33380463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 35160803 - 35161015
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  35160803 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 35160902  T
Q  132 atgggtgttatgta---nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgata 228  Q
     |||||||||||||            |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||| |||    
T  35160903 gtgggtgttatgtatcttttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt-ata 35161001  T
Q  229 aaatcattattgat 242  Q
    |||||||| |||||    
T  35161002 aaatcattcttgat 35161015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 7475533 - 7475414
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| |||||||||| |||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  7475533 ttcaagaatgacatgatagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 7475434  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  7475433 ggggtggtgggtgttatgta 7475414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 23268087 - 23267871
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  23268087 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 23267988  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||    
T  23267987 ggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt 23267888  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  23267887 -ataaaatcattcttgat 23267871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 21936121 - 21936241
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctc-atcctggtcggaaatta 124  Q
    ||||| ||||| ||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||| | ||||| ||||||| |    
T  21936121 ttcaagaatgatatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctctagcctggccggaaatca 21936220  T
Q  125 tggggtgatgggtgttatgta 145  Q
    ||||||| |||||||||||||    
T  21936221 tggggtggtgggtgttatgta 21936241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 10661933 - 10662144
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| || |||||    
T  10661933 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcatagggtg 10662032  T
Q  132 atgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataa 229  Q
     |||||||||||||           |||| || ||||||||| ||||| ||||| || |||| ||| | || ||||| |||||||||| |||||| ||||    
T  10662033 gtgggtgttatgtatctttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgtcatgtcattcttgaatttttctt-ataa 10662131  T
Q  230 aatcattattgat 242  Q
    ||||||| |||||    
T  10662132 aatcattcttgat 10662144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 14941391 - 14941273
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| | |||||||| ||||| | ||||| ||    
T  14941391 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaat-aaatctcagcctggccagaaatcat 14941293  T
Q  126 ggggtgatgggtgttatgta 145  Q
    | |||| |||||||||||||    
T  14941292 gaggtggtgggtgttatgta 14941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 27847672 - 27847791
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||| ||||||||  |||||||||||||| || |||||||||| ||||  | ||||| ||    
T  27847672 ttcaagaatgacatgacagaataatcaccgttagattttatcaaaaaattgtcctgaaattaatgttagtcaataaaatctcagcctgaccagaaatcat 27847771  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  27847772 ggggtggtgggtgttatgta 27847791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 13354886 - 13355104
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctc-atcctggtcggaaatta 124  Q
    ||||| ||||| ||| ||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||| | ||||| ||||||| |    
T  13354886 ttcaagaatgatatggcagaataattacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctctagcctggccggaaatca 13354985  T
Q  125 tggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttc 222  Q
    ||| ||| |||||||||||||           |||| || ||||||||| ||||| ||||| ||  ||| ||| | |||||||| ||||||| |||||||    
T  13354986 tggagtggtgggtgttatgtatttttttttttatgaaagattaataaatgagactgaaatctaaaagtgattattgtgccatgtcattcttggatctttc 13355085  T
Q  223 ttgataaaatcattattgat 242  Q
    || ||||||||||| |||||    
T  13355086 tt-ataaaatcattcttgat 13355104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 43330952 - 43331071
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||||| ||   | || ||||||| ||    
T  43330952 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtactgaaattaatgttagccaataaaatttctgtcgggccggaaatcat 43331051  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  43331052 ggggtggtgggtgttatgta 43331071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 145
Target Start/End: Complemental strand, 16767480 - 16767378
Alignment:
Q  43 agaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttat 142  Q
    ||||||||||| ||||||||||||||||||||| ||  ||||||||||||||||| ||||||||||  |||| ||||||| || ||||| ||||||||||    
T  16767480 agaataatcactcttaaattttatcaagaaattatcctgaaattaatgttagccaataaaatctcagtctggccggaaatcatagggtggtgggtgttat 16767381  T
Q  143 gta 145  Q
    |||    
T  16767380 gta 16767378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 22591522 - 22591639
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| |||||||||| |||||||||||||| |||||||||||  ||||||||||||||||| |||||||||| ||| |  |||||| ||    
T  22591522 ttcaagaatgatatggcagaataatcccccttaaattttattaagaaattgtcctgaaattaatgttagccaataaaatctcagcctagcaggaaatcat 22591621  T
Q  126 ggggtgatgggtgttatg 143  Q
    |||||| ||||| |||||    
T  22591622 ggggtggtgggtattatg 22591639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 40262727 - 40262642
Alignment:
Q  60 attttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggtgttatgta 145  Q
    ||||||||||||||||||| |||||||||| ||||||| |||||||||| ||||  |||||||||||||||| |||||||||||||    
T  40262727 attttatcaagaaattgtcccgaaattaatattagccaataaaatctcaccctgaccggaaattatggggtggtgggtgttatgta 40262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 21393707 - 21393594
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||   ||||||||||||| ||| ||||||||    | || ||||||| ||||||||    
T  21393707 aatgacatggtagaataatcacccttagattttatcaagaaattgtactgaaattaatgttaaccaataaaatctatgtcgggccggaaatcatggggtg 21393608  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  21393607 gtgggtgttatgta 21393594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 22592880 - 22592969
Alignment:
Q  155 atgataggttaataaataagact--aaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||| ||||||||||||||||||  |||||| ||||||| ||| | || ||||| ||||||||||||||||||||||||||||| |||||    
T  22592880 atgaaaggttaataaataagactgaaaaatctaagggtgattattgtgtcatgtcattcttgaatctttcttgataaaatcattcttgat 22592969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 14941352 - 14941417
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||||||| |||||||| || |||||    
T  14941352 taaaatctaagggtgattattctgccatgtcattcttgaatctttcttaataaaatctttcttgat 14941417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 9293562 - 9293627
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  9293562 taaaatctaagggtgattattctgccatgtcattcttgaaaatttcttgataaaatctttcttgat 9293627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 16767357 - 16767285
Alignment:
Q  155 atgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgat 227  Q
    |||| |||||||||||| ||||| ||||| ||| ||| ||| | || ||||| ||||||||||||||||||||    
T  16767357 atgaaaggttaataaatgagactgaaatctaagagtgattattgtgtcatgtcattcttgaatctttcttgat 16767285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 37335824 - 37335894
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcat 235  Q
    ||||||| ||||| ||||| ||||||| ||| | || ||||| ||| || |||||||||||||||||||||    
T  37335824 aataaatgagactgaaatctaagggtgattactgtgtcatgtcattattaaatctttcttgataaaatcat 37335894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 10661966 - 10661901
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  10661966 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 10661901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 21393519 - 21393556
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattt 63  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  21393519 ttcaagaatgacatgacacaataatcacccttaaattt 21393556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 21936160 - 21936095
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||| | |||||||||  ||||||||||||||| || |||||    
T  21936160 taaaatctaagggtgattattctgccatatcattcttgaaattttcttgataaaatctttcttgat 21936095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 35160836 - 35160771
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  35160836 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 35160771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 43331092 - 43331157
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaa 230  Q
    ||||||| ||||| ||||| || |||| ||| | | |||||| |||||||||||||||||||||||    
T  43331092 aataaatgagactgaaatctaaaggtgattattgtaccatgtcattcttgaatctttcttgataaa 43331157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 27847711 - 27847655
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatc 233  Q
    ||||||| || |||| ||| |||| ||||| ||||||||||||||||| ||||||||    
T  27847711 taaaatctaacggtgattattctgtcatgtcattcttgaatctttcttaataaaatc 27847655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 37335753 - 37335829
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaa 102  Q
    ||||| ||||||||| ||||||||||||  ||| ||| |||||| |||||||   || |||||||||||||| ||||    
T  37335753 ttcaagaatgacatggcagaataatcacttttagattgtatcaaaaaattgttctgatattaatgttagccaataaa 37335829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 41051 - 41266
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  41051 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctcagcctggccggaaatcat 41150  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | | |||| | ||||||| |||||||||     
T  41151 ggggtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtaccatatcattcttggatctttctt- 41249  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  41250 ataaaatcattcttgat 41266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 41090 - 41025
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||| ||||||||||| || |||||    
T  41090 taaaatctaagggtgattattctgccatgtcattcttgaaatttttttgataaaatctttcttgat 41025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 21802347 - 21802129
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| ||||||||||  |||| ||||||| ||    
T  21802347 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaattgtcctgaaattaatgttagccaataaaatctcagtctggccggaaatcat 21802248  T
Q  126 gg---ggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttc 222  Q
    ||   |||| |||||||||||||         |||| || ||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||||    
T  21802247 ggggtggtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaagggtgattattgtgtcatgtcattcttgaatctttc 21802148  T
Q  223 ttgataaaatcattattgat 242  Q
    || ||||||||||| |||||    
T  21802147 tt-ataaaatcattcttgat 21802129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 36073390 - 36073605
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||  ||  ||||||||||||| ||| |||||||||| ||||  ||||||| ||    
T  36073390 ttcaagaatgacatggcagaataatcacccttaaattttatcaagaaatattcatgaaattaatgttaaccaataaaatctcagcctgaccggaaatcat 36073489  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||     
T  36073490 ggggtggtgggtgttatgtatctttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt- 36073588  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  36073589 ataaaatcattcttgat 36073605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 17655470 - 17655681
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  17655470 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 17655569  T
Q  126 ggggtgatgggtgt--tatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    ||| ||||||||||  ||||||         |||| |||||||||||| ||||| ||||| || |||  ||| | || ||||| |||||| |||||||||    
T  17655570 gggatgatgggtgttatatgta-ttttttttatgaaaggttaataaatgagactgaaatctaaaggtaattattatgtcatgtcattcttaaatctttct 17655668  T
Q  224 tgataaaatcatt 236  Q
    |||||||||||||    
T  17655669 tgataaaatcatt 17655681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 31078844 - 31078725
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  31078844 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 31078745  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||||||||||||||||||||    
T  31078744 ggggtgatgggtgttatgta 31078725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 42671715 - 42671925
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||   |||||||||||| ||| ||||||||||   ||| ||||||||||||||||    
T  42671715 aatgacatggcagaataatcacccttagattttatcaagaaattgtcctaaaattaatgttaaccaataaaatctcaatttggccggaaattatggggtg 42671814  T
Q  132 atgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaa 231  Q
    ||| |||||||||          | || ||||||| |||| ||||| ||||| |||  || ||| | || ||||| ||||||||||||||||||||||||    
T  42671815 atgagtgttatgtttttttttttacgaaaggttaacaaatgagactcaaatctaagaatgattattatgtcatgtcattcttgaatctttcttgataaaa 42671914  T
Q  232 tcattattgat 242  Q
    ||||| |||||    
T  42671915 tcattcttgat 42671925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 9088910 - 9089126
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  9088910 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 9089009  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || | || ||| | |||||||| |||||||||| ||||||    
T  9089010 ggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaaatctaaagatgattattgtgccatgtcattcttgaatttttctt 9089109  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  9089110 -ataaaatcattcttgat 9089126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 10442814 - 10442696
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||    
T  10442814 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcat 10442715  T
Q  126 ggggtgatgggtgttatgt 144  Q
    |||||| ||||||||||||    
T  10442714 ggggtggtgggtgttatgt 10442696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 46441884 - 46442100
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| || |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  46441884 ttcaagaatgacatggcaaaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcaacctggccggaaatcat 46441983  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  46441984 ggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 46442083  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  46442084 -ataaaatcattcttgat 46442100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 7745131 - 7745018
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||||||| |||||||||| ||||| ||||||| ||||||||    
T  7745131 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttagccaataaaatctcagcctggccggaaatcatggggtg 7745032  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  7745031 gtgggtgttatgta 7745018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 22199301 - 22199515
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||| |||| |||||||||||| |||||||||| ||||| | ||||| ||    
T  22199301 ttcaagaatgacatggcagaataatcagccttagattttatcaagaaatagtcttgaaactaatgttagccaataaaatctcagcctggccagaaatcat 22199400  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
     ||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| ||||||| |||||||||     
T  22199401 -gggtggtgggtgttatgtatttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttggatctttctt- 22199498  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  22199499 ataaaatcattcttgat 22199515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 242
Target Start/End: Original strand, 37219668 - 37219888
Alignment:
Q  29 aaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggg 128  Q
    ||||||||||||  | ||||||||| ||||||||||||||||||||||||  |||||||||||||| || ||||||||||  |||| ||||||| || ||    
T  37219668 aaaaatgacatggtaaaataatcactcttaaattttatcaagaaattgtcctgaaattaatgttagtcaataaaatctcagtctggccggaaatcattgg 37219767  T
Q  129 gtgatgggtgttatgta-------nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatcttt 221  Q
    ||||||| |||||||||                |||| |||||||||||||||| | ||||| |||| || ||| |||||||||| |||||| |||||||    
T  37219768 gtgatggatgttatgtatttttttttattttttatgaaaggttaataaataagattgaaatctaaggatgattattctgccatgtcattcttaaatcttt 37219867  T
Q  222 cttgataaaatcattattgat 242  Q
    ||||||||||||||| |||||    
T  37219868 cttgataaaatcattcttgat 37219888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 47290106 - 47290225
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  47290106 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 47290205  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| |||||||||||||    
T  47290206 ggggtggtgggtgttatgta 47290225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 53123071 - 53123287
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  53123071 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 53123170  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| || ||||||||| ||||| ||||| || | || ||| | |||||||| |||||||||| ||||||    
T  53123171 ggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaaatctaaagatgattattgtgccatgtcattcttgaatttttctt 53123270  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  53123271 -ataaaatcattcttgat 53123287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 37934965 - 37934758
Alignment:
Q  27 tcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatg 126  Q
    |||| |||||||||  |||||| ||||||||| |||||||||||||||| ||  ||||||||||||| ||| ||||||||||  ||||||||||||||||    
T  37934965 tcaagaatgacatggtagaatactcacccttagattttatcaagaaattatcctgaaattaatgttaaccaataaaatctcagtctggtcggaaattatg 37934866  T
Q  127 gggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttga 226  Q
    || || ||| |||||||||         |||| |||||||||||| ||| | ||||| ||||||| ||| | || ||| | ||| ||||||||||||| |    
T  37934865 ggatggtggttgttatgtatttttttttatgaaaggttaataaatgagattgaaatctaagggtgattattgtgtcatatcattattgaatctttcttaa 37934766  T
Q  227 taaaatca 234  Q
    ||||||||    
T  37934765 taaaatca 37934758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 24392707 - 24392826
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||   |||||||||||||| || |||||||||   | || ||||||| ||    
T  24392707 ttcaagaatgacatggcagaataatcacccttaaattttatcaagaaattgtactgaaattaatgttagtcaataaaatctctgtcgggccggaaatcat 24392806  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||||||||||||||||||||    
T  24392807 ggggtgatgggtgttatgta 24392826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 242
Target Start/End: Original strand, 4751492 - 4751703
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| |||||||| |||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||||||||||| ||||||||    
T  4751492 aatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggtcggaaatcatggggtg 4751591  T
Q  132 atgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataa 229  Q
     |||||||||||||           |||| || ||||||||| ||||| ||||| || |||||||| | |||||||| |||||| ||| |||||| ||||    
T  4751592 gtgggtgttatgtattttcttttttatgaaagattaataaatgagactgaaatctaaaggtggttattgtgccatgtcattcttaaatttttctt-ataa 4751690  T
Q  230 aatcattattgat 242  Q
    ||| ||| |||||    
T  4751691 aattattcttgat 4751703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 36072987 - 36073207
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| |||||||| |||||||| ||||||||||||||| |||  ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  36072987 ttcaagaatgacatggcagaataaccacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagtctggccggaaatcat 36073086  T
Q  126 ggggtgatgggtgttatgta-----nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctt 220  Q
    |||||| |||||||||||||              |||| || ||||||||| ||||| ||||| || |||||||| | |||||||| |||||||||| ||    
T  36073087 ggggtggtgggtgttatgtatcttttttttttttatgaaagattaataaatgagactgaaatctaaaggtggttattgtgccatgtcattcttgaatttt 36073186  T
Q  221 tcttgataaaatcattattgat 242  Q
    |||| ||||||||||| |||||    
T  36073187 tctt-ataaaatcatttttgat 36073207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 44893238 - 44893022
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  44893238 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 44893139  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||| || |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||    
T  44893138 gggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt 44893039  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  44893038 -ataaaatcattcttgat 44893022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 44893466 - 44893682
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  44893466 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 44893565  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||| || |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||    
T  44893566 gggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt 44893665  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  44893666 -ataaaatcattcttgat 44893682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 23964484 - 23964371
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||||||||||||| || |||||||||| ||||  ||||||| ||| ||||    
T  23964484 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagtcaataaaatctcagcctgaccggaaatcatgcggtg 23964385  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  23964384 gtgggtgttatgta 23964371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 49387913 - 49387703
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||| | ||||||| ||    
T  49387913 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctagccggaaatcat 49387814  T
Q  126 ggggtgatgggtgttatgta--nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttct 223  Q
    |||||| ||| |||||||||           |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| |||||    
T  49387813 ggggtggtggatgttatgtatctttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttct 49387714  T
Q  224 tgataaaatcat 235  Q
    | ||||||||||    
T  49387713 t-ataaaatcat 49387703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 50156597 - 50156484
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||   |||||||||||| ||| |||||||||| ||||| ||||||| ||||||||    
T  50156597 aatgacatggcagaataatcacccttagattttatcaagaaatagtcataaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtg 50156498  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  50156497 gtgggtgttatgta 50156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 30563249 - 30563452
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||| | ||||||| ||| | ||| |||||||||||||||| ||  | |||||||||| |||| |||||||||| ||||| ||||||| ||    
T  30563249 ttcaacaatgacacggcagaatagtcatctttagattttatcaagaaattatcctgcaattaatgttggccaataaaatctcagcctggccggaaatcat 30563348  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| |||||||||||||          |||| |||||||||||||||||| ||||| ||| ||| ||| | || ||||| |||||||||||||||||    
T  30563349 ggggtggtgggtgttatgtattttttttttatgaaaggttaataaataagactgaaatctaagtgtgattattgtgtcatgtcattcttgaatctttctt 30563448  T
Q  225 gata 228  Q
    ||||    
T  30563449 gata 30563452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 24128279 - 24128398
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  24128279 ttcaagaatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 24128378  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| ||| |||||||||    
T  24128379 ggggtggtggatgttatgta 24128398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 33530713 - 33530596
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| |||||||||||| |||||| ||| ||||| ||||||| ||    
T  33530713 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaactaatgttagccaataaaatttcagcctggccggaaatcat 33530614  T
Q  126 ggggtgatgggtgttatgt 144  Q
     ||||| ||||||||||||    
T  33530613 -gggtggtgggtgttatgt 33530596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 2624877 - 2625093
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||| ||| ||||||||||||||||| |||||||||||||||  ||  |||||||||||||  || ||||||||||  |||| ||||||| ||    
T  2624877 ttcaagaatgaaatggcagaataatcacccttagattttatcaagaaataatcatgaaattaatgttaatcaataaaatctcagtctggccggaaatcat 2624976  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    || ||| |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | ||| |||| ||| |||||||||||||    
T  2624977 ggagtggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgctatgtcatttttgaatctttctt 2625076  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  2625077 -ataaaatcattcttgat 2625093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 44744478 - 44744593
Alignment:
Q  29 aaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggg 128  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||||||  |||||| ||||||| |  |||||| |||  |||| ||||||| || ||    
T  44744478 aaaaatgacatggtagaataatcacccttaaattttatcaaaaaattgtcctgaaattgatgttagtcgataaaat-tcagtctggccggaaatcatagg 44744576  T
Q  129 gtgatgggtgttatgta 145  Q
    ||| |||||||||||||    
T  44744577 gtggtgggtgttatgta 44744593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 160 - 242
Target Start/End: Complemental strand, 11314142 - 11314060
Alignment:
Q  160 aggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||||||||||||||| |||| ||||||| ||| | || ||||| ||||||| ||||||||||||||||||||| |||||    
T  11314142 aggttaataaataagactataatctaagggtgattattgtgtcatgtcattcttgcatctttcttgataaaatcattcttgat 11314060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 36073762 - 36073650
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    |||||||||||| |||||||||  ||| ||||||| |||||||||||   |||||||| ||||||| ||||||||||   ||| ||||||| ||||||||    
T  36073762 aatgacatgacaaaataatcacttttagattttatgaagaaattgtcctaaaattaatattagccaataaaatctcagtttggccggaaatcatggggtg 36073663  T
Q  132 atgggtgttatgt 144  Q
     || |||||||||    
T  36073662 gtgcgtgttatgt 36073650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 9111339 - 9111416
Alignment:
Q  60 attttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtgatgggt 137  Q
    ||||||||||||||||||||||||||||| |||| ||| |||||| ||  ||||| || |||| ||||||||||||||    
T  9111339 attttatcaagaaattgtctcgaaattaaagttaaccaataaaatttctacctggccgaaaatcatggggtgatgggt 9111416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 11314253 - 11314188
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagcca 97  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||   |||||||||||||||||    
T  11314253 aatgacatgacagaataatcatccttagattatatcaagaaattgttctgaaattaatgttagcca 11314188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 33530674 - 33530739
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||| ||||||||||||||| || |||||    
T  33530674 taaaatctaagggtgattattctgccatgtcattcttgaatttttcttgataaaatctttcttgat 33530739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 36073026 - 36072961
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  36073026 taaaatctaagggtggttattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 36072961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 4751525 - 4751460
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||||||| |||||||||| ||||||| |  ||||||||||||||| || |||||    
T  4751525 taaaatctaagggtggttattctgccatgtcattcttggaattttcttgataaaatctttcttgat 4751460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 10442672 - 10442596
Alignment:
Q  165 aataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||| ||||| || |||| ||| | |||||||| ||||||||||||||||| ||||||||||| |||||    
T  10442672 aataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatctttctt-ataaaatcattcttgat 10442596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 10442775 - 10442840
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  10442775 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 10442840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 25063424 - 25063383
Alignment:
Q  201 ccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  25063424 ccatgtcattcttgaatctttcttgataaaatcattcttgat 25063383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 31078805 - 31078870
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  31078805 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 31078870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 36073349 - 36073276
Alignment:
Q  163 ttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcatt 236  Q
    ||||||||||||||| ||||| ||| ||  ||| |||| ||| | |||||| ||||||||||||||||||||||    
T  36073349 ttaataaataagactgaaatctaagagtaattattctggcatatcattcttaaatctttcttgataaaatcatt 36073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 42671748 - 42671683
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||| ||| ||||||||||| ||||||||    
T  42671748 taaaatctaagggtgattattctgccatgtcattcttaaattttttttgataaaatctttattgat 42671683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 49387874 - 49387939
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  49387874 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 49387939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 21802308 - 21802363
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaat 232  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||    
T  21802308 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaat 21802363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 33530571 - 33530493
Alignment:
Q  163 ttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||||||||||| ||||| || |||| ||| | |||||||| ||||||| |||||| || ||||||||||| |||||    
T  33530571 ttaataaataagactgaaatctaaaggtgattattgtgccatgtcattcttggatcttt-tttataaaatcattcttgat 33530493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 2624916 - 2624851
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||| | |||||||||  ||||||||||||||| || |||||    
T  2624916 taaaatctaagggtgattattctgccatttcattcttgaaattttcttgataaaatctttcttgat 2624851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 7745098 - 7745163
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||| ||  ||||||||||||||| || |||||    
T  7745098 taaaatctaagggtgattattctgccatgtcattcttaaaattttcttgataaaatctttcttgat 7745163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 22199340 - 22199275
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| |||| || ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  22199340 taaaatctaaggctgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 22199275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 47890 - 48105
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  47890 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 47989  T
Q  126 ggggtgatgggtgttatgtannnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttg 225  Q
    |||||| |||||||||||||         |||| || ||||||||| ||||| ||||| || | || ||| | ||| |||| |||||||||||||||||     
T  47990 ggggtggtgggtgttatgtatttatttttatgaaagattaataaatgagactgaaatctaaagatgattattgtgctatgtcattcttgaatctttctt- 48088  T
Q  226 ataaaatcattattgat 242  Q
    ||||||||||| |||||    
T  48089 ataaaatcattcttgat 48105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 47929 - 47864
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  47929 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 47864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 11661 - 11877
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||    
T  11661 ttcaagaatgacatgacagaataatcacccttagattttatcaagaaatagtcatgaaattaatgttaaccaataaaatctcagcctggccgaaaatcat 11760  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    |||||| || ||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||| ||| ||||||    
T  11761 ggggtggtgagtgttatgtattttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttaaatttttctt 11860  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  11861 -ataaaatcattcttgat 11877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 11700 - 11635
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||| ||||| |||||||||  ||||||||||||||| || |||||    
T  11700 taaaatctaagggtgattattctgtcatgtcattcttgaaattttcttgataaaatctttcttgat 11635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 25976 - 26192
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  25976 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcaggctggccggaaatcat 26075  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||| || |||||||||||||          |||| || ||||||||| ||||| ||||| || |||| ||| | |||||||| |||||||||| ||||||    
T  26076 gggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaaggtgattattgtgccatgtcattcttgaatttttctt 26175  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  26176 -ataaaatcattcttgat 26192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 16024 - 16240
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  16024 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcaggctggccggaaatcat 16123  T
Q  126 ggggtgatgggtgttatgta-nnnnnnnnnatgataggttaataaataagactaaaatcaaagggtggttaatctgccatgtgattcttgaatctttctt 224  Q
    ||| || |||||||||||||          |||| || ||||||||| ||||| ||||| || | || ||| | |||||||| |||||||||| ||||||    
T  16124 gggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaaatctaaagatgattattgtgccatgtcattcttgaatttttctt 16223  T
Q  225 gataaaatcattattgat 242  Q
     ||||||||||| |||||    
T  16224 -ataaaatcattcttgat 16240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 8442 - 8561
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||||||| ||   ||||||||||||| ||| ||||||||||  |||| ||||||| ||    
T  8442 ttcaagaatgacatggcagaataatcacccttagattttatcaagaaatagttctgaaattaatgttaaccaataaaatctcaggctggccggaaatcat 8541  T
Q  126 ggggtgatgggtgttatgta 145  Q
    ||| || |||||||||||||    
T  8542 gggatggtgggtgttatgta 8561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 8481 - 8416
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  8481 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 8416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 16063 - 15998
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  16063 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 15998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 26015 - 25950
Alignment:
Q  177 taaaatcaaagggtggttaatctgccatgtgattcttgaatctttcttgataaaatcattattgat 242  Q
    ||||||| ||||||| ||| |||||||||| |||||||||  ||||||||||||||| || |||||    
T  26015 taaaatctaagggtgattattctgccatgtcattcttgaaattttcttgataaaatctttcttgat 25950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 4442 - 4555
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatggggtg 131  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| || |||| ||||||||    
T  4442 aatgacatggcagaataatcacccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtg 4541  T
Q  132 atgggtgttatgta 145  Q
     |||||||||||||    
T  4542 gtgggtgttatgta 4555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 12882 - 13001
Alignment:
Q  26 ttcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattat 125  Q
    ||||| ||||||||| ||||||||||| ||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||||| ||||| ||||||| ||    
T  12882 ttcaagaatgacatggcagaataatcatccttagattttatcaagaaatagtcctgaaattaatgttaaccaataaaatctcagcctggccggaaatcat 12981  T
Q  126 ggggtgatgggtgttatgta 145  Q
    |||||| ||| |||||||||    
T  12982 ggggtggtggatgttatgta 13001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 3114 - 3190
Alignment:
Q  32 aatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctca 108  Q
    ||||||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  3114 aatgacatggcagaataatcacccttagattttatcaagaaatagtcttgaaattaatgttagccaataaaatctca 3190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 85467 - 85575
Alignment:
Q  27 tcaaaaatgacatgacagaataatcacccttaaattttatcaagaaattgtctcgaaattaatgttagccagtaaaatctcatcctggtcggaaattatg 126  Q
    |||| ||||||||| ||||||||||| ||||||||||||| |||||||| ||  ||||||||||||||||| |||||||| | |||||||| |||| |||    
T  85467 tcaagaatgacatggcagaataatcatccttaaattttatgaagaaattatcctgaaattaatgttagccaataaaatcttagcctggtcgaaaatcatg 85566  T
Q  127 gggtgatgg 135  Q
    |||| ||||    
T  85567 gggtcatgg 85575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University