View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_3 (Length: 697)

Name: NF11737A_low_3
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_3
NF11737A_low_3
[»] chr3 (4 HSPs)
chr3 (268-491)||(44989526-44989749)
chr3 (532-672)||(44989747-44989871)
chr3 (179-213)||(44989495-44989529)
chr3 (38-146)||(54417046-54417153)
[»] chr5 (1 HSPs)
chr5 (38-145)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (40-146)||(26835618-26835723)
chr8 (40-131)||(13580397-13580487)
[»] chr4 (1 HSPs)
chr4 (45-146)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (40-146)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (40-92)||(9815749-9815801)
chr6 (40-136)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (40-92)||(8246797-8246849)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 268 - 491
Target Start/End: Original strand, 44989526 - 44989749
Alignment:
Q  268 tcatgtataggtgctctgttgctcccccaaacatgtaacgagtgctgaaagtgtgttccaccatatagaatagaaaaattgtacattcaatcaaatacga 367  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  44989526 tcatgtataggtgctctgttgctgccccaaacatgtaacgagtgctgaaagtgtgtaacaccatatagaatagaaaaattgtacattcaatcaaatacga 44989625  T
Q  368 ttctacttttaaattaagtcacgttatggtttatgtcatagtcaagataaaagatacaagcaattatatcttatctaaatctacnnnnnnnatatcttat 467  Q
    || | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||       |||||||||    
T  44989626 ttatccttttaaattaagtaacgttatggtttatgtcatagtcaagataaaagatagaagcaattatatcttatctaaatcaactttttttatatcttat 44989725  T
Q  468 aaattaagtcagtcatattgtttt 491  Q
    ||||||||||||||||||||||||    
T  44989726 aaattaagtcagtcatattgtttt 44989749  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 532 - 672
Target Start/End: Original strand, 44989747 - 44989871
Alignment:
Q  532 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagttgggctcggctaggttttattttgatctggtatgcaactctgtctgt 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||  |||||||||||||||| ||||| |    
T  44989747 tttgctattcggtgagattgctctaggactttgtgtctttagggagtctcagtta--------------ttatt--gatctggtatgcaactatgtctct 44989830  T
Q  632 ggtctatccaagaaacctcattatatgtctgtcattctctt 672  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44989831 ggtctatccaagaaacctcattatatgtctgtcattctctt 44989871  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 44989495 - 44989529
Alignment:
Q  179 gaatactttcaaataattaaagggtacaaattcat 213  Q
    |||||||||||||||||||||||||||||||||||    
T  44989495 gaatactttcaaataattaaagggtacaaattcat 44989529  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 146
Target Start/End: Complemental strand, 54417153 - 54417046
Alignment:
Q  38 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 137  Q
    |||||| |||||||||||||||| |||||| | ||||||| ||  |||||  |||||| ||||||| | ||||||||   ||||||  |||||| |||||    
T  54417153 atcaaaattattatttttacttggtagttagtgctatatagatacatttc-cttttaattcactttgattaattctactgaaaatatgtttttaaagaat 54417055  T
Q  138 cttgattat 146  Q
     ||||||||    
T  54417054 tttgattat 54417046  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 16570627 - 16570521
Alignment:
Q  38 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 137  Q
    |||||| |||||||||||||||  |||||  ||| ||||| ||  |||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||     
T  16570627 atcaaaattattatttttacttattagttggtaccatatagatatatttcttttt-aattcactttgattaattctattaaaaatatatttttagagaac 16570529  T
Q  138 cttgatta 145  Q
     |||||||    
T  16570528 tttgatta 16570521  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 26835723 - 26835618
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 139  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||  ||||| ||||||| |  |||| | |||||||||  |||||| ||||||||||||  |    
T  26835723 caaaattattatttttacttaatagttagtacaatataaatatatttc-tttttaattttcttttattaattctattgaaaatatatttttagagaactt 26835625  T
Q  140 tgattat 146  Q
    |||||||    
T  26835624 tgattat 26835618  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 13580487 - 13580397
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacattttta 131  Q
    |||| ||||||||||||||| ||||||| || |||||||||  ||||| ||||||| || |||| | |||||||||  |||||| |||||||    
T  13580487 caaaattattatttttacttaatagttagtattatataaatatatttc-tttttaattcgctttgattaattctattgaaaatatattttta 13580397  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 36071681 - 36071581
Alignment:
Q  45 ttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatcttgatt 144  Q
    ||||||||||||||||||||||| ||||||||| ||  ||||| ||||||| |  |||| | |||||| ||  |||||| ||||||||||||  ||||||    
T  36071681 ttattatttttacttgatagttagtactatatagatatatttc-tttttaattttctttgattaattcaattgaaaatatatttttagagaactttgatt 36071583  T
Q  145 at 146  Q
    ||    
T  36071582 at 36071581  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 40877054 - 40876949
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 139  Q
    |||| |||||||||||||||| |||||| || |||||||||  ||||| |||||||||   ||  | |||||||||  |||||| ||||||| |||| ||    
T  40877054 caaaattattatttttacttggtagttagtattatataaatatatttc-tttttaacttgtttggattaattctattgaaaatatatttttatagaacct 40876956  T
Q  140 tgattat 146  Q
    |||||||    
T  40876955 tgattat 40876949  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 9815801 - 9815749
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 92  Q
    |||| |||||||||||||||  |||||||||||||||| ||  ||||||||||    
T  9815801 caaaattattatttttacttagtagttaatactatatagatatatttcttttt 9815749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 12174320 - 12174415
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaa 136  Q
    |||| |||||||||||||||  |||||| ||||||||| ||  ||||| ||||||| ||  ||| | ||||| ||| ||||||| ||||||||||||    
T  12174320 caaaattattatttttacttagtagttagtactatatagatatatttc-tttttaattcgttttgattaattatattaaaaatatatttttagagaa 12174415  T

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Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 8246849 - 8246797
Alignment:
Q  40 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 92  Q
    |||| ||||||||||||||| ||||||| ||||||||| ||  ||||||||||    
T  8246849 caaaattattatttttacttaatagttagtactatatagatatatttcttttt 8246797  T

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