View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_30 (Length: 460)

Name: NF11737A_low_30
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_30
NF11737A_low_30
[»] chr1 (2 HSPs)
chr1 (20-441)||(40425371-40425794)
chr1 (102-166)||(8807595-8807659)
[»] chr8 (2 HSPs)
chr8 (298-358)||(5057475-5057535)
chr8 (121-186)||(32408434-32408499)
[»] chr2 (2 HSPs)
chr2 (20-72)||(7633541-7633592)
chr2 (86-150)||(43260444-43260508)
[»] chr3 (2 HSPs)
chr3 (91-170)||(54485558-54485637)
chr3 (20-69)||(31261054-31261103)
[»] chr4 (1 HSPs)
chr4 (353-402)||(53542367-53542416)
[»] chr7 (2 HSPs)
chr7 (134-194)||(5335916-5335976)
chr7 (86-194)||(46989899-46990007)


Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 40425794 - 40425371
Alignment:
Q  20 tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctagcaactgagctacgctacatctgatctactctccttactttggaatataca 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40425794 tttcttgatagtttctcctatagtgtttcttggtcttcctttgcctctagcaactgagctacactacatctgatctactctccttactttggaatataca 40425695  T
Q  120 agtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgctatcccaactacctctctaatataataattcctaa 219  Q
     |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40425694 ggtctccttcacacatgcccaaaccccctaaatctagatccaaccatctttcctataaaagatgctatcccaactacctctctaatataataattcctaa 40425595  T
Q  220 gcatactctatctagtatcccacacatctagcatagcattctcatcttttctacactaactttactccggtgttgacattttaccacccaccactccatc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40425594 gcatactctatctagtatcccacacatctagcatagcattctcatcttttctacactaactttactccggtgttgacattttaccacccaccactccatc 40425495  T
Q  320 acgtacaacattgttggtcttatagttgtacggtaaaacttcccctttaccttgagcggtaccttcttatcacataaaaccccaaggc--tccggtattt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||    
T  40425494 acgtacaacattgttggtcttatagttgtacggtaaaacttcccctttaccttgagcggtaccttcttatcacataaaaccccaaggctttcctgtattt 40425395  T
Q  418 cagtctccttgcttgaatctgatg 441  Q
    ||||||||||||||||||||||||    
T  40425394 cagtctccttgcttgaatctgatg 40425371  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 8807659 - 8807595
Alignment:
Q  102 cttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccat 166  Q
    |||||| |||||| ||||||| | || |||||||||||||| | ||||| || ||||||||||||    
T  8807659 cttactatggaatctacaagtttgctccacacatgcccaaagcacctaagtcgagattcaaccat 8807595  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 358
Target Start/End: Complemental strand, 5057535 - 5057475
Alignment:
Q  298 ttttaccacccaccactccatcacgtacaacattgttggtcttatagttgtacggtaaaac 358  Q
    ||||||| | || |||||||||  |||||||||||||||||||| ||||||||| ||||||    
T  5057535 ttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgtacgataaaac 5057475  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 32408434 - 32408499
Alignment:
Q  121 gtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgcta 186  Q
    ||||||||||||||||||||||||  |||| |  ||||||||| || ||| ||||||||| |||||    
T  32408434 gtctccttcacacatgcccaaaccttctaagtagagattcaacaatattttctataaaaggtgcta 32408499  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7633541 - 7633592
Alignment:
Q  20 tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctagcaa 72  Q
    ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  7633541 tttcttgatagtttctcctgtag-gtttcttggttttcctttgcctctagcaa 7633592  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 43260508 - 43260444
Alignment:
Q  86 catctgatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaa 150  Q
    |||||||||||||||||||||| | |||| |||||||||  |   |||||||||||||| |||||    
T  43260508 catctgatctactctccttactatagaatctacaagtcttttcttcacatgcccaaaccacctaa 43260444  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 54485637 - 54485558
Alignment:
Q  91 gatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccatcttt 170  Q
    |||||||||||||| || ||||||  | | ||||||| ||||||||| |||||| | |||||  ||||||||||||||||    
T  54485637 gatctactctccttcctatggaatcgataggtctcctccacacatgctcaaaccacttaaattgagattcaaccatcttt 54485558  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 31261054 - 31261103
Alignment:
Q  20 tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctag 69  Q
    ||||||||||||||||| |||||| | ||| ||||||||| |||||||||    
T  31261054 tttcttgatagtttctcttatagtttttctaggtcttcctctgcctctag 31261103  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 402
Target Start/End: Original strand, 53542367 - 53542416
Alignment:
Q  353 taaaacttcccctttaccttgagcggtaccttcttatcacataaaacccc 402  Q
    |||||||| ||||||| |||||| || ||||| |||||||||||||||||    
T  53542367 taaaactttccctttatcttgagtggcacctttttatcacataaaacccc 53542416  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 5335976 - 5335916
Alignment:
Q  134 atgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgctatcccaact 194  Q
    ||||||||||| ||||| ||||| ||| |||||||||||||  | |||||||| |||||||    
T  5335976 atgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctaccccaact 5335916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 46990007 - 46989899
Alignment:
Q  86 catctgatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgct 185  Q
    ||||||||||||| || |||||  | ||| || | ||||||| |||||||||||||||| |||||    | |||||||||||||| ||| || || ||||    
T  46990007 catctgatctactatctttactgcgaaatctataggtctcctccacacatgcccaaaccacctaagatgaaattcaaccatcttttctacaataggtgct 46989908  T
Q  186 atcccaact 194  Q
    | |||||||    
T  46989907 accccaact 46989899  T

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