View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_300 (Length: 258)
Name: NF11737A_low_300
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_300 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 9523091 - 9522904
Alignment:
| Q |
47 |
atatatactgtcgaatagaaacaacaagcaacgtgaaatggaagaatgcaaacatggctatgtgctattatagaaattaccataatacttatagttatag |
146 |
Q |
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| T |
9523091 |
atatatactgtcgaatagaaacaacaagcaacgtgaaatggaagaatgcaaacatggctatgtgctattacagaaattaccataatacttatagttatag |
9522992 |
T |
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| Q |
147 |
nnnnnnnnnnnnnnnnnaaagaacttatagttatag-ttatacagtagaacaatgtcatagtgcattatagaattaataagtacaatggt |
235 |
Q |
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| T |
9522991 |
--ttttttttttttttgaaagaacttatagttatagtttatacagtagaacaatgtcatagtgcattatagaattaataagtacaatggt |
9522904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 20196497 - 20196446
Alignment:
| Q |
64 |
gaaacaacaagcaacgtgaaatggaagaatgcaaacatggctatgtgctatt |
115 |
Q |
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| T |
20196497 |
gaaacaacgagcaacgtgaaatggaagaacgcaaacatggctatatgctatt |
20196446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 20196402 - 20196356
Alignment:
| Q |
189 |
agtagaacaatgtcatagtgcattatagaattaataagtacaatggt |
235 |
Q |
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| T |
20196402 |
agtacaacaatttcatagtgcattatagaattaataagtacaatggt |
20196356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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