View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_302 (Length: 258)
Name: NF11737A_low_302
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_302 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 41410336 - 41410578
Alignment:
| Q |
7 |
tttcgtgttaataagaacccaagcatatcattttgtgcgaaattgaaacccattcagtttg-ctaatttatgtatcttgcaataatttacagctgaaagc |
105 |
Q |
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| T |
41410336 |
tttcgtgttaataagaacccaagcatatcattttgtgtgaaattgaaaaccattcagtttggctaatttatgtatcttgcaataatttacagctgaaagc |
41410435 |
T |
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| Q |
106 |
ttttagcttggaaactggtccatgccccaaggaccaagagatgaaaaggattacatattcaggaccaggagaaggaagggattacatattcagatggcaa |
205 |
Q |
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| T |
41410436 |
ttttagcttggaacctggtccatgcaccaaggaccaagagatgaaagggattacatattcaggaccaggagaaggaagggattacatattcagatggcaa |
41410535 |
T |
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| Q |
206 |
ggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
248 |
Q |
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| T |
41410536 |
ggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
41410578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 2978872 - 2978956
Alignment:
| Q |
62 |
agtttgctaatttatgtatcttgcaataatttacagctgaaagcttttagcttggaaactggtccatgccccaaggaccaagaga |
146 |
Q |
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| T |
2978872 |
agttttctaatttatgtatcttgcaataaatcaaaggtgaaagctttcagcttggaacctggtacacgcaccaaggacctagaga |
2978956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 2978953 - 2979027
Alignment:
| Q |
174 |
gagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
248 |
Q |
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| T |
2978953 |
gagaaggaagggatcatagattcagatggtgaggttttggcaagagggagagggacctacaagtgtgagcagaag |
2979027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 37519481 - 37519560
Alignment:
| Q |
169 |
accaggagaaggaagggattacatattcagatggcaaggttttggcaagaaggaaaggaacctgctagtgtgagcagaag |
248 |
Q |
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| T |
37519481 |
accaagagaatgaagggatcatatattcggatggtgaggttttggcaagacggaaatgaacatacaagtgtgagcagaag |
37519560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 37519393 - 37519439
Alignment:
| Q |
62 |
agtttgctaatttatgtatcttgcaataatttacagctgaaagcttt |
108 |
Q |
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| T |
37519393 |
agttggctaatttatgtatcttgcaataaattacagatgaatgcttt |
37519439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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