View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_308 (Length: 255)
Name: NF11737A_low_308
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_308 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 87599 - 87358
Alignment:
| Q |
1 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87599 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
87500 |
T |
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| Q |
101 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87499 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
87400 |
T |
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| Q |
201 |
cacatttttaaatttcttctttgactccatattcatctcagt |
242 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
87399 |
cacatttttcaatttcttctttgactccatattcatctcagt |
87358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 95615 - 95388
Alignment:
| Q |
1 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
95615 |
tcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcgg |
95516 |
T |
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| Q |
101 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
200 |
Q |
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| T |
95515 |
cgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgtt |
95430 |
T |
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| Q |
201 |
cacatttttaaatttcttctttgactccatattcatctcagt |
242 |
Q |
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| T |
95429 |
cacatttttcaatttcttttttgactccatattcatctcagt |
95388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40878684 - 40878925
Alignment:
| Q |
1 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878684 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
40878783 |
T |
|
| Q |
101 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878784 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
40878883 |
T |
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| Q |
201 |
cacatttttaaatttcttctttgactccatattcatctcagt |
242 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40878884 |
cacatttttcaatttcttctttgactccatattcatctcagt |
40878925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 40870667 - 40870894
Alignment:
| Q |
1 |
tcatgattagccatatatcttatagcttcaactctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcacaagcatgctcgg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
40870667 |
tcatgattagccatatatcttatatcttcaactctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcacaagcatgctcgg |
40870766 |
T |
|
| Q |
101 |
cgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactcttgtt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
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| T |
40870767 |
cgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatg--------------ccacactcttgtt |
40870852 |
T |
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| Q |
201 |
cacatttttaaatttcttctttgactccatattcatctcagt |
242 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
40870853 |
cacatttttcaatttcttttttgactccatattcatctcagt |
40870894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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