View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_309 (Length: 255)
Name: NF11737A_low_309
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_309 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 32124760 - 32124998
Alignment:
| Q |
5 |
caataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaagaagggttaaacctggaattccaattt |
104 |
Q |
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| T |
32124760 |
caataaatgctaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacacttttaaaaaaggattaaacctggaattccaattt |
32124859 |
T |
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| Q |
105 |
tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc |
204 |
Q |
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| T |
32124860 |
tacctgttgtagtcaattttacttgtttttaacattcatctttttattttacgtggtgaagttctcttttcctcttgcagctaaacacattgtcacacgc |
32124959 |
T |
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| Q |
205 |
gtttattcccttattcccgctctaaatgaagaacatatt |
243 |
Q |
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| T |
32124960 |
atttattcccttattcccgctctaaatgaagaacatatt |
32124998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 32150109 - 32150176
Alignment:
| Q |
6 |
aataaatactaaaaattcaatataagtgagggaaattatcgagggtctctctataatatgcacactttta |
75 |
Q |
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||||||| |||||||||| ||||||||| ||||||||| |||||||||| ||||| ||||||||||| |
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| T |
32150109 |
aataaatgttaaaaattcactataagtgaaggaaattatgtagggtctctc--taataggcacactttta |
32150176 |
T |
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