View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_317 (Length: 251)
Name: NF11737A_low_317
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_317 |
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Alignment Details
Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 32928851 - 32928733
Alignment:
| Q |
14 |
gatggacatccacaaatacatatattcataacacaaatgttgataattttattttataaggatttaaacaaacatttaacctttattttaaaagcaaata |
113 |
Q |
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| T |
32928851 |
gatggacatccactgatacatatattcataacacaaatgttgataattttat-----aaggatttaaacaaacatttaacctttattttaaaagcaaata |
32928757 |
T |
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| Q |
114 |
agtagattaatagttagattgtat |
137 |
Q |
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|||||||||||||||||||||||| |
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| T |
32928756 |
agtagattaatagttagattgtat |
32928733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 32928700 - 32928627
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32928700 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
32928627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 53247509 - 53247436
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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| T |
53247509 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
53247436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 489416 - 489489
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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| T |
489416 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
489489 |
T |
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Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 41612899 - 41612825
Alignment:
| Q |
160 |
acgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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| T |
41612899 |
acgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc |
41612825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 46751004 - 46750931
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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||||||||||||||||| ||||||||||||| |||||| |||||| || | |||||| ||||| ||||||||| |
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| T |
46751004 |
cgaccacagtgggagtcaaacccacgaccttttgatccaaagtcaaacacactaatctactgcattatgcggtc |
46750931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 40448549 - 40448476
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40448549 |
cgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc |
40448476 |
T |
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 1483054 - 1483127
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
| |
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|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1483054 |
cgaccacaatggtagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
1483127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 3222661 - 3222588
Alignment:
| Q |
161 |
cgaccacagtgggagtcgaacccacgaccttctgatccgaagtcagacgcgctaatccactgcgctatgcggtc |
234 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3222661 |
cgaccacagtgggagtcgaacccacgaccttttgatccgaagtcaaacgcgctaatccactgcgctatgcggtc |
3222588 |
T |
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