View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11737A_low_318 (Length: 251)
Name: NF11737A_low_318
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_318 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46899151 - 46898918
Alignment:
| Q |
1 |
aaccatacccaaaagactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46899151 |
aaccatacccaaaagactttggagaaccaatatttccaacgcttattgcagaacactctcttgttttccaagaagcatccctaaacctagcaggatcctc |
46899052 |
T |
|
| Q |
101 |
atgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46899051 |
atgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaa |
46898952 |
T |
|
| Q |
201 |
tttggtggttgctgccttgtctccaccggatgtc |
234 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
46898951 |
tttggtggttgctgccttgtctccacctgatgtc |
46898918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 3 - 203
Target Start/End: Complemental strand, 46864033 - 46863833
Alignment:
| Q |
3 |
ccatacccaaaagactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctcat |
102 |
Q |
| |
|
|||| |||||| || |||| |||||||||| | |||| |||||| | |||| |||||| || |||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
46864033 |
ccatccccaaatgattttgaagaaccaatagtcccaatgcttatagaagaacactctcctgacttccaagaatgatccctagacttagcaggatcctcat |
46863934 |
T |
|
| Q |
103 |
gaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaatt |
202 |
Q |
| |
|
|| |||| |||||||| |||| | ||||| |||||||||| ||||| || | || ||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
46863933 |
gacgaaaattacacttactaccaaagaaacatttctcaccattggaatacatcctgcatagcttcatcttgtgaatgaatttttgatcttcctcccaatt |
46863834 |
T |
|
| Q |
203 |
t |
203 |
Q |
| |
|
| |
|
|
| T |
46863833 |
t |
46863833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 46890509 - 46890389
Alignment:
| Q |
72 |
gaatcatccctaaacctagcaggatcctcatgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatct |
171 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| || |||| ||||| ||||| ||||||||||| |||||| |||| ||||| ||||| ||||| |
|
|
| T |
46890509 |
gaatcatccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgcaataattcttgcacagtttcattg |
46890410 |
T |
|
| Q |
172 |
tgtgaatgattttttgatctt |
192 |
Q |
| |
|
| || |||||||||| ||||| |
|
|
| T |
46890409 |
tttgtatgatttttttatctt |
46890389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 22691886 - 22691982
Alignment:
| Q |
101 |
atgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
197 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||| | ||||||||| || ||||| || ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
22691886 |
atgaagaaaactacacttatcatcataaggacattctttaccattgtagtatttcttgcatagccccatcttgtgaatgattttttgatcatcatcc |
22691982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 19845907 - 19845811
Alignment:
| Q |
101 |
atgaagaaagctacacttatcaccataaggacattcctcaccattgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
197 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||| || ||||| || ||| |||||||||||||||||| | ||| |||||| |
|
|
| T |
19845907 |
atgaagaaaaatacatgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatcc |
19845811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 9150885 - 9150755
Alignment:
| Q |
15 |
gactttggagaaccaatatttccaacgcttattgcagaatactctcttgttttccaagaatcatccctaaacctagcaggatcctcatgaagaaagctac |
114 |
Q |
| |
|
|||||||||||||||||| || | | | ||||||||||| | |||||| |||| | ||| |||||||||||||| ||| |||||| ||||| ||||| |
|
|
| T |
9150885 |
gactttggagaaccaataatttcgatgtttattgcagaacaatctcttaatttcttaaaattatccctaaacctagaagggccctcattaagaaggctac |
9150786 |
T |
|
| Q |
115 |
acttatcaccataaggacattcctcaccatt |
145 |
Q |
| |
|
| || |||||||| ||| |||||||| |||| |
|
|
| T |
9150785 |
atttctcaccatagggatattcctcatcatt |
9150755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 9150464 - 9150390
Alignment:
| Q |
149 |
atacttcttacacagcttcatcttgtgaatgattttttgatcttcatcccaatttggtggttgctgccttgtctc |
223 |
Q |
| |
|
||||||||| |||| |||||||||| |||| ||||| | || | ||||||||||| ||||| |||||||| |||| |
|
|
| T |
9150464 |
atacttcttgcacaacttcatcttgagaataattttctaatttccatcccaatttcgtggtggctgccttatctc |
9150390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University