View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_321 (Length: 251)

Name: NF11737A_low_321
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_321
NF11737A_low_321
[»] chr6 (8 HSPs)
chr6 (18-231)||(33386287-33386500)
chr6 (18-231)||(33282826-33283044)
chr6 (18-164)||(33260530-33260681)
chr6 (65-201)||(33416915-33417051)
chr6 (166-231)||(33260964-33261029)
chr6 (83-189)||(33281666-33281772)
chr6 (82-192)||(33397402-33397512)
chr6 (93-192)||(33408324-33408423)
[»] scaffold0428 (3 HSPs)
scaffold0428 (18-191)||(11248-11426)
scaffold0428 (18-231)||(4586-4800)
scaffold0428 (83-189)||(12480-12586)
[»] chr2 (1 HSPs)
chr2 (70-194)||(17442721-17442845)


Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 33386287 - 33386500
Alignment:
Q  18 gacatcactaattcagtcaagcaagcatgatttaaaaatgaattgagcctttattcaagattttctcagaagacaaatcaccgctttgtccagtcaaact 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386287 gacaacactaattcagtcaagcaagcatgatttaaaaatgaattgagcctttattcaagattttctcagaagacaaatcaccgctttgtccagtcaaact 33386386  T
Q  118 agcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgtat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33386387 agcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgtat 33386486  T
Q  218 atgtgtgttactgc 231  Q
    ||||||||||||||    
T  33386487 atgtgtgttactgc 33386500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 33282826 - 33283044
Alignment:
Q  18 gacatcactaattcagtcaagcaagcatgatttaaaaatgaattgagc-----ctttattcaagattttctcagaagacaaatcaccgctttgtccagtc 112  Q
    |||| |||| ||||| ||||||||||| ||||| |||||| ||| |||     || ||||||||||| ||||||||||||||||||| |||||||| |||    
T  33282826 gacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattcaagattctctcagaagacaaatcaccactttgtcctgtc 33282925  T
Q  113 aaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaacca 212  Q
    ||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33282926 aaactagcaccgatctcattgttctctggaacagctctatcattgtcacctatttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaacca 33283025  T
Q  213 tgtatatgtgtgttactgc 231  Q
    |||| |||| |||||||||    
T  33283026 tgtacatgtatgttactgc 33283044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 33260530 - 33260681
Alignment:
Q  18 gacatcactaattcagtcaagcaagcatgatttaaaaatgaattgag-----cctttattcaagattttctcagaagacaaatcaccgctttgtccagtc 112  Q
    |||| |||| ||||| ||||||||||| ||||| |||||||||| ||     ||||||||||||||| ||||||||||||||||||| |||||||| |||    
T  33260530 gacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattcaagattctctcagaagacaaatcaccactttgtcctgtc 33260629  T
Q  113 aaactagcagcgatctcattgttctctggaacagctccagcattgtcaccta 164  Q
    |||||||||  |||||||||||||||||||||||||||| ||||||||||||    
T  33260630 aaactagcactgatctcattgttctctggaacagctccatcattgtcaccta 33260681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 33416915 - 33417051
Alignment:
Q  65 cctttattcaagattttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcaccta 164  Q
    |||||||||||| ||| ||| |  || ||||||||  |||||||||||||| ||||| | |||||||||||||||||||||||| || | |||||| |||    
T  33416915 cctttattcaagctttcctcgggggataaatcaccattttgtccagtcaaattagcatcaatctcattgttctctggaacagctgcaacgttgtcatcta 33417014  T
Q  165 tttgaaatgcaaaggaaatattattcggtaagttaat 201  Q
    ||||||||||||| ||||||||||| | |||||||||    
T  33417015 tttgaaatgcaaaagaaatattatttgttaagttaat 33417051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 33260964 - 33261029
Alignment:
Q  166 ttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgtatatgtgtgttactgc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  33260964 ttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaaccatgtacatgtatgttactgc 33261029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 189
Target Start/End: Original strand, 33281666 - 33281772
Alignment:
Q  83 tcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaa 182  Q
    |||| |||||||||| | ||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||| ||| ||||||   ||||||||    
T  33281666 tcaggagacaaatcatcactttgtccactcaaactagcatcgatctcattgttatctggaacagcttcaacattgtcatctacttgaaacagaaaggaaa 33281765  T
Q  183 tattatt 189  Q
    |||||||    
T  33281766 tattatt 33281772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 33397402 - 33397512
Alignment:
Q  82 ctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaa 181  Q
    ||||| |||||||||| | ||||||||| ||||||||||| | ||||||||||| ||| ||||| || || |||||||| ||| |||||| | |||||||    
T  33397402 ctcaggagacaaatcatcactttgtccactcaaactagcatcaatctcattgttatctagaacatcttcaacattgtcatctacttgaaacggaaaggaa 33397501  T
Q  182 atattattcgg 192  Q
    |||||||||||    
T  33397502 atattattcgg 33397512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 192
Target Start/End: Original strand, 33408324 - 33408423
Alignment:
Q  93 aatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcgg 192  Q
    ||||||| |||||||| | |||||||||| | ||||||||||| ||| ||||| || || |||||||| ||| |||||| | ||||||||||||||||||    
T  33408324 aatcaccactttgtccggccaaactagcatcaatctcattgttatctagaacatcttcaacattgtcatctacttgaaacggaaaggaaatattattcgg 33408423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 11426 - 11248
Alignment:
Q  18 gacatcactaattcagtcaagcaagcatgatttaaaaatgaattgag-----cctttattcaagattttctcagaagacaaatcaccgctttgtccagtc 112  Q
    |||| |||| ||||| ||||||||||| ||||| |||||||||| ||     ||||||||||||||| ||||||||||||||||||| |||||||| |||    
T  11426 gacaacactgattcaatcaagcaagcaggatttgaaaatgaattaagcataacctttattcaagattctctcagaagacaaatcaccactttgtcctgtc 11327  T
Q  113 aaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcg 191  Q
    ||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  11326 aaactagcaccgatctcattgttctctggaacagctctatcattgtcacctatttgaaatgcaaaggaaatattattcg 11248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 4586 - 4800
Alignment:
Q  18 gacatcactaattcagtcaagcaagcatgatttaaaaatgaattgagc-----ctttattcaagattttctcagaagacaaatcaccgctttgtccagtc 112  Q
    |||| |||| ||||| ||||||||||| ||||| |||||| ||| |||     || ||||||||||| ||||||||||||||||||| |||||||| |||    
T  4586 gacaacactgattcaatcaagcaagcaggatttgaaaatgcattaagcataacctatattcaagattctctcagaagacaaatcaccactttgtcctgtc 4685  T
Q  113 aaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaatattattcggtaagttaatcggaaaaacca 212  Q
    ||||||||| ||||||||||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  4686 aaactagcaccgatctcattgttctctggaac----ccatcattgtcacctatttgaaatgcaaaggaaatattattcggtaagtttttcggataaacca 4781  T
Q  213 tgtatatgtgtgttactgc 231  Q
    |||  |||| |||||||||    
T  4782 tgtgcatgtatgttactgc 4800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 12586 - 12480
Alignment:
Q  83 tcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttgaaatgcaaaggaaa 182  Q
    |||| |||||||||| | ||||||||| ||||||||||| ||||||||||||| |||||||||||| || |||||||| ||| ||||||   ||||||||    
T  12586 tcaggagacaaatcatcactttgtccactcaaactagcatcgatctcattgttatctggaacagcttcaacattgtcatctacttgaaacagaaaggaaa 12487  T
Q  183 tattatt 189  Q
    |||||||    
T  12486 tattatt 12480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 194
Target Start/End: Complemental strand, 17442845 - 17442721
Alignment:
Q  70 attcaagattttctcagaagacaaatcaccgctttgtccagtcaaactagcagcgatctcattgttctctggaacagctccagcattgtcacctatttga 169  Q
    ||||||| || |||||| |||||||||| | ||||||||| ||||||||||| | |||| |||||||||| |||||||| || |||||||| ||| ||||    
T  17442845 attcaagcttctctcaggagacaaatcatcactttgtccactcaaactagcatcaatcttattgttctctagaacagcttcaacattgtcatctaattga 17442746  T
Q  170 aatgcaaaggaaatattattcggta 194  Q
    |||| ||||||||||||||| ||||    
T  17442745 aatggaaaggaaatattatttggta 17442721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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