View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_326 (Length: 251)

Name: NF11737A_low_326
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_326
NF11737A_low_326
[»] chr7 (10 HSPs)
chr7 (20-250)||(1595498-1595728)
chr7 (20-250)||(1541958-1542188)
chr7 (45-153)||(1105427-1105535)
chr7 (41-250)||(1557902-1558105)
chr7 (41-154)||(1603846-1603962)
chr7 (32-126)||(3956074-3956168)
chr7 (193-250)||(1604001-1604058)
chr7 (45-94)||(1551375-1551424)
chr7 (41-142)||(2329174-2329275)
chr7 (41-142)||(2337073-2337174)
[»] chr8 (6 HSPs)
chr8 (45-250)||(18749654-18749853)
chr8 (45-250)||(18724002-18724201)
chr8 (41-153)||(18739865-18739977)
chr8 (41-153)||(18744829-18744941)
chr8 (197-250)||(18739729-18739782)
chr8 (197-250)||(18744693-18744746)
[»] scaffold0491 (3 HSPs)
scaffold0491 (45-250)||(6495-6694)
scaffold0491 (41-153)||(1744-1856)
scaffold0491 (197-250)||(1608-1661)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 1595498 - 1595728
Alignment:
Q  20 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1595498 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgtctattatgtggacatttcatacaa 1595597  T
Q  120 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||||  ||||||||||||    
T  1595598 ttgtttggagggtccctttccaagttgtcttcagcttaacacaacaacaagggaaaattctgatgtatgttcatttagcaaattccagccttggtcacca 1595697  T
Q  220 cacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||||||||||||||||||||||||    
T  1595698 cacaagaaaaataataaattaaagcacattg 1595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 1542188 - 1541958
Alignment:
Q  20 atattgtctacatttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaa 119  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| | ||||||||||||||||||||||    
T  1542188 atattgactacatttacaaccttaatttaagcaataataatctcactggaacaattccccaatctctctgtgatgtcaattatgtggacatttcatacaa 1542089  T
Q  120 ttgtttggagggtccccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcacca 219  Q
    |||||||||||||||| |||||| ||||| |   ||| | |||||||  || ||||| ||||||| |||| | |||||||||||||  ||||||||||||    
T  1542088 ttgtttggagggtcccattccaaattgtcctggtctttatacaacaaacagcgaaaactatgatgtatgtccatttaaccaattccagccttggtcacca 1541989  T
Q  220 cacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||||||||||||||||||||||||    
T  1541988 cacaagaaaaataataaattaaagcacattg 1541958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 1105427 - 1105535
Alignment:
Q  45 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |    
T  1105427 tttaagcaataataatctcactggaacaattccccaatctctctgtaatgtcgattatgtggacatttcatacaattgtttggagggtcccattccaaat 1105526  T
Q  145 tgtcttcag 153  Q
    |||||||||    
T  1105527 tgtcttcag 1105535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 1558105 - 1557902
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcct------attatgtggacatttcatacaattgtttggagggtcc 134  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||   |      |||||||||||||||||||||||||||||||||||||    
T  1558105 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatttattcaattattatgtggacatttcatacaattgtttggagggtcc 1558006  T
Q  135 ccttccaagttgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataat 234  Q
    | |||||| ||||||| | | ||             |||||||| ||||| |||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  1558005 cattccaaattgtcttgatcatat------------ggaaaattctgatgtatgttcatttaacaaattccagccttggtcaccacacaagaaaaataat 1557918  T
Q  235 aaattaaagcacattg 250  Q
    ||||||||||||||||    
T  1557917 aaattaaagcacattg 1557902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 1603846 - 1603962
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcc---tattatgtggacatttcatacaattgtttggagggtcccct 137  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||  |   |||||||||||||||||||||||||||||||||| |||| |    
T  1603846 ttaatttaagcaataataatctctctggaacaattccccaatctctctgtaatttctattattatgtggacatttcatacaattgtttggaggatcccat 1603945  T
Q  138 tccaagttgtcttcagc 154  Q
    ||||| |||||||||||    
T  1603946 tccaaattgtcttcagc 1603962  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 3956168 - 3956074
Alignment:
Q  32 tttacagatttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttg 126  Q
    |||||| | |||||||||| ||||||||||||| ||| || || |||||||||||||||||||  | |||| |||||||||| ||||||||||||    
T  3956168 tttacaaacttaatttaagtaataataatctcagtggaacgataccccaatctctctgtaatgttttttatctggacatttcttacaattgtttg 3956074  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 1604001 - 1604058
Alignment:
Q  193 tttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||||||  |||||| ||  ||||||||||||||| ||||||||||||||||    
T  1604001 tttaaccaattccatccttggccaatacacaagaaaaataaaaaattaaagcacattg 1604058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 1551424 - 1551375
Alignment:
Q  45 tttaagcaataataatctcactggcacaattccccaatctctctgtaatg 94  Q
    ||||||| |||||||||||||||| ||||||||||| ||| | |||||||    
T  1551424 tttaagccataataatctcactggaacaattccccattctatttgtaatg 1551375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 2329174 - 2329275
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 140  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2329174 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2329273  T
Q  141 aa 142  Q
    ||    
T  2329274 aa 2329275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 2337073 - 2337174
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 140  Q
    |||||||||| ||||||||||| || ||     ||||||||||||| ||||||| | |||||||||||||||| | ||||  |||  ||||||| |||||    
T  2337073 ttaatttaaggaataataatcttacaggagtgtttccccaatctctttgtaatgtcaattatgtggacatttccttcaatcatttaaagggtcctcttcc 2337172  T
Q  141 aa 142  Q
    ||    
T  2337173 aa 2337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 18749853 - 18749654
Alignment:
Q  45 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 144  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||| |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18749853 tttaagaaataataatctcactggaacaattccccaatctctctgcaatgtcatttatgtggacatttcatacaattgtttgaagggtcccattccaatt 18749754  T
Q  145 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 244  Q
    |||||||||      ||||| |  | |||||||| ||||  |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18749753 tgtcttcag------acaacgaagatggaaaattctgatatatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18749660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 18724201 - 18724002
Alignment:
Q  45 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 144  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  18724201 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 18724102  T
Q  145 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 244  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  18724101 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 18724008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 18739977 - 18739865
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18739977 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18739878  T
Q  141 aagttgtcttcag 153  Q
    || ||||||||||    
T  18739877 aaattgtcttcag 18739865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 18744941 - 18744829
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  18744941 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 18744842  T
Q  141 aagttgtcttcag 153  Q
    || ||||||||||    
T  18744841 aaattgtcttcag 18744829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18739782 - 18739729
Alignment:
Q  197 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18739782 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18739729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 18744746 - 18744693
Alignment:
Q  197 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  18744746 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 18744693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 45 - 250
Target Start/End: Complemental strand, 6694 - 6495
Alignment:
Q  45 tttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttccaagt 144  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||| | |  |||||||||||||||||||||||||||| |||||||| |||||| |    
T  6694 tttaagaaataataatctcactggaacaattccccaatctctctgtaaagtcatttatgtggacatttcatacaattgtttgaagggtcccattccaaat 6595  T
Q  145 tgtcttcagcttaacacaacaacaagggaaaattatgatggatgttcgtttaaccaattcccaccttggtcaccacacaagaaaaataataaattaaagc 244  Q
    |||||||      | ||||| |  |  ||||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  6594 tgtcttc------atacaacgaagatcgaaaattctgatgtatgttcatttaaccagttccaaccttggtcaccacacaagaaaaataataaattaaagc 6501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 41 - 153
Target Start/End: Complemental strand, 1856 - 1744
Alignment:
Q  41 ttaatttaagcaataataatctcactggcacaattccccaatctctctgtaatgcctattatgtggacatttcatacaattgtttggagggtccccttcc 140  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  1856 ttaatttaagcaataataatctcactggaacaattccccaatctctctgtaatgtctattatgtggacatttcatacaattgtttggagggtcccattcc 1757  T
Q  141 aagttgtcttcag 153  Q
    || ||||||||||    
T  1756 aaattgtcttcag 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 1661 - 1608
Alignment:
Q  197 accaattcccaccttggtcaccacacaagaaaaataataaattaaagcacattg 250  Q
    |||||||||  |||||| || |||||||||||||||| ||||||||||||||||    
T  1661 accaattccatccttggccaacacacaagaaaaataaaaaattaaagcacattg 1608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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