View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_327 (Length: 251)
Name: NF11737A_low_327
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_327 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 32287893 - 32288123
Alignment:
| Q |
2 |
caatctgttgcgcaaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcc |
101 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32287893 |
caatctgttgcgcaaaaggcgccaaacacaaatagacaccatgaaaggaacatgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcc |
32287992 |
T |
|
| Q |
102 |
tgatgggg-agcaactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacat |
200 |
Q |
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|||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32287993 |
tgatgggggagcaactgataggcaccacaaaaagtgtaacactcaccttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacat |
32288092 |
T |
|
| Q |
201 |
caagtaaaatagatatacactcacccccgat |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
32288093 |
caagtaaaatagatatacactcacccccgat |
32288123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19636729 - 19636557
Alignment:
| Q |
1 |
acaatctgttgcgcaaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtat-ccaagtgatgatcct |
99 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||| | || ||||| | ||||| |||||| || |||||| |||| ||||||||||||||| |
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| T |
19636729 |
acaatctattgcgcaaaagacaccaagcacaaatagacacattcaatggaacctatttataccaaacgctgcccaagatcgtaaaccaagtgatgatcct |
19636630 |
T |
|
| Q |
100 |
cctgatggg-gagcaactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattc |
171 |
Q |
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| T |
19636629 |
cctgatgagtgagcaactaatagacaccatgaacagtgtaaccttcgccttgattgggaagccacttccattc |
19636557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 152
Target Start/End: Original strand, 32287170 - 32287285
Alignment:
| Q |
36 |
gacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcctgatggg-gagcaactgataggcaccataaagag |
134 |
Q |
| |
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|||||| ||||| ||| |||||||| ||||| |||| ||||| ||||| |||||||||||||| |||||| |||||||||||||||| |||||| || |
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| T |
32287170 |
gacaccttgaaatgaatctgtttatgccaaacattgttcaagatcgtattcaagtgatgatcct--tgatggacgagcaactgataggcatcataaacag |
32287267 |
T |
|
| Q |
135 |
tgtaacactcactttgat |
152 |
Q |
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|||||||||||| ||||| |
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| T |
32287268 |
tgtaacactcaccttgat |
32287285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 26487575 - 26487788
Alignment:
| Q |
14 |
caaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcctgatggg-gagc |
112 |
Q |
| |
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||||||| ||||| ||||||||||||| | || | ||| ||||||||| ||||||||||||||||||||||||| |||||||||| |||||| | |||| |
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| T |
26487575 |
caaaaggcgccaagtacaaatagacaccttcaacgtaacctgtttatgtgaaacgttgtccaagaccgtatccaattgatgatccttctgatgagtgagc |
26487674 |
T |
|
| Q |
113 |
aactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacatcaagtaaaatag |
212 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||| |||||||||||||| |
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| T |
26487675 |
aactaataggcaccacgaagagtgtaaccatcaccttgattgggaatccacttccattcatctagagtattagcttgtaaaatgatatcaagtaaaatag |
26487774 |
T |
|
| Q |
213 |
atatacactcaccc |
226 |
Q |
| |
|
||||||||||| |
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|
| T |
26487775 |
ccctacactcaccc |
26487788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 47163280 - 47163071
Alignment:
| Q |
3 |
aatctgttgcgcaaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcct |
102 |
Q |
| |
|
||||||||| |||||||| | ||| ||||||||||| | | || | ||| ||||| | ||||| | ||||||||||||||||||||||||||||||| |
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| T |
47163280 |
aatctgttgtgcaaaaggcactaaatacaaatagacatcttcaatgaaacctgtttgtcccaaactctctccaagaccgtatccaagtgatgatcctcct |
47163181 |
T |
|
| Q |
103 |
gatg-gggagcaactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacatc |
201 |
Q |
| |
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|||| | |||||| ||||||||| || || | |||||| || | |||||||||||| ||| |||||||||| |||||||||||||| ||||| ||| |
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| T |
47163180 |
gatgagtgagcaattgataggcatcaccaacaatgtaaccatctccttgattgggaag-cacctccattcatctagactattaacttggaaaatttaatc |
47163082 |
T |
|
| Q |
202 |
aagtaaaatag |
212 |
Q |
| |
|
||||||||||| |
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|
| T |
47163081 |
aagtaaaatag |
47163071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 13547075 - 13546851
Alignment:
| Q |
3 |
aatctgttgcgcaaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcct |
102 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||| | || |||| ||||||| ||||||||||||||||||||||||||||||||||| | || |
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|
| T |
13547075 |
aatctgttgcacaaaaggcgccaagcacaaatagacacattcaattgaacatgtttataccaaacgttgtccaagaccgtatccaagtgatgatctttct |
13546976 |
T |
|
| Q |
103 |
gatg-gggagcaactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacatc |
201 |
Q |
| |
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|||| | ||||||||||||||||||| || | |||||| || |||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
13546975 |
gatgagtgagcaactgataggcaccacgaacaatgtaaccagtaccttgattgggaagccacttccattcatccagagtattaacccgtaaaatgacatc |
13546876 |
T |
|
| Q |
202 |
aagtaaaatagatatacactcaccc |
226 |
Q |
| |
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||||||||||| ||||||||||| |
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|
| T |
13546875 |
aagtaaaatagccctacactcaccc |
13546851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 212
Target Start/End: Original strand, 8340561 - 8340771
Alignment:
| Q |
3 |
aatctgttgcgcaaaaggtgccaaacacaaatagacaccatgaaaggaacgtgtttatgtcaaacgttgtccaagaccgtatccaagtgatgatcctcct |
102 |
Q |
| |
|
|||||||||||||||||| | || ||||||| |||||| | || ||||| ||||| | | || | ||||| |||| ||||||| ||||||||| | |
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|
| T |
8340561 |
aatctgttgcgcaaaaggcgtcagtcacaaattgacaccttcaatggaacatgtttgtaccggacactctccaaaaccgcatccaaggtatgatcctcat |
8340660 |
T |
|
| Q |
103 |
gatggg-gagcaactgataggcaccataaagagtgtaacactcactttgattgggaagtcacttccattcatccagactattaacttgtaaaatgacatc |
201 |
Q |
| |
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|||| ||||||||| ||| ||| | || |||||||| || | |||||||||||| |||||||||||||||| | ||||||| |||||| |||| | |
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|
| T |
8340661 |
gatgaatgagcaactggtagacacaaggaacagtgtaaccatctccttgattgggaagccacttccattcatccaaattattaacctgtaaagagacacc |
8340760 |
T |
|
| Q |
202 |
aagtaaaatag |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
8340761 |
aagtaaaatag |
8340771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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