View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_33 (Length: 453)

Name: NF11737A_low_33
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_33
NF11737A_low_33
[»] chr7 (5 HSPs)
chr7 (16-440)||(45341146-45341568)
chr7 (217-357)||(4548267-4548409)
chr7 (188-372)||(6011403-6011586)
chr7 (296-359)||(11622442-11622506)
chr7 (216-304)||(19432388-19432474)
[»] chr3 (5 HSPs)
chr3 (152-362)||(19800545-19800754)
chr3 (17-145)||(14258889-14259023)
chr3 (22-118)||(16022869-16022971)
chr3 (152-303)||(16018989-16019136)
chr3 (241-300)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (152-373)||(24819942-24820160)
chr8 (150-304)||(15061971-15062124)
chr8 (17-141)||(15061753-15061884)
chr8 (217-369)||(15662802-15662954)
chr8 (154-296)||(16723492-16723632)
chr8 (206-323)||(15550776-15550892)
chr8 (254-375)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (152-318)||(16673431-16673597)
chr4 (15-150)||(16673668-16673810)
chr4 (60-145)||(41806043-41806127)
chr4 (190-370)||(18448904-18449084)
chr4 (217-266)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (150-368)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (155-361)||(24134-24339)
[»] scaffold0338 (2 HSPs)
scaffold0338 (150-303)||(18545-18696)
scaffold0338 (18-139)||(18789-18916)
[»] chr5 (2 HSPs)
chr5 (150-317)||(26058031-26058196)
chr5 (190-303)||(19079584-19079696)
[»] chr6 (6 HSPs)
chr6 (60-145)||(15483019-15483104)
chr6 (15-143)||(23846374-23846508)
chr6 (150-364)||(13123109-13123323)
chr6 (155-361)||(12331737-12331940)
chr6 (152-302)||(23846137-23846286)
chr6 (155-234)||(20891709-20891788)
[»] scaffold0100 (1 HSPs)
scaffold0100 (17-145)||(37884-38019)
[»] scaffold0001 (1 HSPs)
scaffold0001 (386-431)||(420420-420465)
[»] chr2 (3 HSPs)
chr2 (15-145)||(16592441-16592577)
chr2 (190-323)||(28579640-28579771)
chr2 (150-204)||(16592297-16592351)
[»] chr1 (1 HSPs)
chr1 (44-119)||(11843309-11843384)
[»] scaffold0086 (1 HSPs)
scaffold0086 (218-300)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Original strand, 45341146 - 45341568
Alignment:
Q  16 catcataaatatctctgcaacatataacaaatatcaaaaaccatgtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaag 115  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||     
T  45341146 catcataaatatctcagcaacatataacaaatatcaaaaaccatgtctcataatacatcacggacaatatctaaaatctcatacataaataaaaaacaat 45341245  T
Q  116 tctcggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaa 215  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  45341246 tc--ggcaataatataaatacatagcataagtcccaagcactcacaagcaatacgaactcaaacttgcacgtcgtctacaccatttataaaaatggcgaa 45341343  T
Q  216 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341344 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacac 45341443  T
Q  316 atgttcattatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatcaattttcatttcaacatcaagaggtcatcacatcac 415  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45341444 atgttcatcatcccataatactaacatcatgtgaatattatcttaaaatcaatcataacacatcaattttcatttcaacatcaagaggtcatcacatcac 45341543  T
Q  416 caacaattaaattcatgatgtccat 440  Q
    ||||||||||||||||| |||||||    
T  45341544 caacaattaaattcatggtgtccat 45341568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 217 - 357
Target Start/End: Original strand, 4548267 - 4548409
Alignment:
Q  217 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacat----ata 312  Q
    |||||||||||||||| ||| |||||| | ||| |||| ||||||||| |||||||||||||||| ||||||||||||||||||  |||| ||    |||    
T  4548267 cggtcaaccaaacgactatt-aggggtgagataatattccacataatacaatataatcaaagaaa-agcattcaaggatttcaatcatcatatatagata 4548364  T
Q  313 cacatgttcattatcccataatactaacatcatgtgaatattatc 357  Q
     ||||| ||| ||||| |||||||| |||||||||||||||||||    
T  4548365 tacatgctcaatatcctataatactgacatcatgtgaatattatc 4548409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 372
Target Start/End: Complemental strand, 6011586 - 6011403
Alignment:
Q  188 catctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcat 287  Q
    |||||||||||||| || |||||| ||  |||||||||||||||| | |||||||||| ||| || ||||||||| || |||||| || ||| ||| |||    
T  6011586 catctacaccatttttagaaatggtgaggcggtcaaccaaacgacaactgaggggttagataata-ttcacataaaaagatataagcatagatataacat 6011488  T
Q  288 tcaaggatttcaagtatcacatatacacatgttcattatcccat-aatactaacatcatgtgaatattatcttaaaatcaatcata 372  Q
    || | || ||||  ||||||||| | |||| ||||| || || | |||||||||||| | ||||||| ||||| ||  ||||||||    
T  6011487 tctacga-ttcacatatcacatacatacatattcatcattccttgaatactaacatcttatgaatatcatcttcaatccaatcata 6011403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 11622506 - 11622442
Alignment:
Q  296 ttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatattatctt 359  Q
    ||||||||||||||||| |||||||||| | ||| | |||||||||||||| | |||||||||||    
T  11622506 ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcatataaatattatctt 11622442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 19432474 - 19432388
Alignment:
Q  216 acggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 304  Q
    ||||||||||||||||| |  | || |||| ||| |||| || ||||||||||||||||||  ||||||||||||| ||||||||||||    
T  19432474 acggtcaaccaaacgactac-gtggagttagataatattccatataataaaatataatcaat-aaatagcattcaatgatttcaagtat 19432388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 152 - 362
Target Start/End: Original strand, 19800545 - 19800754
Alignment:
Q  152 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 251  Q
    |||||| ||||||||| | |||||||||||||||||| | ||||||||| |||||||||||||  | ||||||||||| |||| ||  |||| | ||| |    
T  19800545 agcacttacaagcaatgcaaactcaaacctgcacgtcgtgtacaccatt-ataaaaatggcgaggcagtcaaccaaacaaccactggtgggtgagataat 19800643  T
Q  252 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 351  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||||||| ||||| |||| |||| | ||||||| ||||||| ||||    
T  19800644 attccacataataaaatctaatcaaagaaatagcattcaaggatttcaaataccacatatatacatgctcatcatcctagaatactatcatcatgcgaat 19800743  T
Q  352 attatcttaaa 362  Q
    |||||| ||||    
T  19800744 attatcataaa 19800754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 14258889 - 14259023
Alignment:
Q  17 atcataaatatctctgcaacatataacaaatatcaaaaaccatgtct-------cataatacatcacgaacaatatctcaaatctcatacataaataaac 109  Q
    ||||| |||||||||||||||| |||||||| |||| ||||||||||       ||||||||||||| || ||||||||||||||||||||| |||| ||    
T  14258889 atcatgaatatctctgcaacatgtaacaaatctcaacaaccatgtctcaggtctcataatacatcaccaaaaatatctcaaatctcatacat-aatagac 14258987  T
Q  110 aacaagtctcggcaataatataaatacatagcataa 145  Q
    ||||||||||  |||||||||||||||||| |||||    
T  14258988 aacaagtctcatcaataatataaatacataacataa 14259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 16022971 - 16022869
Alignment:
Q  22 aaatatctctgcaacatataacaaatatcaaaaaccatgtct-------cataatacatcacgaacaatatctcaaatctcatacataaataaacaacaa 114  Q
    ||||||||| |||||||||||||||| |||| ||||||||||       ||||||||| ||| ||||||||||||||||| | |||| |||| |||||||    
T  16022971 aaatatctcagcaacatataacaaatctcaacaaccatgtcttaggtctcataatacaacaccaacaatatctcaaatcttaaacat-aatagacaacaa 16022873  T
Q  115 gtct 118  Q
    ||||    
T  16022872 gtct 16022869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 303
Target Start/End: Complemental strand, 16019136 - 16018989
Alignment:
Q  152 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 251  Q
    ||||||||||| ||| | |||||||||| |||||||| || |||||||||||| ||||||  |   ||||||||||| ||||||||  || ||| ||| |    
T  16019136 agcactcacaaacaacaagaactcaaacatgcacgtcgtccacaccatttatacaaatgggtaggtggtcaaccaaatgaccattg-tggtttatataat 16019038  T
Q  252 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 303  Q
    ||| || ||||||||| ||   || | |||||||||||||||||||||||||    
T  16019037 attccatataataaaacat--gcata-aaatagcattcaaggatttcaagta 16018989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 25387088 - 25387029
Alignment:
Q  241 ggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 300  Q
    |||||||||  |||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  25387088 ggttaaataacatttcacataataaaatataataaaggaaataacattcaaagatttcaa 25387029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 373
Target Start/End: Complemental strand, 24820160 - 24819942
Alignment:
Q  152 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 251  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||||| | | ||| |||| ||| |    
T  24820160 agcactcacaagcaatacga-ctcaaacctgcacgtcatctacaccatttatacaaatggtgaggcggtcaaccaaacgacaact-aggagttagataat 24820063  T
Q  252 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtgaat 351  Q
    ||| |||||| ||||||| || || | |||||| |||||||||||||||  |||||||||| ||||| |||| |||| | |||||||||||| | |||||    
T  24820062 attccacatagtaaaataaaagcaca-aaatagaattcaaggatttcaaacatcacatatatacatgctcatcatcctagaatactaacatcgtatgaat 24819964  T
Q  352 attatcttaaaatcaatcataa 373  Q
    ||| || |||||||||| ||||    
T  24819963 attgtcataaaatcaatgataa 24819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 150 - 304
Target Start/End: Original strand, 15061971 - 15062124
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 249  Q
    ||||||||||||||||||| |||||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||  ||||| |||    
T  15061971 caagcactcacaagcaataggaactcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactga-aggttagata 15062069  T
Q  250 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtat 304  Q
     |||| |||||||||||||||||||||  ||||  || |||||||||||||||||    
T  15062070 atattccacataataaaatataatcaagtaaatgacagtcaaggatttcaagtat 15062124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 15061753 - 15061884
Alignment:
Q  17 atcataaatatctctgcaacatataacaaatatcaaaaaccatgt-------ctcataatacatcacgaacaatatctcaaatctcatacataaataaac 109  Q
    |||| ||||||||| |||||||||||||||| |||| ||||||||       ||||||||||||||  ||||||||||||||| ||| ||||||||| ||    
T  15061753 atcaaaaatatctcagcaacatataacaaatctcaacaaccatgtatcaggtctcataatacatcattaacaatatctcaaatttcagacataaatagac 15061852  T
Q  110 aacaagtctcggcaataatataaatacatagc 141  Q
    | ||||||||  |||||| |||||||||||||    
T  15061853 agcaagtctcatcaataaaataaatacatagc 15061884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 15662954 - 15662802
Alignment:
Q  217 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacaca 316  Q
    |||||||||||||||||| |  ||||||| ||| |||| ||||||| || ||| || || | ||||||||||| ||  |||||||||||||||||| |||    
T  15662954 cggtcaaccaaacgaccactagggggttagataatatt-cacataaaaagatacaagcacaaaaatagcattctagattttcaagtatcacatatataca 15662856  T
Q  317 tgttcatta-tcccataatactaacatcatgtgaatattatcttaaaatcaatc 369  Q
    || ||| || ||| | |||||||||||| | ||||||||||||| || ||||||    
T  15662855 tgctcaatattcctagaatactaacatcgtatgaatattatcttcaattcaatc 15662802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 296
Target Start/End: Original strand, 16723492 - 16723632
Alignment:
Q  154 cactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtat 253  Q
    ||||||||||||||||| ||||||  ||||||||  ||||||||||| ||| ||||||  |  |||| || |||||||||| |||  ||||| ||| |||    
T  16723492 cactcacaagcaatacggactcaagtctgcacgttgtctacaccattcatacaaatgggtaggcggtaaatcaaacgaccaatga--ggttagataatat 16723589  T
Q  254 ttcacataataaaatataatcaaagaaatagcattcaaggatt 296  Q
    |||| || |||||||| |||||||| ||||| |||||| ||||    
T  16723590 ttcatatgataaaataaaatcaaagtaatagaattcaatgatt 16723632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 15550892 - 15550776
Alignment:
Q  206 aaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatc 305  Q
    |||||| || || |||||||||||||||| | || ||||| ||| |||| ||||||| || ||||||||| | ||||||||||| |  |||||||| |||    
T  15550892 aaatggtgagacagtcaaccaaacgaccactaagaggttatataatatt-cacataaaaatatataatcacaaaaatagcattctataatttcaagaatc 15550794  T
Q  306 acatatacacatgttcat 323  Q
    ||||||| ||||| ||||    
T  15550793 acatatatacatgctcat 15550776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 375
Target Start/End: Complemental strand, 22502125 - 22502004
Alignment:
Q  254 ttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaata 352  Q
    ||||||||| || |||||| || | | ||| ||||| |||||| ||| ||||||||||| ||||| |||| || || | ||||||| |||||  ||||||    
T  22502125 ttcacataaaaatatataagcacaaatataacattctaggatt-caaatatcacatatatacatgctcatcattcctagaatactaccatcacatgaata 22502027  T
Q  353 ttatcttaaaatcaatcataaca 375  Q
    ||||||| || ||||||||||||    
T  22502026 ttatctttaattcaatcataaca 22502004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 152 - 318
Target Start/End: Complemental strand, 16673597 - 16673431
Alignment:
Q  152 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 251  Q
    |||||||||||| |||||||||||||||||||| ||  |||||||||||| || |||| | ||   | ||||||||||||||| || |  |||| ||| |    
T  16673597 agcactcacaagtaatacgaactcaaacctgcatgttgtctacaccatttttagaaatagtgaggtgctcaaccaaacgaccactgggatgttagataat 16673498  T
Q  252 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatg 318  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  16673497 attccacataataaaatttaatcaaagaaatagcattcaaggatttcaagtatcaaatatatacatg 16673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 15 - 150
Target Start/End: Complemental strand, 16673810 - 16673668
Alignment:
Q  15 acatcataaatatctctgcaacatataacaaatatcaaaaaccatgtctca-------taatacatcacgaacaatatctcaaatctcatacataaataa 107  Q
    ||||||||||||||||  |  |||||||| ||| |||||||||||||||||       ||||||||||| ||||||||||||||||| | ||||||||||    
T  16673810 acatcataaatatctcaaccgcatataacgaatctcaaaaaccatgtctcaggtctcataatacatcaccaacaatatctcaaatcttagacataaataa 16673711  T
Q  108 acaacaagtctcggcaataatataaatacatagcataagtccc 150  Q
    ||||||||| |  ||||||| ||||||||| | ||||||||||    
T  16673710 acaacaagttttagcaataacataaatacacaacataagtccc 16673668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 41806043 - 41806127
Alignment:
Q  60 gtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 145  Q
    ||||||||||||| ||| || |||||||||||||||| |||| |||| | |||||||||||||| |||||||||| ||||||||||    
T  41806043 gtctcataatacaacaccaataatatctcaaatctcagacat-aatagataacaagtctcggcagtaatataaatgcatagcataa 41806127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 370
Target Start/End: Original strand, 18448904 - 18449084
Alignment:
Q  190 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 289  Q
    |||||||||||| || |||||| ||  |||||||| ||||||||| |  ||||||| ||| |||| ||||||| ||  ||||| || | || |||||||     
T  18448904 tctacaccatttttataaatggtgaggcggtcaactaaacgaccactagggggttagataatatt-cacataaaaacgtataagcacaaaagtagcatta 18449002  T
Q  290 aaggatttcaagtatcacatatacacatgttcattatccc-ataatactaacatcatgtgaatattatcttaaaatcaatca 370  Q
     || ||||||||||||||||||  |||||  || ||| |  | |||||||||||||||||||||||||||| || |||||||    
T  18449003 tagaatttcaagtatcacatatttacatgcacaatattcttacaatactaacatcatgtgaatattatcttcaactcaatca 18449084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 13933031 - 13933079
Alignment:
Q  217 cggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaa 266  Q
    |||||||||||||||||| || ||||||| ||| ||||||||||||||||    
T  13933031 cggtcaaccaaacgaccactg-ggggttagataatatttcacataataaa 13933079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 150 - 368
Target Start/End: Complemental strand, 71437 - 71223
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 249  Q
    ||||||||||||||||||| |||||  | | |||||  | |||||| |||||||| ||||||  |  |||||||||||||||||| |||||| ||| |||    
T  71437 caagcactcacaagcaataagaacttgatcatgcacaccgtctacaacatttatacaaatgggtaggcggtcaaccaaacgaccagtgaggg-ttagata 71339  T
Q  250 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcattatcccataatactaacatcatgtga 349  Q
     |||| |||||||||| ||||||||||||||   ||||||||| ||||||||||| ||||| | |||| ||||| |||| | ||||||||||||||| ||    
T  71338 atattccacataataagatataatcaaagaa---gcattcaagaatttcaagtattacatacatacatattcatcatcctagaatactaacatcatgcga 71242  T
Q  350 atattatcttaaaatcaat 368  Q
    |||||||| |||| |||||    
T  71241 atattatcctaaactcaat 71223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 155 - 361
Target Start/End: Complemental strand, 24339 - 24134
Alignment:
Q  155 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 254  Q
    |||||||| ||||| |  ||||| | |||||||| ||||||||||| ||| ||||||  |  ||||||||||||| |||| |||||| ||| |||  |||    
T  24339 actcacaaacaataagttctcaatcatgcacgtcgtctacaccattcatacaaatgggtaggcggtcaaccaaacaaccactgaggg-ttagataacatt 24241  T
Q  255 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 353  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||||||  || ||| |||| ||||| | ||| | ||||||||||||||||||||||    
T  24240 tcacataataaaatataatcata-aaataacattcaaggatttcaagtatagcacatatacatattcatcactcctagaatactaacatcatgtgaatat 24142  T
Q  354 tatcttaa 361  Q
    ||||||||    
T  24141 tatcttaa 24134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 18696 - 18545
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 249  Q
    |||||||||||||| |||| |||||||| | |||||| | | ||||||||| ||| ||||||  | ||||||||||||||||||| ||| |||||| |||    
T  18696 caagcactcacaagaaataagaactcaatcatgcacgccgtttacaccattcatacaaatgggtagacggtcaaccaaacgaccactga-gggttagata 18598  T
Q  250 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagta 303  Q
     |||| |||||||||||||||||||| | ||| |||||||||||||||||||||    
T  18597 atattccacataataaaatataatcata-aaacagcattcaaggatttcaagta 18545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 18916 - 18789
Alignment:
Q  18 tcataaatatctctgcaacatataacaaatatcaaaaaccat-------gtctcataatacatcacgaacaatatctcaaatctcatacataaataaaca 110  Q
    ||||||||||||| |||||||| ||||||| |||| ||||||       ||||||||||||||||| || ||| ||| |||| | | |||  |||| |||    
T  18916 tcataaatatctcagcaacataaaacaaatctcaacaaccatgtctaaggtctcataatacatcaccaaaaatgtcttaaatatgagaca-caatagaca 18818  T
Q  111 acaagtctcggcaataatataaatacata 139  Q
    |||||||||||||||||| | ||||||||    
T  18817 acaagtctcggcaataatgtcaatacata 18789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 150 - 317
Target Start/End: Original strand, 26058031 - 26058196
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 249  Q
    |||||||| | |||||||| |||||||| | |||||  | ||||||||||||||| ||||||  |  || ||||||||| ||||| | |||||||| |||    
T  26058031 caagcacttataagcaataagaactcaatcatgcactccgtctacaccatttatacaaatgggtaggcgatcaaccaaatgaccact-aggggttagata 26058129  T
Q  250 gtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacat 317  Q
     |||| |||||||||||||||||||| | ||||| |||||||||||||||||||| | | ||||||||    
T  26058130 atattccacataataaaatataatcata-aaatatcattcaaggatttcaagtattatacatacacat 26058196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 303
Target Start/End: Complemental strand, 19079696 - 19079584
Alignment:
Q  190 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 289  Q
    |||||||||||| ||||||||| ||  ||||||||||||| |||| || | ||||| |||  | ||||||||| || |||||| || ||||||||||||     
T  19079696 tctacaccatttttaaaaatggtgagccggtcaaccaaacaaccactgggaggttagataaca-ttcacataaaaagatataagcacagaaatagcatta 19079598  T
Q  290 aaggatttcaagta 303  Q
     ||||||| |||||    
T  19079597 taggatttaaagta 19079584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 15483104 - 15483019
Alignment:
Q  60 gtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctcggcaataatataaatacatagcataa 145  Q
    ||||||||||||||||| ||||||||||||||||||| |||||| || |||| ||||||| |||  || ||||||||||| |||||    
T  15483104 gtctcataatacatcaccaacaatatctcaaatctcaaacataactagacaataagtctcagcagcaacataaatacataacataa 15483019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 23846508 - 23846374
Alignment:
Q  15 acatcataaatatctctgcaacatataacaaatatcaaaaaccat-------gtctcataatacatcacgaacaatatctcaaatctcatacataaataa 107  Q
    ||||||||||||| ||  ||||||||||||||| |||| ||||||       ||||||||||| ||||| ||||||||||| || |||| |||||| |||    
T  23846508 acatcataaatatttcaacaacatataacaaatctcaacaaccatatcttaggtctcataatatatcaccaacaatatctccaacctcagacataattaa 23846409  T
Q  108 acaacaagtctcggcaataatataaatacatagcat 143  Q
    || |||||||||  ||||||||||||| ||||||||    
T  23846408 ac-acaagtctcaacaataatataaatgcatagcat 23846374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 150 - 364
Target Start/End: Complemental strand, 13123323 - 13123109
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaata 249  Q
    ||||||||||||||||||| ||| ||||   |||||| | ||||||||||| ||| ||||||  || ||| ||| ||||||| || ||| |||||| ||     
T  13123323 caagcactcacaagcaataagaaatcaattttgcacgccgtctacaccattcatacaaatgggtaagcggccaatcaaacgatcactga-gggttagatt 13123225  T
Q  250 gtatttcacataataaaatataatc-aaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgt 347  Q
     || ||||| ||||||||||||||| ||| ||||||||||||| |||||||| ||  ||| ||  ||||| |||| | ||  | ||||||||||| ||||    
T  13123224 ata-ttcacgtaataaaatataatcaaaataaatagcattcaatgatttcaattaatacacatgtacatgctcatcattcgtaaaatactaacataatgt 13123126  T
Q  348 gaatattatcttaaaat 364  Q
    |||||||||||| ||||    
T  13123125 gaatattatcttcaaat 13123109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 361
Target Start/End: Complemental strand, 12331940 - 12331737
Alignment:
Q  155 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatt 254  Q
    |||||||||||||| ||||| || | | || ||| ||||||||||| ||| ||||||  |  |||||||| ||||||||| |  ||||||| ||  ||||    
T  12331940 actcacaagcaataagaacttaatcatacatgtcgtctacaccattcatacaaatgggtaggcggtcaactaaacgaccact--ggggttagattatatt 12331843  T
Q  255 tcacataataaaatataatcaaagaaatagcattcaaggatttcaagtatcacatatacacatgttcatta-tcccataatactaacatcatgtgaatat 353  Q
     ||||||||||||||||| || | |||||| |||| |||||||  |||||  || ||| |||| ||||| | ||| | |||||||||||||| |||||||    
T  12331842 ccacataataaaatataaacata-aaatagaattctaggattt-tagtatagcacatatacatattcatcactcctagaatactaacatcatatgaatat 12331745  T
Q  354 tatcttaa 361  Q
    ||||||||    
T  12331744 tatcttaa 12331737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 302
Target Start/End: Complemental strand, 23846286 - 23846137
Alignment:
Q  152 agcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagt 251  Q
    ||||||||||| ||||| ||| |||||| |||| |  ||||||||||||| | ||||| |  |  |||| ||||||||||||| ||  |||| | ||| |    
T  23846286 agcactcacaatcaataagaaatcaaacatgcatgctatctacaccattttttaaaatagtaatgcggttaaccaaacgaccactggagggtgagataat 23846187  T
Q  252 atttcacataataaaatataatcaaagaaatagcattcaaggatttcaagt 302  Q
    ||||||||| ||||||||||| || | ||||| |||||| |||||||||||    
T  23846186 atttcacatgataaaatataaacata-aaataacattcatggatttcaagt 23846137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 20891709 - 20891788
Alignment:
Q  155 actcacaagcaatacgaactcaaacctgcacgtcatctacaccatttataaaaatggcgaaacggtcaaccaaacgacca 234  Q
    |||||||||||||| ||| |||| | |||||| | ||||||||||| ||| ||||||  |  ||||||||||||||||||    
T  20891709 actcacaagcaataagaaatcaatcatgcacgccgtctacaccattcatacaaatgggtaggcggtcaaccaaacgacca 20891788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 37884 - 38019
Alignment:
Q  17 atcataaatatctctgcaacatataacaaatatcaaaaaccatgtctcat-------aatacatcacgaacaatatctcaaatctcatacataaataaac 109  Q
    |||| ||||||||| ||||| ||||| |||| |||| |||||||||||||       |||||||||| ||||||||||||||||||| |||||| || ||    
T  37884 atcaaaaatatctcagcaacctataataaatctcaacaaccatgtctcatgtttcataatacatcaccaacaatatctcaaatctcaaacataagtagac 37983  T
Q  110 aacaagtctcggcaataatataaatacatagcataa 145  Q
     |||||||||  ||||||   ||||||||| |||||    
T  37984 gacaagtctcatcaataaagcaaatacataacataa 38019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 420420 - 420465
Alignment:
Q  386 catttcaacatcaagaggtcatcacatcaccaacaattaaattcat 431  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||    
T  420420 catttcaacatcaagaggtcatcacatcaccaataattaaattcat 420465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 16592577 - 16592441
Alignment:
Q  15 acatcataaatatctctgcaacatataacaaatatcaaaaaccatgtctc-------ataatacatcacgaacaatatctc-aaatctcatacataaata 106  Q
    |||||||||||||||| ||||||||| |||||| |||| |||||||||||       |||||||||||| ||| | ||||| |||||||| ||||||       
T  16592577 acatcataaatatctcagcaacatatgacaaatctcaacaaccatgtctcagatcttataatacatcaccaacgacatctcaaaatctcagacataa--t 16592480  T
Q  107 aacaacaagtctcggcaataatataaatacatagcataa 145  Q
    | ||||||||||| |||||||| |||||||||| |||||    
T  16592479 agcaacaagtctcagcaataatgtaaatacataacataa 16592441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 323
Target Start/End: Complemental strand, 28579771 - 28579640
Alignment:
Q  190 tctacaccatttataaaaatggcgaaacggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattc 289  Q
    ||||||| |||| || |||||| || | |||||||||||||||||||| ||||||| ||| || |||||| || || |||||| || | | ||||||||     
T  28579771 tctacactatttttacaaatggagagatggtcaaccaaacgaccattgtggggttagataata-ttcacacaaaaagatataagcacaaatatagcattt 28579673  T
Q  290 aaggatttcaagtatcacatatacacatgttcat 323  Q
     |||| ||||| ||||||||||| ||||| ||||    
T  28579672 tagga-ttcaaatatcacatatatacatgctcat 28579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 16592351 - 16592297
Alignment:
Q  150 caagcactcacaagcaatacgaactcaaacctgcacgtcatctacaccatttata 204  Q
    ||||||||||| ||||||| |||||||| |||||||| | ||| |||||||||||    
T  16592351 caagcactcactagcaataagaactcaatcctgcacgccgtctccaccatttata 16592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 11843309 - 11843384
Alignment:
Q  44 aaatatcaaaaaccatgtctcataatacatcacgaacaatatctcaaatctcatacataaataaacaacaagtctc 119  Q
    |||| |||| |||||||| |||||||||||||| ||  | |||||||||||||| ||||| | | |||||||||||    
T  11843309 aaatctcaacaaccatgtgtcataatacatcactaaataaatctcaaatctcatgcataagtgagcaacaagtctc 11843384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 11379 - 11300
Alignment:
Q  218 ggtcaaccaaacgaccattgaggggttaaatagtatttcacataataaaatataatcaaagaaatagcattcaaggatttcaa 300  Q
    |||||||||||||| || || |||||||||||||||| |||| ||| ||| ||||||||| ||| || |||||||||||||||    
T  11379 ggtcaaccaaacgatcactg-ggggttaaatagtattccacacaat-aaacataatcaaataaa-agtattcaaggatttcaa 11300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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