View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_337 (Length: 250)

Name: NF11737A_low_337
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_337
NF11737A_low_337
[»] chr7 (30 HSPs)
chr7 (22-250)||(4843276-4843504)
chr7 (27-246)||(3012288-3012502)
chr7 (74-230)||(19377419-19377576)
chr7 (71-230)||(28693975-28694134)
chr7 (86-230)||(21932714-21932858)
chr7 (58-250)||(38128912-38129100)
chr7 (80-250)||(814904-815070)
chr7 (44-148)||(26722955-26723059)
chr7 (84-189)||(21688149-21688254)
chr7 (27-250)||(35300359-35300565)
chr7 (179-250)||(22206617-22206688)
chr7 (179-250)||(22228051-22228122)
chr7 (27-148)||(41759625-41759745)
chr7 (27-141)||(5991432-5991542)
chr7 (64-250)||(23704400-23704570)
chr7 (27-141)||(7873232-7873345)
chr7 (90-250)||(42439493-42439649)
chr7 (182-250)||(5991351-5991419)
chr7 (186-250)||(7873151-7873215)
chr7 (125-250)||(41862277-41862398)
chr7 (172-250)||(38991108-38991186)
chr7 (207-250)||(26722890-26722933)
chr7 (57-130)||(22206709-22206782)
chr7 (57-130)||(22227957-22228030)
chr7 (44-141)||(25688202-25688299)
chr7 (205-250)||(28693934-28693979)
chr7 (187-223)||(21688270-21688306)
chr7 (203-250)||(30852447-30852494)
chr7 (84-144)||(38991181-38991241)
chr7 (212-250)||(41759558-41759596)
[»] chr3 (30 HSPs)
chr3 (44-250)||(41218286-41218492)
chr3 (90-250)||(33179023-33179199)
chr3 (27-250)||(7500940-7501146)
chr3 (51-209)||(41358570-41358729)
chr3 (44-148)||(26371038-26371142)
chr3 (178-250)||(28311395-28311467)
chr3 (44-148)||(37516642-37516746)
chr3 (84-224)||(53068282-53068418)
chr3 (185-250)||(43700124-43700189)
chr3 (178-250)||(53652016-53652088)
chr3 (44-141)||(26278363-26278460)
chr3 (178-250)||(14461183-14461255)
chr3 (178-250)||(44047702-44047774)
chr3 (178-250)||(12909946-12910016)
chr3 (205-250)||(26370973-26371018)
chr3 (52-141)||(35077232-35077321)
chr3 (205-250)||(37516766-37516811)
chr3 (84-147)||(53651938-53652001)
chr3 (205-250)||(25391776-25391821)
chr3 (84-148)||(44047624-44047688)
chr3 (203-238)||(53987974-53988009)
chr3 (84-141)||(53987904-53987961)
chr3 (84-148)||(25391841-25391905)
chr3 (84-148)||(28311317-28311381)
chr3 (170-209)||(41199866-41199905)
chr3 (203-250)||(41358550-41358597)
chr3 (205-250)||(26278475-26278520)
chr3 (93-146)||(38239502-38239555)
chr3 (84-148)||(14461105-14461169)
chr3 (116-148)||(43700210-43700242)
[»] chr2 (25 HSPs)
chr2 (76-250)||(17148808-17148981)
chr2 (27-230)||(25562914-25563116)
chr2 (85-246)||(17249354-17249511)
chr2 (84-219)||(41010510-41010645)
chr2 (90-230)||(12000564-12000700)
chr2 (91-250)||(304022-304198)
chr2 (178-250)||(41010625-41010697)
chr2 (178-250)||(41114800-41114872)
chr2 (84-250)||(6799816-6799966)
chr2 (184-250)||(18299073-18299139)
chr2 (178-250)||(29257479-29257551)
chr2 (113-205)||(33909301-33909393)
chr2 (136-246)||(45444388-45444494)
chr2 (90-230)||(15651248-15651384)
chr2 (178-250)||(13203880-13203952)
chr2 (84-148)||(18299159-18299223)
chr2 (84-148)||(13203802-13203866)
chr2 (84-148)||(41114886-41114950)
chr2 (203-250)||(2475944-2475991)
chr2 (90-148)||(22572717-22572775)
chr2 (64-152)||(34756706-34756794)
chr2 (116-189)||(16221016-16221089)
chr2 (205-250)||(22572652-22572697)
chr2 (84-148)||(29257401-29257465)
chr2 (115-152)||(13654786-13654823)
[»] chr8 (18 HSPs)
chr8 (51-221)||(13243095-13243265)
chr8 (84-230)||(34282832-34282978)
chr8 (57-250)||(36406420-36406597)
chr8 (53-189)||(39431638-39431774)
chr8 (178-250)||(3383950-3384022)
chr8 (182-250)||(27321793-27321861)
chr8 (184-238)||(28928178-28928232)
chr8 (84-148)||(24965067-24965131)
chr8 (191-250)||(35384296-35384355)
chr8 (51-148)||(3384036-3384133)
chr8 (202-250)||(34282791-34282839)
chr8 (90-148)||(28928099-28928158)
chr8 (168-209)||(12478246-12478287)
chr8 (202-250)||(24965148-24965196)
chr8 (93-152)||(21138071-21138130)
chr8 (203-250)||(38214863-38214910)
chr8 (178-219)||(39431591-39431632)
chr8 (168-200)||(43843322-43843354)
[»] chr4 (42 HSPs)
chr4 (45-250)||(25237572-25237773)
chr4 (90-250)||(52373779-52373939)
chr4 (90-238)||(49745080-49745229)
chr4 (27-250)||(4728537-4728743)
chr4 (44-250)||(2521829-2522051)
chr4 (84-209)||(41972393-41972518)
chr4 (178-250)||(10715769-10715841)
chr4 (178-250)||(10929539-10929611)
chr4 (84-250)||(50099875-50100055)
chr4 (27-250)||(46645582-46645788)
chr4 (74-188)||(36947543-36947657)
chr4 (178-250)||(2017368-2017440)
chr4 (178-250)||(4552298-4552370)
chr4 (178-250)||(32005996-32006068)
chr4 (178-250)||(40969337-40969409)
chr4 (184-238)||(43003127-43003181)
chr4 (84-148)||(31364170-31364234)
chr4 (170-246)||(50383979-50384055)
chr4 (90-181)||(8901844-8901934)
chr4 (179-250)||(9003669-9003740)
chr4 (27-141)||(14044336-14044449)
chr4 (52-141)||(9003571-9003659)
chr4 (27-148)||(10058516-10058636)
chr4 (178-250)||(2576285-2576357)
chr4 (205-250)||(10058656-10058701)
chr4 (205-250)||(31364254-31364299)
chr4 (178-250)||(1585782-1585854)
chr4 (64-152)||(31929044-31929132)
chr4 (208-250)||(41972373-41972415)
chr4 (44-141)||(9694094-9694191)
chr4 (84-148)||(10715690-10715755)
chr4 (84-148)||(10929460-10929525)
chr4 (27-148)||(2576150-2576271)
chr4 (205-238)||(11826991-11827024)
chr4 (177-230)||(43003156-43003209)
chr4 (92-148)||(4552228-4552284)
chr4 (84-148)||(40969259-40969323)
chr4 (203-250)||(14044462-14044509)
chr4 (203-250)||(32828281-32828328)
chr4 (44-141)||(11827039-11827135)
chr4 (84-148)||(2017454-2017518)
chr4 (169-201)||(15034458-15034490)
[»] chr5 (37 HSPs)
chr5 (52-246)||(767288-767478)
chr5 (50-250)||(12267314-12267513)
chr5 (50-250)||(13942684-13942886)
chr5 (44-189)||(16667458-16667603)
chr5 (44-250)||(21069003-21069205)
chr5 (84-250)||(15503950-15504133)
chr5 (84-250)||(36234486-36234652)
chr5 (44-189)||(17192634-17192779)
chr5 (178-250)||(14832742-14832814)
chr5 (44-250)||(15675307-15675497)
chr5 (57-250)||(35468910-35469087)
chr5 (179-250)||(32953599-32953670)
chr5 (57-148)||(33006914-33007005)
chr5 (27-141)||(43228655-43228768)
chr5 (27-148)||(34846345-34846465)
chr5 (178-250)||(2476477-2476549)
chr5 (178-250)||(34444078-34444150)
chr5 (179-250)||(16567904-16567975)
chr5 (184-250)||(1672418-1672484)
chr5 (44-141)||(37779670-37779767)
chr5 (178-250)||(6900879-6900951)
chr5 (179-250)||(7162015-7162086)
chr5 (84-250)||(30248999-30249149)
chr5 (27-141)||(32953680-32953793)
chr5 (179-249)||(43228575-43228645)
chr5 (116-189)||(8214628-8214701)
chr5 (52-141)||(37607471-37607560)
chr5 (27-141)||(7162096-7162209)
chr5 (205-250)||(33007025-33007070)
chr5 (205-250)||(34846485-34846530)
chr5 (44-141)||(16567797-16567894)
chr5 (84-148)||(34444000-34444064)
chr5 (203-238)||(37552051-37552086)
chr5 (203-238)||(37654881-37654916)
chr5 (44-141)||(1672499-1672596)
chr5 (121-152)||(13695094-13695125)
chr5 (203-238)||(37779780-37779815)
[»] chr6 (25 HSPs)
chr6 (44-238)||(2836110-2836321)
chr6 (51-250)||(9696057-9696240)
chr6 (123-248)||(34188856-34188981)
chr6 (64-250)||(2941237-2941407)
chr6 (51-250)||(15528948-15529131)
chr6 (172-250)||(10397740-10397818)
chr6 (178-250)||(23663690-23663762)
chr6 (44-148)||(9046932-9047036)
chr6 (178-250)||(34248944-34249016)
chr6 (179-250)||(28614335-28614406)
chr6 (184-250)||(14938853-14938919)
chr6 (178-250)||(15122156-15122228)
chr6 (184-250)||(9046846-9046912)
chr6 (85-162)||(339371-339448)
chr6 (51-148)||(15122045-15122142)
chr6 (84-148)||(23663776-23663840)
chr6 (85-148)||(1781039-1781102)
chr6 (187-238)||(2960794-2960845)
chr6 (182-244)||(31200094-31200156)
chr6 (205-250)||(1780974-1781019)
chr6 (91-148)||(10397809-10397866)
chr6 (178-250)||(31188243-31188315)
chr6 (84-148)||(34249030-34249094)
chr6 (203-250)||(339476-339523)
chr6 (27-102)||(28614434-28614508)
[»] chr1 (35 HSPs)
chr1 (27-246)||(48940340-48940553)
chr1 (44-250)||(14727324-14727514)
chr1 (85-200)||(24646088-24646203)
chr1 (172-250)||(27460785-27460863)
chr1 (91-250)||(34459150-34459305)
chr1 (72-200)||(24745434-24745562)
chr1 (44-148)||(31844637-31844741)
chr1 (44-148)||(6331680-6331784)
chr1 (116-250)||(49898442-49898572)
chr1 (178-249)||(4641969-4642040)
chr1 (125-250)||(6802015-6802136)
chr1 (84-250)||(9527079-9527241)
chr1 (178-250)||(25007576-25007648)
chr1 (178-250)||(37153921-37153993)
chr1 (178-250)||(44305524-44305596)
chr1 (84-231)||(27583963-27584094)
chr1 (179-250)||(4774085-4774156)
chr1 (84-189)||(4642046-4642151)
chr1 (178-250)||(25011468-25011540)
chr1 (44-148)||(8239285-8239391)
chr1 (178-247)||(1428353-1428422)
chr1 (84-148)||(25011553-25011617)
chr1 (84-148)||(27460730-27460794)
chr1 (198-250)||(33468902-33468954)
chr1 (205-250)||(31844572-31844617)
chr1 (178-231)||(44238791-44238844)
chr1 (84-148)||(37154007-37154071)
chr1 (84-148)||(44305446-44305510)
chr1 (84-147)||(25007498-25007561)
chr1 (94-148)||(44238875-44238929)
chr1 (205-250)||(6331804-6331849)
chr1 (205-250)||(8239411-8239456)
chr1 (116-148)||(1428436-1428468)
chr1 (84-128)||(4774041-4774085)
chr1 (116-152)||(33169334-33169370)
[»] scaffold0021 (3 HSPs)
scaffold0021 (50-209)||(109255-109414)
scaffold0021 (50-246)||(112140-112329)
scaffold0021 (212-246)||(109239-109273)
[»] scaffold0618 (2 HSPs)
scaffold0618 (178-250)||(1808-1880)
scaffold0618 (84-148)||(1730-1794)
[»] scaffold0075 (4 HSPs)
scaffold0075 (178-250)||(11636-11708)
scaffold0075 (178-243)||(7023-7088)
scaffold0075 (91-148)||(6952-7009)
scaffold0075 (91-148)||(11565-11622)
[»] scaffold0638 (2 HSPs)
scaffold0638 (27-141)||(4089-4202)
scaffold0638 (205-250)||(4217-4262)
[»] scaffold0108 (1 HSPs)
scaffold0108 (168-209)||(20937-20978)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 250
Target Start/End: Original strand, 4843276 - 4843504
Alignment:
Q  22 cacaatttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcat 121  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  4843276 cacaatttgtaggaagtcagacccatttctagaacttttagcttttccttcggatttacctacggatatttgtgtacattccgcatgaaacacatttcat 4843375  T
Q  122 gcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattat 221  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4843376 gcagattttgccaaggatttaggttcccaggtgaggtaatacattgggattttaggatccgcaggaaatgtgaaattatccgcaggaaatgtgaaattat 4843475  T
Q  222 tcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||| ||||||| |||||||||||    
T  4843476 tcgcaggaaagaagtaacgttttgcgata 4843504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 27 - 246
Target Start/End: Original strand, 3012288 - 3012502
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| ||||||||||||| ||||||| ||||||||||| | ||| |||||||| |||||||| ||| |||| ||| ||||||    
T  3012288 tttgtagcaagcccaacc-attactagaacttttagcttttcctgcggatttacctgccgatttttgtgtacattccgcaggaaacacacttcctgcaga 3012386  T
Q  127 ttttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgca 226  Q
    ||||||||||||| |||||||||||| ||||||||||  | ||||||||||||||||||||||   || | |||| ||||||||||||||||||||| ||    
T  3012387 ttttgccaaggatataggttcccaggtgaggtaataccataggattttaggatccgcaggaaa---gata-tatccgcaggaaatgtgaaattattcaca 3012482  T
Q  227 ggaaggaagtaatgttttgc 246  Q
    |||||||||||| |||||||    
T  3012483 ggaaggaagtaacgttttgc 3012502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 19377419 - 19377576
Alignment:
Q  74 gatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattt 173  Q
    ||||||||| ||||| |||||| |||||||| | |||  ||||||| ||||||||||||||||||||||||| || ||| |||||||||| || ||||||    
T  19377419 gatttacctgcggatgtttgtggaaattccgaaggaaatacatttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattt 19377518  T
Q  174 taggatccgcaggaaatgtgaaattatctgcagg-aaatgtgaaattattcgcaggaa 230  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  19377519 taggatccgcaggaaatgtgaaattatccgcaggaaaatgtgaaattattcgcaggaa 19377576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 28694134 - 28693975
Alignment:
Q  71 tcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattggga 170  Q
    ||||||||| || ||||| ||||||||||||| ||| ||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||  | |||    
T  28694134 tcggatttagctgcggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgcccaggatttaggttcccaggtgaggtaataccatagga 28694035  T
Q  171 ttttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||||||||| || |||||    
T  28694034 ttttaggatccgcaggaaatgtgaaattatccgcaggatttgtgaaattatccggaggaa 28693975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 230
Target Start/End: Complemental strand, 21932858 - 21932714
Alignment:
Q  86 gatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcag 185  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||  | ||||||| |||||||||     
T  21932858 gatatttgtgtaaattccgcaggaaacacatttcctgcagattttgtcaaggatttaggtttccaggtgaggtaataccataggatttttggatccgcat 21932759  T
Q  186 gaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
    ||| |||||||||||| ||||||||| | |||||||  |||||||    
T  21932758 gaattgtgaaattatccgcaggaaatataaaattatctgcaggaa 21932714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 250
Target Start/End: Complemental strand, 38129100 - 38128912
Alignment:
Q  58 tttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagagg 157  Q
    |||| |||||||| | | ||||||| ||||| ||||||||||||| | | ||| |||||||| |||| ||||||||||||||||||||||||||| ||||    
T  38129100 tttaatttttcctgcagttttacctgcggatttttgtgtaaattctgaaggaaacacatttcctgcatattttgccaaggatttaggttcccaggtgagg 38129001  T
Q  158 taatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
     ||||   | ||||||||||||||||||||||   || | ||| ||||||||||||||||||||  ||||||||||| ||| |||||||||||    
T  38129000 caatatcataggattttaggatccgcaggaaa---gata-tatgtgcaggaaatgtgaaattatctgcaggaaggaaataacgttttgcgata 38128912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 250
Target Start/End: Complemental strand, 815070 - 814904
Alignment:
Q  80 cctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggat 179  Q
    ||||||||| |||||||||||||||||  ||  ||||||| |||||||||||||||| ||||||||||||| | |||||||||| || | ||||||||||    
T  815070 cctacggatttttgtgtaaattccgcagaaaatacatttcttgcagattttgccaagaatttaggttcccaagtgaggtaataccttagaattttaggat 814971  T
Q  180 ccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    | ||| ||||   || | |||| |||| ||||||||||||||| ||||||| ||||||| |||||||||||    
T  814970 ctgcacgaaa---gata-tatccgcagaaaatgtgaaattattagcaggaatgaagtaacgttttgcgata 814904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 26723059 - 26722955
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| ||||||||||| ||||| ||| ||||||||||||| ||| |||||||| ||||||||||| |||||||||||    
T  26723059 ccattactagaaattttagcttttcctacggatttacctgcggatttttatgtaaattccgcaggaaacacatttcctgcagattttgtcaaggatttag 26722960  T
Q  144 gttcc 148  Q
    |||||    
T  26722959 gttcc 26722955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 189
Target Start/End: Original strand, 21688149 - 21688254
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||| |||||||||||||  |||| ||| |||||| || |||||||| |||||||    
T  21688149 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcgaaggatttaggttatcaggtgagataataccttaggattttaagatccgc 21688248  T
Q  184 aggaaa 189  Q
    ||||||    
T  21688249 aggaaa 21688254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 35300565 - 35300359
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| ||||||  ||||| ||||||| ||||||||||| ||||| ||||||||||||||||| |||    ||||| ||||||    
T  35300565 tttgtagcaagccctacc-attactagaatgtttagcttttcctgcggatttacctgcggatttttgtgtaaattccgcaggaaatgtatttcctgcaga 35300467  T
Q  127 ttttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc 225  Q
    |||||||||||||||||||||| ||||| || ||                  ||||| |||||||||||| ||||||||||||||||||||||||||||     
T  35300466 ttttgccaaggatttaggttccgcaggaaagata-----------------tatccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgt 35300384  T
Q  226 aggaaggaagtaatgttttgcgata 250  Q
    | ||||||||||| ||||| |||||    
T  35300383 aagaaggaagtaacgttttacgata 35300359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 22206688 - 22206617
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  22206688 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 22206617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 22228051 - 22228122
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  22228051 tccgcaggaaatgtgagattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 22228122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 41759745 - 41759625
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||||||||||||| ||||| | | ||||||| |  |||| || |||||||||||||| ||| |||||||| ||||||    
T  41759745 tttgtagcaagccc-agccattactagaacttttagcttttcttgcagatttacttgtggattttggtgtaaattccgcaggaaacacatttcctgcaga 41759647  T
Q  127 ttttgccaaggatttaggttcc 148  Q
    ||||||||||||||||||||||    
T  41759646 ttttgccaaggatttaggttcc 41759625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 5991542 - 5991432
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||||||||||||||||||||| ||||||||||| |||   ||| ||||||||||||| ||| |||||||| ||||||    
T  5991542 tttgtagcaagccc-agccattactagaacttttagtttttcctgcggatttacctgcgg---tttatgtaaattccgcaggaaacacatttcctgcaga 5991447  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  5991446 ttttgcctaggattt 5991432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 64 - 250
Target Start/End: Complemental strand, 23704570 - 23704400
Alignment:
Q  64 ttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggagaggtaata 162  Q
    ||||||| |||||||||||  |||| ||||||||||||||||   || |||||||| |||||||||||||||||||||||||||| ||||| || ||       
T  23704570 ttttcctgcggatttacctgtggatttttgtgtaaattccgccgaaaacacatttcctgcagattttgccaaggatttaggttccgcaggaaagatat-- 23704473  T
Q  163 cattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
                   ||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| |||||    
T  23704472 ---------------atccgtaggaaatgtgaaattatctgcaggaaatgtaaaattattcgcaagaaagaagtaacgttttacgata 23704400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 7873345 - 7873232
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| ||||||||||||| |||| || ||||||||||| ||| | ||| ||||||||||||| ||| |||||||| ||||||    
T  7873345 tttgtagcaagcccaacc-attactagaacttttagctttttctgcggatttacctgcgggtttttatgtaaattccgcaggaaacacatttcctgcaga 7873247  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  7873246 ttttgcctaggattt 7873232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 42439649 - 42439493
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||||||||||||||||| ||||||||||||||  | | ||||||| || || | ||||    
T  42439649 tttgtgtaaatttcgcaggaaacacattttctgcagattttgccaaggatttaggttcctaggagaggtaataccatagaattttagaatgcgtatgaaa 42439550  T
Q  190 tgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
       || | |||| | || ||||||||||||||||| || || ||||||| |||||||||||    
T  42439549 ---gata-tatccgtagaaaatgtgaaattattcgtagaaaagaagtaacgttttgcgata 42439493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 5991419 - 5991351
Alignment:
Q  182 gcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||  ||||||||||    
T  5991419 gcaggaaatgtgaaattatccgcaagaaatgtaaaattattcgcaggaaggaagtaacattttgcgata 5991351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 7873215 - 7873151
Alignment:
Q  186 gaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||| |||||||||||||||||||| || ||||||||||||  ||||||||||    
T  7873215 gaaatgtgaaattatccgcaggaaatgtgaaattattagcgggaaggaagtaacattttgcgata 7873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 41862398 - 41862277
Alignment:
Q  125 gattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcg 224  Q
    ||||||||||||||||||||||| |||  |||||| ||| || |||||||||||||| ||||||| ||     |||| |||||||||||  |||||| ||    
T  41862398 gattttgccaaggatttaggttctcagatgaggtattaccttaggattttaggatccacaggaaaggt----atatccgcaggaaatgtataattatccg 41862303  T
Q  225 caggaaggaagtaatgttttgcgata 250  Q
    ||| || |||||| ||||||||||||    
T  41862302 cagaaatgaagtattgttttgcgata 41862277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 38991186 - 38991108
Alignment:
Q  172 tttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||| ||||||||||||||  | ||||||| ||||||||||||||||||| |  ||| |||||||||||    
T  38991186 tttaggatccgcagaaaatgtgaaattattcgtaggaaatatgaaattattcgcaggaagaagataacgttttgcgata 38991108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 26722933 - 26722890
Alignment:
Q  207 gaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  26722933 gaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 26722890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 22206782 - 22206709
Alignment:
Q  57 ttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagatttt 130  Q
    |||||| ||||||| ||||||||||||||  | ||| ||||||||||||| ||| |||||||| ||||||||||    
T  22206782 ttttagcttttcctgcggatttacctacgagtgtttatgtaaattccgcaggaaacacatttcctgcagatttt 22206709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 22227957 - 22228030
Alignment:
Q  57 ttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagatttt 130  Q
    |||||| ||||||| ||||||||||||||  | ||| ||||||||||||| ||| |||||||| ||||||||||    
T  22227957 ttttagcttttcctgcggatttacctacgagtgtttatgtaaattccgcaggaaacacatttcctgcagatttt 22228030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 25688299 - 25688202
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||| ||||||||| ||||||| | ||||||||| |  || ||| ||||||||||||| ||| || ||||| ||||||||||||| |||||||    
T  25688299 ccattactaaaacttttagcttttcctgcagatttacctgcaaatgtttatgtaaattccgcaggaaacatatttcctgcagattttgcctaggattt 25688202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 28693979 - 28693934
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||    
T  28693979 aggaaatgtgaaattattcgcagaaaggaagtaaagttttgcgata 28693934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 21688270 - 21688306
Alignment:
Q  187 aaatgtgaaattatctgcaggaaatgtgaaattattc 223  Q
    |||||||||||||||||||||||||||||||||||||    
T  21688270 aaatgtgaaattatctgcaggaaatgtgaaattattc 21688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 30852447 - 30852494
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  30852447 gcaggaaatgtgaaattattcgcaggaaggaagcaacattttgcgata 30852494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 38991241 - 38991181
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttagg 144  Q
    ||||| ||||| |||||||||   ||| |||||||| ||||||||||||||||||||||||    
T  38991241 cggatttttgtataaattccgttggaaacacatttcctgcagattttgccaaggatttagg 38991181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 41759596 - 41759558
Alignment:
Q  212 gtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||| ||| |||||||    
T  41759596 gtgaaattattcgcaggaaggaagtaacgttgtgcgata 41759558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 41218492 - 41218286
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| ||||||||||||| ||||||| ||||||||| | || || ||||| ||||||||||| ||| |||||||| ||| |||||||||||| ||||||    
T  41218492 ccattactagaacttttagcttttcctgcggatttacttgcgcatttttgtctaaattccgcaggaaacacatttcctgccgattttgccaagaatttag 41218393  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttt 243  Q
    |||| || | |||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41218392 gttctcatgtgaggtaataccttaggattttaggatccgcaggaaatgtaaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttt 41218293  T
Q  244 tgcgata 250  Q
    |||||||    
T  41218292 tgcgata 41218286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 33179199 - 33179023
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttagg------------ 177  Q
    ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||  | ||||||||||                
T  33179199 tttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaataccataggattttaggatcgcaggaaag 33179100  T
Q  178 ----atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
        |||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  33179099 atatatccgcagaaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaatgaagtaacgttttgcgata 33179023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 7500940 - 7501146
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| |||||| |||||| ||||||| ||||||||| | ||||| ||||||||||||||||| ||| |||||||| | ||||    
T  7500940 tttgtagcaagcccaacc-attactagaatttttagcttttcctgcggatttacatgcggatgtttgtgtaaattccgcaggaaacacatttcctacaga 7501038  T
Q  127 ttttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc 225  Q
    |||||||||||||||||||||| ||||| || ||                  ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7501039 ttttgccaaggatttaggttccgcaggaaagata-----------------tatccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc 7501121  T
Q  226 aggaaggaagtaatgttttgcgata 250  Q
    |||||| |||||| |||||||||||    
T  7501122 aggaagtaagtaacgttttgcgata 7501146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 209
Target Start/End: Complemental strand, 41358729 - 41358570
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaa-ttccgcatgaaccacatttcatgcagattttgccaaggatttaggttccc 149  Q
    |||||||| | | ||||||| ||||||||| | |||||||||||||||| |||| |   || |||||||| ||| ||||||||||| ||||||||||| |    
T  41358729 tagaacttctcgcttttcctacggatttacttgcggatatttgtgtaaaattcctccaaaaacacatttcctgcggattttgccaatgatttaggttctc 41358630  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaa 209  Q
    ||| |||||||||| || ||||||| |||||||||||||||||| ||||||| |||||||    
T  41358629 aggtgaggtaataccttaggatttttggatccgcaggaaatgtgcaattatccgcaggaa 41358570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 26371142 - 26371038
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| ||||||  ||| || ||||||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  26371142 ccattactagaaattttagcattttctgcggatttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttag 26371043  T
Q  144 gttcc 148  Q
    |||||    
T  26371042 gttcc 26371038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 28311395 - 28311467
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28311395 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaatgttttgcgata 28311467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 37516642 - 37516746
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| ||||||||||| ||||  ||||||||||||| ||| ||| |||||||| ||||||||||||||||||| |||    
T  37516642 ccattactagaatttttagcttttcctgcggatttacctgcggaattttgtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatctag 37516741  T
Q  144 gttcc 148  Q
    |||||    
T  37516742 gttcc 37516746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 224
Target Start/End: Original strand, 53068282 - 53068418
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| |||||||||||||| || ||| |||||||| |||||||||||||||| ||||||||||| ||| ||| |||||| || |||||||||||| |||    
T  53068282 cggatttttgtgtaaattccacaggaaacacatttcctgcagattttgccaagaatttaggttcctaggtgagataataccttaggattttaggattcgc 53068381  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcg 224  Q
    || |||    ||  |||| |||| |||||||||||||||||    
T  53068382 agtaaa----aatatatccgcagaaaatgtgaaattattcg 53068418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 185 - 250
Target Start/End: Complemental strand, 43700189 - 43700124
Alignment:
Q  185 ggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||    
T  43700189 ggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagaaaagaagtaacgttttgcgata 43700124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 53652016 - 53652088
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||||||||||    
T  53652016 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaagaacgtaatgttttgcgata 53652088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 26278363 - 26278460
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| |||||| |||||| ||||| | ||||||||||||||||| ||| ||||||||||| | ||| |||||||| ||||||||||||| |||||||    
T  26278363 ccattactagaatttttagcttttcatgcggatttacctacggatttttatgtaaattccggaggaaacacatttcctgcagattttgcctaggattt 26278460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 14461183 - 14461255
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  14461183 atccgtaggaaatgtgaatttatctgcaggaaatgtaaaattattcgtaggaaggaagtaacgttttgtgata 14461255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 44047702 - 44047774
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| |||||||||||    
T  44047702 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaagaagtaacgttttgcgata 44047774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 12909946 - 12910016
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||  |||||||||||| | |||||||||    
T  12909946 atccgtaggaaatgtgaatttatctacaggaaatgtgaaattattcg--ggaaggaagtaacgatttgcgata 12910016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 26371018 - 26370973
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  26371018 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 26370973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 35077232 - 35077321
Alignment:
Q  52 agaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||||||||| |||| || |||||||||||  | || ||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  35077232 agaacttttagctttttctgcggatttacctgggaatttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 35077321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 37516766 - 37516811
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  37516766 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 37516811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 53651938 - 53652001
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttc 147  Q
    ||||| ||||||||||||||||| |||   |||||| |||||||||||||||||||||||||||    
T  53651938 cggatttttgtgtaaattccgcaggaaatgcatttcctgcagattttgccaaggatttaggttc 53652001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 25391821 - 25391776
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||| | |||||||||||||||||||||||    
T  25391821 aggaaatgtgaaattattcgtaagaaggaagtaatgttttgcgata 25391776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 44047624 - 44047688
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    ||||| ||||||||||||||||||||||||||||    
T  44047624 cggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 44047688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 53987974 - 53988009
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  53987974 gcaggaaatgtgaaattattcgcaggaaggaagtaa 53988009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 53987904 - 53987961
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  53987904 cggatttttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 53987961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 25391905 - 25391841
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    ||||| |||| |||||||||||||||||||||||    
T  25391905 cggatttttgtgtaaattccgcaagaaatgtatttcttgcaaattttgccaaggatttaggttcc 25391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 28311317 - 28311381
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    ||||| || |||||||||||||||||||||||||    
T  28311317 cggatttttgtgtaaattccgcaggaaatgtatttcctgtagattttgccaaggatttaggttcc 28311381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 41199905 - 41199866
Alignment:
Q  170 attttaggatccgcaggaaatgtgaaattatctgcaggaa 209  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  41199905 attttaggatccgcaggaaatgtgcaattatccgcaggaa 41199866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Complemental strand, 41358597 - 41358550
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  41358597 gcaggaaatgtgcaattatccgcaggaaggaaataacgttttgcgata 41358550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 26278475 - 26278520
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||| ||||||||||   ||||||||||    
T  26278475 aggaaatgtgaaattattcgcaagaaggaagtatcattttgcgata 26278520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 38239502 - 38239555
Alignment:
Q  93 gtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggtt 146  Q
    |||||||||| ||| ||| |||||||  ||| ||||||||||||||||||||||    
T  38239502 gtgtaaattctgcaggaaacacattttctgcggattttgccaaggatttaggtt 38239555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 14461105 - 14461169
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||| ||||||||||||| |||    || || ||||||||||||||||||||||||||||    
T  14461105 cggatttttatgtaaattccgcaggaaatgtatgtcctgcagattttgccaaggatttaggttcc 14461169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 43700242 - 43700210
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcc 148  Q
    |||| ||||||||||||||||||||||||||||    
T  43700242 tttcctgcagattttgccaaggatttaggttcc 43700210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 17148808 - 17148981
Alignment:
Q  76 tttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggatttta 175  Q
    ||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||| |||| |||||  | ||||||||    
T  17148808 tttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgc-aaggatttaggttcccaggtgagggaataccataggatttta 17148906  T
Q  176 ggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  17148907 ggatccgcaggaaatgtggaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgagata 17148981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 25562914 - 25563116
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| ||||||||||||| ||||||| |||||||| || |||||  || ||||||||||||| |||  ||||||| ||||||    
T  25562914 tttgtagcaagcccaacc-attactagaacttttagcttttcctgcggatttatctgcggattgttttgtaaattccgcaggaaatacatttcctgcaga 25563012  T
Q  127 ttttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgca 226  Q
    |||||||||||||||||||||||||| ||||||||||  | |||||||||||||| |||||||||||||||||||  ||||||||||||||||||  |||    
T  25563013 ttttgccaaggatttaggttcccaggtgaggtaataccataggattttaggatccacaggaaatgtgaaattatccccaggaaatgtgaaattatctgca 25563112  T
Q  227 ggaa 230  Q
    ||||    
T  25563113 ggaa 25563116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 85 - 246
Target Start/End: Original strand, 17249354 - 17249511
Alignment:
Q  85 ggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgca 184  Q
    |||| |||||||||||||| || ||| |||||||| || |||||||||||||||||||||||| |||| |||||||||| || |||||||||||||||||    
T  17249354 ggatttttgtgtaaattccacaggaaacacatttcttgtagattttgccaaggatttaggttctcaggtgaggtaataccttaggattttaggatccgca 17249453  T
Q  185 ggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
      |||   || | |||| ||||||||||||||||||||||||||||| |||||| |||||||    
T  17249454 ttaaa---gata-tatccgcaggaaatgtgaaattattcgcaggaagaaagtaacgttttgc 17249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 41010510 - 41010645
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||||| ||||||| ||| ||| |||||||| |||||||||| | ||||||||||||||||| | ||||||||||     |||||||||||||||    
T  41010510 cggatttttgtataaattctgcaggaaacacatttcctgcagattttactaaggatttaggttcccatgtgaggtaataccacaagattttaggatccgc 41010609  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaatt 219  Q
    |||||||||||||||||| | |||||||||||||||    
T  41010610 aggaaatgtgaaattatccgtaggaaatgtgaaatt 41010645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 12000564 - 12000700
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    ||||||||||||||||| ||| |||||||| ||||||||||||||||||| ||||| || ||| |||||||||| || ||||||||||||||||||||||    
T  12000564 tttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatataggtccctaggtgaggtaataccttaggattttaggatccgcaggaaa 12000663  T
Q  190 tgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
       || | |||| ||||||||||||||||||| ||| ||||    
T  12000664 ---gata-tatccgcaggaaatgtgaaattatccgccggaa 12000700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 304198 - 304022
Alignment:
Q  91 ttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa- 189  Q
    ||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||| ||  |  |||||||||||||||||||||     
T  304198 ttgtgtaaatttcgcaggaaacacatttcttgcagattttgccaaggatttaggttcccatgtgaggtaacaccataagattttaggatccgcaggaaag 304099  T
Q  190 ----------------tgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
                    ||||||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||    
T  304098 atatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcagataagaagtaacgttttgcgata 304022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 41010625 - 41010697
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41010625 atccgtaggaaatgtgaaattttctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 41010697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 41114872 - 41114800
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  41114872 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcatgaaggaagtaacgttttgcgata 41114800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 6799966 - 6799816
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccg 182  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||| || ||                  |||||    
T  6799966 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttccgcaggaaagatat-----------------atccg 6799884  T
Q  183 caggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  6799883 taggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaactaacgttttgtgata 6799816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 18299139 - 18299073
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18299139 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttacgata 18299073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 29257479 - 29257551
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  29257479 atccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgata 29257551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 33909393 - 33909301
Alignment:
Q  113 acatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgca 205  Q
    ||||||| |||||||||| |||| ||||||||||| |||| ||||||||||  | |||||||||||||| |||||||||||||||||| ||||    
T  33909393 acatttcctgcagatttttccaaagatttaggttctcaggtgaggtaataccataggattttaggatccacaggaaatgtgaaattatttgca 33909301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 246
Target Start/End: Complemental strand, 45444494 - 45444388
Alignment:
Q  136 ggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaag 235  Q
    |||||||||||| |||| ||||||||||  | ||||||||||||| ||| ||||   || || |||| ||||||||||||||||||||||||||||||||    
T  45444494 ggatttaggttcacaggtgaggtaataccataggattttaggatctgcaagaaa---gatat-atctacaggaaatgtgaaattattcgcaggaaggaag 45444399  T
Q  236 taatgttttgc 246  Q
    |||||||||||    
T  45444398 taatgttttgc 45444388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 15651248 - 15651384
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    ||||||||||||||||| ||| |||||||| |||  |||||||||||||||||||| || ||| |||||||| | || ||||||||||||| | ||||||    
T  15651248 tttgtgtaaattccgcaggaaacacatttcctgcgtattttgccaaggatttaggtccctaggtgaggtaatgccttaggattttaggatcagtaggaaa 15651347  T
Q  190 tgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
       || | ||||  |||||||||||||||||| ||||||||    
T  15651348 ---gata-tatccccaggaaatgtgaaattatccgcaggaa 15651384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 13203880 - 13203952
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||  ||||||||||    
T  13203880 atccgtaggaaatgtgaaattatctgcggaaaatgtgaaattattcgctggaaggaagtaacattttgcgata 13203952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 18299223 - 18299159
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  18299223 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 18299159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 13203802 - 13203866
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||||||||    
T  13203802 cggatttttgtgtaaattccgcaggaaacacgtttcctgcagattttgccaaggatttaggttcc 13203866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 41114950 - 41114886
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| || |||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  41114950 cggattttcgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 41114886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 2475944 - 2475991
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  2475944 gcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 2475991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 22572775 - 22572717
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    |||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||    
T  22572775 tttgtgtaaattccccaggaaacacatttcctgcagattttgccaaggatttaggttcc 22572717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 34756706 - 34756794
Alignment:
Q  64 ttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccagg 152  Q
    ||||||| ||||||||||| | ||| || |||||||||||| | ||| ||| |||| ||  ||||||||||||||||||||||||||||    
T  34756706 ttttcctgcggatttacctgcagattttggtgtaaattccgtaggaatcacgtttcctgtggattttgccaaggatttaggttcccagg 34756794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 16221089 - 16221016
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    |||| ||| |||||||| ||||||||| ||||||||| ||| |||||| || ||||||||||||| ||||||||    
T  16221089 tttcctgcggattttgctaaggatttaagttcccaggtgagataataccttaggattttaggatctgcaggaaa 16221016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 22572697 - 22572652
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||    
T  22572697 aggaaatgtgaaattattcgcaggaagaaagtaacgttttgcgata 22572652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 29257401 - 29257465
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| |||||||||||| |||| ||| |||||||| |||||||||||||||| ||||| |||||    
T  29257401 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 29257465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 13654823 - 13654786
Alignment:
Q  115 atttcatgcagattttgccaaggatttaggttcccagg 152  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  13654823 atttcctgcggattttgccaaggatttaggttcccagg 13654786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 13243095 - 13243265
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttccca 150  Q
    |||||||||||| ||||||| | |||||| || ||||  ||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||    
T  13243095 tagaacttttagcttttcctgcagatttatctgcggagttttgtgtaaattccgcaggaaacacatttcctgtagattttgccaaggatttaggttccca 13243194  T
Q  151 ggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattat 221  Q
    || |||||||||| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  13243195 ggtgaggtaataccttaggattttaggatccgcaagaaatgtgaaattatccgcaggaaatgtgaaattat 13243265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 84 - 230
Target Start/End: Complemental strand, 34282978 - 34282832
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| || |||||||||| ||| ||| |||||||| |||||||||||||||||||||| ||||| ||| ||||||||||  | ||||||||||||||||    
T  34282978 cggattttagtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatttaagttccgaggtgaggtaataccataggattttaggatccgc 34282879  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||    
T  34282878 aggaaatgtgaaattatccgcatgaaatgtgaaattatttgcaggaa 34282832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 36406597 - 36406420
Alignment:
Q  57 ttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggaga 155  Q
    |||||| |||||||  |||||||||| ||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||| ||||||| ||||| |    
T  36406597 ttttagcttttcctgtggatttacctgcggatatttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggattgaggttccgcaggaaa 36406498  T
Q  156 ggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    | ||                  ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  36406497 gatat-----------------atccgtaggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 36406420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 39431774 - 39431638
Alignment:
Q  53 gaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccagg 152  Q
    |||||||||| ||||| | ||||||||||| ||||  ||||||||||||||| | ||| |||||||| ||||||||||||||| |||||||||||| |||    
T  39431774 gaacttttagcttttcttgcggatttacctgcggagttttgtgtaaattccgtaggaaacacatttcgtgcagattttgccaaagatttaggttcctagg 39431675  T
Q  153 agaggtaatacattgggattttaggatccgcaggaaa 189  Q
     ||||||||||  | ||||||| ||| ||||| ||||    
T  39431674 tgaggtaataccataggattttcggacccgcaagaaa 39431638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 3384022 - 3383950
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  3384022 atccgtaggaaatgtgaatttatctgcaggaaacgtgaaattattcgtaggaaggaagtaacgttttgcgata 3383950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 27321861 - 27321793
Alignment:
Q  182 gcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  27321861 gcaggatatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 27321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 28928178 - 28928232
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28928178 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaa 28928232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 24965067 - 24965131
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||    
T  24965067 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgcctaggatttaggttcc 24965131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 35384355 - 35384296
Alignment:
Q  191 gtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||    
T  35384355 gtgaaattatctggaggaaatgtgaaattattcgtaggaaggaagtaccgttttgcgata 35384296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 3384133 - 3384036
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| |||||| |||| || ||||||||||| ||||| ||||||||||||| |||  ||    |||||||| |||||||||||||||||||||||||    
T  3384133 tagaatttttagctttttctgcggatttacctgcggatttttgtgtaaattctgcaaaaaatgtatttcatgtagattttgccaaggatttaggttcc 3384036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 34282839 - 34282791
Alignment:
Q  202 tgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  34282839 tgcaggaaatgtgaaattattcgcaggaaggaagtaacgttgtgcgata 34282791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 28928099 - 28928158
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttca-tgcagattttgccaaggatttaggttcc 148  Q
    ||||||||||||||||| ||| ||||||||  ||||||||||||||||||||||||||||    
T  28928099 tttgtgtaaattccgcaggaaacacatttccctgcagattttgccaaggatttaggttcc 28928158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 209
Target Start/End: Original strand, 12478246 - 12478287
Alignment:
Q  168 ggattttaggatccgcaggaaatgtgaaattatctgcaggaa 209  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12478246 ggattttaggatccgcaggaaatgtgcaattatctgcaggaa 12478287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 24965148 - 24965196
Alignment:
Q  202 tgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  24965148 tgcaggaaatgtgaaattattcgcagaaagaaagtaaggttttgcgata 24965196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 21138130 - 21138071
Alignment:
Q  93 gtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccagg 152  Q
    ||||||||| |||||||| ||| |||| |||  |||||||||||||||||||||||||||    
T  21138130 gtgtaaatttcgcatgaaacacgtttcctgcgaattttgccaaggatttaggttcccagg 21138071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 38214863 - 38214910
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||| |||||||  ||||||||||    
T  38214863 gcaggaaatgtgaaattattcgcaggaatgaagtaacattttgcgata 38214910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 39431632 - 39431591
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaatt 219  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  39431632 atccgcatgaaatgtgaaattatctacaggaaatgtgaaatt 39431591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 43843322 - 43843354
Alignment:
Q  168 ggattttaggatccgcaggaaatgtgaaattat 200  Q
    |||||||||||||||||||||||||| ||||||    
T  43843322 ggattttaggatccgcaggaaatgtgcaattat 43843354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 45 - 250
Target Start/End: Original strand, 25237572 - 25237773
Alignment:
Q  45 catttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttagg 144  Q
    |||| |||||||||||||  ||| || ||||||||||| ||||  ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||    
T  25237572 cattactagaacttttagcgttttctgcggatttacctgcggaattttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttagg 25237671  T
Q  145 ttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgtttt 244  Q
    |||||||| |||||||||| ||  ||||||||||| |||||||||  ||    |||| |||||||||||||||||||||||||||||||||||| |||||    
T  25237672 ttcccaggtgaggtaataccttatgattttaggattcgcaggaaagatg----tatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgtttt 25237767  T
Q  245 gcgata 250  Q
    | ||||    
T  25237768 gtgata 25237773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 52373779 - 52373939
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    |||||||||||||||||  || |  ||||| ||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||||||||| ||||    
T  52373779 tttgtgtaaattccgcagaaaacgtatttcttgcagattttgtcagggatttaggttcccaggtgaggtaataccttaggattttaggatccgcatgaaa 52373878  T
Q  190 tgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  52373879 tgtgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 52373939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 49745080 - 49745229
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    ||||||||||||||| | ||| |||||||  |||||||||||||||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||    
T  49745080 tttgtgtaaattccgtaggaaacacattttctgcagattttgccaaggatttaggttcctaggtgaggtaataccttaggattttaggatccgcaggaaa 49745179  T
Q  190 tgtgaaattatctgcag-gaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    |||||||||||| ||||  |||||| ||||||||||||||||||| ||||    
T  49745180 tgtgaaattatccgcagaaaaatgtaaaattattcgcaggaaggacgtaa 49745229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 4728537 - 4728743
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||| ||| ||| |||||| |||||| ||||||| ||||||||||| ||||| |||| |||||||||||| ||| |||||||| ||||||    
T  4728537 tttgtagcaagccaaacc-attactagaatttttagcttttcctgcggatttacctgcggatttttgagtaaattccgcaggaaacacatttcctgcaga 4728635  T
Q  127 ttttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc 225  Q
    |||||||||||||||||||||| ||||| || ||                  ||| | ||||||||||||||||||||||| ||||||||||||||| ||    
T  4728636 ttttgccaaggatttaggttccgcaggaaagata-----------------tatctgtaggaaatgtgaaattatctgcagaaaatgtgaaattatttgc 4728718  T
Q  226 aggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||| |||||||||||    
T  4728719 aggaaggaagtaacgttttgcgata 4728743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 250
Target Start/End: Complemental strand, 2522051 - 2521829
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| || |||||||||| |||||||  |||||||||| ||||| |||||||||| |||||| ||| |||||||| || |||||||  |||||||||||    
T  2522051 ccattacttgaacttttagcttttcctg-ggatttacctgcggatttttgtgtaaagtccgcaggaaacacatttcctgtagattttatcaaggatttag 2521953  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcagg-----------------aaatgtgaaattatctgcaggaaatgtgaaattattcgca 226  Q
    ||||||||| |||||||||  || |||||||||||||||||||                 |||||||| |||||| ||||||||||||||||||||||||    
T  2521952 gttcccaggtgaggtaatatcttaggattttaggatccgcaggaaagacatatccgcagaaaatgtgatattatccgcaggaaatgtgaaattattcgca 2521853  T
Q  227 ggaaggaagtaatgttttgcgata 250  Q
    |||||||||||| ||||| |||||    
T  2521852 ggaaggaagtaacgttttacgata 2521829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 41972518 - 41972393
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||  ||  |||||||||||||||    
T  41972518 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggattaaggttcccaggtgaggtaatatcttaagattttaggatccgc 41972419  T
Q  184 aggaaatgtgaaattatctgcaggaa 209  Q
    || ||||||||||||||  |||||||    
T  41972418 agaaaatgtgaaattattcgcaggaa 41972393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 10715769 - 10715841
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10715769 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 10715841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 10929539 - 10929611
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10929539 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 10929611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 50099875 - 50100055
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||||||||||||||| | |||   |||||  |||| ||||||| ||||||||||||||||||| || ||||||| || ||||||||||||||||    
T  50099875 cggatttttgtgtaaattccgtaggaaattcattttctgcaaattttgctaaggatttaggttcccaggtgaagtaataccttaggattttaggatccgc 50099974  T
Q  184 a--------------ggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |              ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  50099975 atatatatatttgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 50100055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 250
Target Start/End: Original strand, 46645582 - 46645788
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| |||||| |||||| |||| || ||||||||||| ||||| ||||||||||||| ||| ||| |||||||||||||||    
T  46645582 tttgtagcaagcccaacc-attactagaatttttagctttttctgcggatttacctgcggatttttgtgtaaattctgcaggaaacacatttcatgcaga 46645680  T
Q  127 ttttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgc 225  Q
    ||||||||||  |||||||||| ||||| || ||                  ||||| || |||| ||||||||| | ||||||||||||||||||||||    
T  46645681 ttttgccaagagtttaggttccgcaggaaagata-----------------tatccgtagaaaatatgaaattatatacaggaaatgtgaaattattcgc 46645763  T
Q  226 aggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||| |||||||||||    
T  46645764 aggaaggaagtaacgttttgcgata 46645788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 74 - 188
Target Start/End: Original strand, 36947543 - 36947657
Alignment:
Q  74 gatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattt 173  Q
    ||||||||| ||||| ||||| ||||||| ||| ||| || ||||| ||| |||||||||||| ||||||||||||||| | |||||||| || ||||||    
T  36947543 gatttacctgcggatttttgtataaattctgcaggaaacatatttcctgcggattttgccaagaatttaggttcccaggtgtggtaataccttaggattt 36947642  T
Q  174 taggatccgcaggaa 188  Q
    |||||||||||||||    
T  36947643 taggatccgcaggaa 36947657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 2017440 - 2017368
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  2017440 atccgtaggaaatgtgaatttatctgtaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 2017368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 4552298 - 4552370
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||| |||||||||||    
T  4552298 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattatttgtaggaaggaagtaacgttttgcgata 4552370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 32005996 - 32006068
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  32005996 atccgtaggaaatgtgaatttatttgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 32006068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 40969337 - 40969409
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||||||    
T  40969337 atccgtaggaaatgtgaaattatctgcagaaaatatgaaattattcgcagaaaggaagtaacgttttgcgata 40969409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 43003181 - 43003127
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43003181 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaagaagtaa 43003127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 31364170 - 31364234
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  31364170 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcc 31364234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 50383979 - 50384055
Alignment:
Q  170 attttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
    ||||||||||||| |||||||||||||| ||| ||||||| | | |||||||||||||||||||||||| |||||||    
T  50383979 attttaggatccgtaggaaatgtgaaataatccgcaggaattataaaattattcgcaggaaggaagtaacgttttgc 50384055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 8901844 - 8901934
Alignment:
Q  90 tttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatcc 181  Q
    |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| || ||| | |||||||||| || ||||||||||||||    
T  8901844 tttgtgtaaactccgcaggaaacacatttcctgcagattttgccaaggatttagatttcca-gtgaggtaataccttaggattttaggatcc 8901934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 9003669 - 9003740
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||   |||||||||||||||||||||| |||||||||||  ||||||||||    
T  9003669 tccgcaggaaatgtgaaattatccataggaaatgtgaaattattcgcaagaaggaagtaacattttgcgata 9003740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 14044336 - 14044449
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||| | ||||| | | || |||||| ||||||| ||||||||||| || || ||| ||||||||||||| ||| |||||||| ||||||    
T  14044336 tttgtagcaagcca-agccattacgaaaatttttagcttttcctgcggatttacctgcgaatttttatgtaaattccgcaggaaacacatttcctgcaga 14044434  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  14044435 ttttgcctaggattt 14044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 9003571 - 9003659
Alignment:
Q  52 agaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||||||||  |||| |||||||||||||| ||||| ||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  9003571 agaacttttaactttttcttcggatttacctgcggat-tttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 9003659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 10058516 - 10058636
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| | |||| |||||| ||||||  |||||||||||  |||  ||||||||||||||||| ||| ||||||||  |||||    
T  10058516 tttgtagcaagcccaacc-attacgagaatttttagcttttcccgcggatttacctggggaattttgtgtaaattccgcaggaaacacatttccagcaga 10058614  T
Q  127 ttttgccaaggatttaggttcc 148  Q
    |||| |||||||||||||||||    
T  10058615 ttttaccaaggatttaggttcc 10058636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 2576285 - 2576357
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||| ||||||||||||| |||| |||||||| |||||| |||||||||| |||||||||||    
T  2576285 atccgtaggaaatgtaaaattatctgcagaaaatatgaaattaatcgcagaaaggaagtaacgttttgcgata 2576357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 10058656 - 10058701
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  10058656 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 10058701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 31364254 - 31364299
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  31364254 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 31364299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 1585782 - 1585854
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||| | |||| ||| || |||||||||||    
T  1585782 atccgtaggaaatgtaaatttatctgcaggaaatgtgaaattattcgtacgaagaaagcaacgttttgcgata 1585854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 31929132 - 31929044
Alignment:
Q  64 ttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccagg 152  Q
    ||||||| ||||||||  | ||||| ||  ||||||||| ||| ||| |||||||| |||| |||||||||||||||||||||||||||    
T  31929132 ttttcctgcggatttatttgcggattttattgtaaattctgcaagaaacacatttcctgcaaattttgccaaggatttaggttcccagg 31929044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 41972415 - 41972373
Alignment:
Q  208 aaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  41972415 aaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 41972373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 9694094 - 9694191
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||||||||||||  |||| || ||||||||  | ||||  ||| ||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  9694094 ccattactagaacttttaactttttctgcggatttatttgcggaattttatgtaaattccgcaggaaacacatttcctgcagattttgcctaggattt 9694191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 10715690 - 10715755
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttca-tgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||| |  ||||||||||||||||||||||||||||    
T  10715690 cggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10715755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 10929460 - 10929525
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttca-tgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||| |  ||||||||||||||||||||||||||||    
T  10929460 cggatttttgtgtaaattccgcaggaaacacattgccctgcagattttgccaaggatttaggttcc 10929525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 2576150 - 2576271
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  ||| ||| | |||| |||||| |||| || || |||||| | || || ||||| ||||||||||| ||| |||||||| ||||||    
T  2576150 tttgtagcaagcccaacc-attacaagaatttttagctttttctgcgaatttacttgcgaatttttgtataaattccgcaggaaacacatttcctgcaga 2576248  T
Q  127 -ttttgccaaggatttaggttcc 148  Q
     ||||||||||||| ||||||||    
T  2576249 tttttgccaaggatgtaggttcc 2576271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 11827024 - 11826991
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||||||||||||||    
T  11827024 aggaaatgtgaaattattcgcaggaaggaagtaa 11826991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 43003209 - 43003156
Alignment:
Q  177 gatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaa 230  Q
    |||||||||||||||| |||||||| | |||||||||||||||||  |||||||    
T  43003209 gatccgcaggaaatgttaaattatcggtaggaaatgtgaaattatctgcaggaa 43003156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 4552228 - 4552284
Alignment:
Q  92 tgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||||||||||||| |||    ||||| ||||||||||||||||||||||||||||    
T  4552228 tgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 4552284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 40969259 - 40969323
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||| ||| ||| |||||||  ||||||||||| ||| ||||||||||||    
T  40969259 cggatttttgtgtaaattctgcaggaaacacattttctgcagattttgtcaatgatttaggttcc 40969323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 14044462 - 14044509
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||| ||||||||| ||||  ||||||||||    
T  14044462 gcaggaaatgtgaaattattctcaggaaggaggtaacattttgcgata 14044509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 32828281 - 32828328
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  32828281 gcaggaaatgtaaaattatttgcaggaaggaagtaatattttgtgata 32828328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 11827135 - 11827039
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||||||||||||| |||| || ||||||||| | | ||| ||| |||||||| |||| |||  ||||||| || |||||||||| |||||||    
T  11827135 ccattactagaacttttagctttttctgcggatttacttgcagatttttatgtaaatttcgca-gaaatacatttcctgtagattttgcctaggattt 11827039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 2017518 - 2017454
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    |||||  ||||||||||||||| |||||||||||    
T  2017518 cggatttttgtgtaaattccgcaggaaatgtatttcccgcagattttgccaagtatttaggttcc 2017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 201
Target Start/End: Complemental strand, 15034490 - 15034458
Alignment:
Q  169 gattttaggatccgcaggaaatgtgaaattatc 201  Q
    ||||||||||||||||||||||||| |||||||    
T  15034490 gattttaggatccgcaggaaatgtgcaattatc 15034458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 767288 - 767478
Alignment:
Q  52 agaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccag 151  Q
    ||||||||||| ||||||| |||||||||    |||| ||||| ||||||||||| ||| |||||||| | ||| ||||||||||||||||| |||||||    
T  767288 agaacttttagcttttcctgcggatttac----ggatttttgtataaattccgcaggaaacacatttcctacaggttttgccaaggatttagattcccag 767383  T
Q  152 gagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
    | |||||||||| || ||||||||||||| |||||||||||||||||||| |||| ||||| |||||||||||||||||| |||||| |||||||    
T  767384 gtgaggtaataccttaggattttaggatctgcaggaaatgtgaaattatccgcagaaaatgagaaattattcgcaggaagaaagtaacgttttgc 767478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 12267513 - 12267314
Alignment:
Q  50 ctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttccc 149  Q
    ||||||||||||| |||||||  |||||||||| ||||| ||| ||||||||||||| ||| |||||||| || ||||||||||| | |||||| |||      
T  12267513 ctagaacttttagcttttcctgtggatttacctgcggatttttatgtaaattccgcaagaaacacatttcctgtagattttgccacgaatttagattcgt 12267414  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat 249  Q
    ||| ||||||||||  | |||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  12267413 aggtgaggtaataccataggattttaggatccgcaggaaatgtg-aattatccgcagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgat 12267315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 13942886 - 13942684
Alignment:
Q  50 ctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaa---ccacatttcatgcagattttgccaaggatttaggtt 146  Q
    |||||||||| || ||||||| | ||||||||| | ||| |||||||| ||||| ||  ||   ||||||||| ||||||||||||||||||||||| ||    
T  13942886 ctagaactttgagcttttcctaccgatttacctgcagatttttgtgtagattccacaataaacaccacatttcctgcagattttgccaaggatttagatt 13942787  T
Q  147 cccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
      |||| |||||||||| || |||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||| |||||||    
T  13942786 atcaggtgaggtaataccttaggattttaggatccgcaggaaatgtg-aattatccacaggaaatgtgaaattattcgcaggaaggaagtaacgttttgc 13942688  T
Q  247 gata 250  Q
    ||||    
T  13942687 gata 13942684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 16667603 - 16667458
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| ||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  16667603 ccattactagaacttttagcttttcctgcggatttacctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttag 16667504  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    ||||||| | ||||||||||  | ||||||||||||||||| ||||    
T  16667503 gttcccatgtgaggtaataccataggattttaggatccgcaagaaa 16667458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 21069003 - 21069205
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| ||||||  |||||| ||||||||||| || || |||||||| |||||||| ||| |||||||| ||||||||||||||| |||||||    
T  21069003 ccattactagaatttttagcctttcctgcggatttacctgcgcatttttgtgtatattccgcaagaaacacatttcctgcagattttgccaaagatttag 21069102  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttt 243  Q
    ||||| ||| ||||| ||||  | |||||||||||||| |||||||   || | |||||||||||||||||||||||||  |||||||||| ||| ||||    
T  21069103 gttcctaggtgaggttataccataggattttaggatccacaggaaa---gata-tatctgcaggaaatgtgaaattatttccaggaaggaaataacgttt 21069198  T
Q  244 tgcgata 250  Q
    |||||||    
T  21069199 tgcgata 21069205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 15503950 - 15504133
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatcc-- 181  Q
    ||||| ||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||  ||||||||||  | ||||||||||||||      
T  15503950 cggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgccaaggatttaggttcccagatgaggtaataccataggattttaggatccgc 15504049  T
Q  182 ---------------gcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  15504050 gggaaagatatatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 15504133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 36234652 - 36234486
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||| ||||||||| ||| ||| | |||||| |||||||||| |||||| |||| ||||| ||| ||||| ||||  |   ||||||||||||||    
T  36234652 cggatttttatgtaaattcagcaggaaacgcatttcctgcagattttaccaagggtttaagttcctaggtgaggtgataccataacattttaggatccgc 36234553  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||  ||||||||||    
T  36234552 aggaaatgtgaaattatctgcaagaaatgtgaaattattcgcaagaaggaagtaacattttgcgata 36234486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 17192779 - 17192634
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| ||||||||||||| | ||||| ||||||||||  ||||| ||||||| ||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  17192779 ccattactagaacttttagctcttcctgcggatttaccggcggatttttgtgtcaattccgcaggaaatacatttcctgcagattttgtcaaggatttag 17192680  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    ||||||||  ||||||||||  | ||||||||||||||||||||||    
T  17192679 gttcccagatgaggtaataccattggattttaggatccgcaggaaa 17192634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 14832814 - 14832742
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14832814 atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 14832742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 15675307 - 15675497
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||  |||| || ||||||||||| ||||  ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||     
T  15675307 ccattactagaatttttaactttttctgcggatttacctgcggagttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaa 15675406  T
Q  144 gttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgtt 242  Q
    ||||| ||||| || ||                  ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  15675407 gttccgcaggaaagatat-----------------atccgaaggaaatgtgaaattatctacaggaaatgtgaaattattcgcaggaaggaagtaacgtt 15675489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 250
Target Start/End: Original strand, 35468910 - 35469087
Alignment:
Q  57 ttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggaga 155  Q
    |||||| |||| || |||||||  || ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||| |    
T  35468910 ttttagctttttctgcggatttttctgcggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttccgcaggaaa 35469009  T
Q  156 ggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    | ||                  ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  35469010 gatat-----------------atccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 35469087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 32953670 - 32953599
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||    
T  32953670 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacattttgcgata 32953599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 33006914 - 33007005
Alignment:
Q  57 ttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    |||||| ||||||| ||||||||||| ||||| ||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  33006914 ttttagcttttcctgcggatttacctgcggatttttgtgtaaattccgtaggaaacacatttcctgcagattttgccaaggatttaggttcc 33007005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 43228768 - 43228655
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||||||||||||| ||||||| ||||||||||| ||||| ||| ||||||||||||| ||| |||||||| ||||||    
T  43228768 tttgtagcaagccc-agccattactagaacttttagcttttcctacggatttacctgcggatgtttatgtaaattccgcaggaaacacatttcctgcaga 43228670  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  43228669 ttttgcctaggattt 43228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 34846345 - 34846465
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    ||||||||||| || ||| ||| |||||| |||||| || |||| ||||||||||| ||||| |||||||||||||||||  || |||||||| | ||||    
T  34846345 tttgtagcaagtcaaacc-attactagaatttttagcttatcctgcggatttacctccggatttttgtgtaaattccgcagtaaacacatttcctacaga 34846443  T
Q  127 ttttgccaaggatttaggttcc 148  Q
    ||||||||||||||||||||||    
T  34846444 ttttgccaaggatttaggttcc 34846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 2476477 - 2476549
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  2476477 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 2476549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 34444078 - 34444150
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  34444078 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 34444150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 16567904 - 16567975
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  16567904 tccgcaggaaatgtgaaattatccgcaggaaatgtgaaattattcccaggaaggaagtaacattttgcgata 16567975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 1672484 - 1672418
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||    
T  1672484 aggaaatgtgaaattatctgcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 1672418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 37779670 - 37779767
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| |||||||||||||||||| || ||||||||||| || |||||| ||||||||||| ||||| |||||||| ||||||||||| | |||||||    
T  37779670 ccattactagaacttttagttttttctgcggatttacctgcgaatatttatgtaaattccgtatgaaacacatttcctgcagattttgtctaggattt 37779767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 6900879 - 6900951
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||  ||||||||||    
T  6900879 atccgcaagaaatgtgaaattatccgcaggaaatgtgaaattattcgcatgaaggaagtaacattttgcgata 6900951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 7162086 - 7162015
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||    
T  7162086 tccgcaggaaatgtgaaattatccacaggaaatgtgaaattatttgcaggaaggaagtaacattttgcgata 7162015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 30248999 - 30249149
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggagaggtaatacattgggattttaggatccg 182  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||| || ||                  |||||    
T  30248999 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttccgcaggaaagata-----------------tatccg 30249081  T
Q  183 caggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
     ||||||||||||||||||||||| ||||||||||||||| |||||||| ||| || |||||||||||    
T  30249082 taggaaatgtgaaattatctgcagaaaatgtgaaattatttgcaggaagaaagcaacgttttgcgata 30249149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 32953793 - 32953680
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||||||||||||| ||||||| ||||||||||| |  || ||| ||||||||||| | ||| |||||||| ||||||    
T  32953793 tttgtagcaagccc-agccattactagaacttttagcttttcctacggatttacctgcaaatttttatgtaaattccgtaggaaacacatttcctgcaga 32953695  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  32953694 ttttgcctaggattt 32953680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 43228645 - 43228575
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat 249  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||| | |||||  |||||||||    
T  43228645 tccgcaggaaatgtgaaattatctgcaagaaatatgaaattattcgcaggaaaggagtaacattttgcgat 43228575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 8214701 - 8214628
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaa 189  Q
    |||| ||||||||||| |||||||||||||||  ||| |||||||||| || ||||||||||||||||||||||    
T  8214701 tttcctgcagattttgtcaaggatttaggttcttaggtgaggtaatactttaggattttaggatccgcaggaaa 8214628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 37607471 - 37607560
Alignment:
Q  52 agaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    |||||||||||||||| || ||||||||||| |  |||||| ||||||||||| ||||| |||||||| ||||||||||| | |||||||    
T  37607471 agaacttttagttttttctgcggatttacctgcaaatatttatgtaaattccgtatgaaacacatttcctgcagattttgtctaggattt 37607560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 141
Target Start/End: Complemental strand, 7162209 - 7162096
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||| || |||||| ||||||| |||||||||||  |||| ||| |||||||||| || ||| |||||||| ||||||    
T  7162209 tttgtagcaagccc-agccattactaaaaattttagcttttcctgcggatttacctgaggatttttatgtaaattccacaggaaacacatttcctgcaga 7162111  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  7162110 ttttgcctaggattt 7162096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 33007025 - 33007070
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  33007025 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 33007070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 34846485 - 34846530
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  34846485 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 34846530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 16567797 - 16567894
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||||||||||||| ||||| | ||||||||||| || ||  || |||||||| |||| ||| |||||||| | ||||||||||| |||||||    
T  16567797 ccattactagaacttttagcttttcttgcggatttacctgcgaattgttatgtaaatttcgcaggaaacacatttcctacagattttgcctaggattt 16567894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 34444000 - 34444064
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||| ||||||||||| |||   |||||| ||||||||||||||||||||||||||||    
T  34444000 cggatttttgtctaaattccgcaagaaatgcatttcctgcagattttgccaaggatttaggttcc 34444064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 37552051 - 37552086
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  37552051 gcaggaaatgtgaaattattcgcaggaaggaagtaa 37552086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 37654881 - 37654916
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||||||||||||||||    
T  37654881 gcaggaaatgtgaaattattcgcaggaaggaagtaa 37654916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 1672596 - 1672499
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggattt 141  Q
    ||||| ||||||||||||   |||||| ||||||||||| || || ||| |||| |||||||| ||| || ||||  ||||||||||||| |||||||    
T  1672596 ccattactagaacttttatcctttcctgcggatttacctgcgaatttttatgtacattccgcaggaaacatattttctgcagattttgcctaggattt 1672499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 13695094 - 13695125
Alignment:
Q  121 tgcagattttgccaaggatttaggttcccagg 152  Q
    ||||||||||||||||||||||||||||||||    
T  13695094 tgcagattttgccaaggatttaggttcccagg 13695125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 238
Target Start/End: Original strand, 37779780 - 37779815
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37779780 gcaggaaatgtgaaattattcgctggaaggaagtaa 37779815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 2836321 - 2836110
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| ||||||||||||| |||| || |||||| | || ||||| || |||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  2836321 ccattcctagaacttttagctttttctgcggattgatctgcggattttcgtgtaaattccgcaggaaatacatttcctgcagattttgtcaaggatttag 2836222  T
Q  144 gttcccaggagaggtaatacattgggattttaggatccgcag-----------------gaaatgtgaaattatctgcaggaaatgtgaaattattcgca 226  Q
    ||||||||| ||||||||||  | ||||||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||    
T  2836221 gttcccaggtgaggtaataccataggattttaggatccgcaggaaaagtatatcgacaggaaatgtgaaattatctgcaggaaatgtgaaattattcgca 2836122  T
Q  227 ggaaggaagtaa 238  Q
    ||||||||||||    
T  2836121 ggaaggaagtaa 2836110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 9696057 - 9696240
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-c 149  Q
    ||||| |||||| ||||||| ||||||||||| | ||| ||||||||||||||||| ||| || ||||| |||||||||||||||||||||||||||| |    
T  9696057 tagaatttttagattttcctgcggatttacctgcagatttttgtgtaaattccgcaggaaacatatttcctgcagattttgccaaggatttaggttccgc 9696156  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat 249  Q
    |||| || ||                  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9696157 aggaaagatat-----------------atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgat 9696239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 34188856 - 34188981
Alignment:
Q  123 cagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattatt 222  Q
    |||||||| |||| ||||||| ||| |||| || ||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34188856 cagattttaccaatgatttagattctcaggtgaagtaataccttaggattttaggatccgcaggaaatgtgaaattatccgcaggaaatgtgaaattatt 34188955  T
Q  223 cgcaggaaggaagtaatgttttgcga 248  Q
    |||| ||  || |||| |||||||||    
T  34188956 cgcaagagagaggtaacgttttgcga 34188981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 2941237 - 2941407
Alignment:
Q  64 ttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-caggagaggtaata 162  Q
    ||||||| ||||||||||| ||||| || ||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||| || || || ||       
T  2941237 ttttcctgcggatttacctgcggattttagtgtaaatttcgcaggaaacacatttcctgcagattttgccaaggatttaggttccgcatgaaagatat-- 2941334  T
Q  163 cattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
                   ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  2941335 ---------------atccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 2941407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 250
Target Start/End: Original strand, 15528948 - 15529131
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc-c 149  Q
    ||||| |||||| ||||||| ||||||||||| ||||| ||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||| |    
T  15528948 tagaatttttagcttttcctgcggatttacctgcggatgtttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttccgc 15529047  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat 249  Q
    |||| || ||                  ||| | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  15529048 aggaaagatat-----------------atctgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaagaagtaatgttttgcgat 15529130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 10397818 - 10397740
Alignment:
Q  172 tttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||| |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  10397818 tttaggttccgtaggaaatgtgaaattatctgttggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 10397740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 23663762 - 23663690
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  23663762 atccgtagaaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaatgaagtaacgttttgcgata 23663690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 9047036 - 9046932
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| |||||||||||   ||| |||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||    
T  9047036 ccattactagaatttttagcttttcctgcggatttacctgtagatttttgtgtagattccgcaggaaacacatttcctgcagattttgtcaaggatttag 9046937  T
Q  144 gttcc 148  Q
    |||||    
T  9046936 gttcc 9046932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 34249016 - 34248944
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| || |||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  34249016 atccgtagaaaatatgaaattatctgcaggaaatgtgaaattatccgcaggaaggaagtaacgttttgcgata 34248944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 28614406 - 28614335
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||||    
T  28614406 tccgtaggaaatgtgaaattatcagcagaaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 28614335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 14938919 - 14938853
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||  ||||||||||    
T  14938919 aggaaatgtgaaattatctgcaggaaatgtgaaattattcccaggaagaaagtaacattttgcgata 14938853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 15122156 - 15122228
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||| |||||| |||||||||||    
T  15122156 atccgtaggaaatgtaaaattatctgcagaaaatgtgaaattattcgcagaaagaaagtaacgttttgcgata 15122228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 9046912 - 9046846
Alignment:
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||| |||||    
T  9046912 aggaaatgtgaaattatctgcaggaaatgtgaaattattcaaaggaaggaaataacgttttccgata 9046846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 162
Target Start/End: Original strand, 339371 - 339448
Alignment:
Q  85 ggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaata 162  Q
    |||| ||||||||||||||| | |||  ||||||| |||||||||| ||||||||||||||||||||| |||||||||    
T  339371 ggatttttgtgtaaattccgtaggaaatacatttcctgcagattttaccaaggatttaggttcccaggtgaggtaata 339448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 15122045 - 15122142
Alignment:
Q  51 tagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| |||||| |||| || ||||||||||| ||||| | ||| ||||||| ||| ||| |||||||| |||||||||||||||||||||| |||||    
T  15122045 tagaatttttagctttttctgcggatttacctgcggatttgtgtctaaattctgcaggaaacacatttcctgcagattttgccaaggatttacgttcc 15122142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 23663840 - 23663776
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||| |||||    
T  23663840 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttatgttcc 23663776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 148
Target Start/End: Complemental strand, 1781102 - 1781039
Alignment:
Q  85 ggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    |||| |||||||||||||| || ||| |||||||| ||||||||||||||||||||||||||||    
T  1781102 ggatttttgtgtaaattcctcaggaaacacatttcctgcagattttgccaaggatttaggttcc 1781039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 2960794 - 2960845
Alignment:
Q  187 aaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaa 238  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  2960794 aaatgtgaaattatccgcaggaaatgtgaaattattcgcaagaaggaagtaa 2960845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 31200156 - 31200094
Alignment:
Q  182 gcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgtttt 244  Q
    |||||||||||||||||||| |  | ||||||||||||||||||||||||||||||| |||||    
T  31200156 gcaggaaatgtgaaattatccgtggaaaatgtgaaattattcgcaggaaggaagtaacgtttt 31200094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 1781019 - 1780974
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  1781019 aggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 1780974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 10397866 - 10397809
Alignment:
Q  91 ttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    |||||||||||||||| ||| |||||||| |||| |||||||||||||||||||||||    
T  10397866 ttgtgtaaattccgcaggaaacacatttcctgcatattttgccaaggatttaggttcc 10397809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 31188315 - 31188243
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||| ||| |||| |||||||||| | || |||||||||||||||| |||||||||||||| |||||||||||    
T  31188315 atcctcagaaaatttgaaattatccgtagaaaatgtgaaattattcacaggaaggaagtaacgttttgcgata 31188243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 34249094 - 34249030
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||| ||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  34249094 cggatttttgtgtaaattctgcaggaaacacatttcctgcagattttgccaagggtttaggttcc 34249030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 339476 - 339523
Alignment:
Q  203 gcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||| | |||||||||||||||  ||||||||||    
T  339476 gcaggaaatgtgaaattaattgcaggaaggaagtaacattttgcgata 339523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 28614508 - 28614434
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattc 102  Q
    |||||||||||||  | ||||| ||||||||||||  ||||||| ||||||||||| ||||| ||| |||||||||    
T  28614508 tttgtagcaagcct-agccattactagaacttttaacttttcctacggatttacctgcggatttttatgtaaattc 28614434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 246
Target Start/End: Complemental strand, 48940553 - 48940340
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||  | ||||| ||||||||||||||||| ||| |||||||||||||||    
T  48940553 tttgtagcaagcca-agccattactagaacttttagcttttcctgcggatttatttgcggatttttgtgtaaattccgcaggaaacacatttcatgcaga 48940455  T
Q  127 ttttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgca 226  Q
    ||||| ||||||||||| ||  |||| |||||||||   ||  |||     ||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  48940454 ttttgtcaaggatttagcttttcaggtgaggtaataacgtgaaatt-----atctgcaggaaatgtgaaattatctgcaaaaaatgtgaaattattcgca 48940360  T
Q  227 ggaaggaagtaatgttttgc 246  Q
    | || ||| ||| |||||||    
T  48940359 gtaaagaaataaagttttgc 48940340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 250
Target Start/End: Original strand, 14727324 - 14727514
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| ||||||||||| ||||  ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  14727324 ccattactagaatttttagcttttcctgcggatttacctgcggagttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttag 14727423  T
Q  144 gttcc-caggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgtt 242  Q
    ||||| ||||| || ||                  ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14727424 gttccgcaggaaagata-----------------tatctgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaacgtt 14727506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 24646088 - 24646203
Alignment:
Q  85 ggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgca 184  Q
    |||| |||||||| |||||| | ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||    
T  24646088 ggatttttgtgtacattccgtaggaaacacatttcctgcagattttgccaaggatttaggttcccaggtgaggtaatacctttggatttttggatccgca 24646187  T
Q  185 ggaaatgtgaaattat 200  Q
    |||||| |||||||||    
T  24646188 ggaaatttgaaattat 24646203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 27460785 - 27460863
Alignment:
Q  172 tttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27460785 tttaggttccgtaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 27460863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 34459150 - 34459305
Alignment:
Q  91 ttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaat 190  Q
    ||||| || ||||| | ||| |||||||| |||||||||||||||||||||| |||| |||| |||||||||| || ||||||||||||||||| ||||     
T  34459150 ttgtggaatttccgtaggaaacacatttcctgcagattttgccaaggatttaagttctcaggtgaggtaataccttaggattttaggatccgcaagaaa- 34459248  T
Q  191 gtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
      || | |||||| ||||||||||||||||||||  |||||||||||| |||||| ||||    
T  34459249 --gata-tatctgtaggaaatgtgaaattattcgtgggaaggaagtaacgttttgtgata 34459305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 24745434 - 24745562
Alignment:
Q  72 cggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggat 171  Q
    |||||||||||  || | ||||||||||||| ||| ||| |||||||  ||||||||||||||||||||||||||   ||| ||||||||||  | ||||    
T  24745434 cggatttacctgtggttttttgtgtaaattctgcaggaaacacattttctgcagattttgccaaggatttaggttttaaggtgaggtaataccctaggat 24745533  T
Q  172 tttaggatccgcaggaaatgtgaaattat 200  Q
    |||||||||||||||||||||||||||||    
T  24745534 tttaggatccgcaggaaatgtgaaattat 24745562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 31844741 - 31844637
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| ||||||||||| | ||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  31844741 ccattactagaaattttagcttttcctacggatttacctgcagatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttag 31844642  T
Q  144 gttcc 148  Q
    |||||    
T  31844641 gttcc 31844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 6331680 - 6331784
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttag 143  Q
    ||||| |||||| |||||| ||||||| ||| ||||||| ||||| ||||||||||||||||| ||| |||||||| | |||||||||||||||||||||    
T  6331680 ccattactagaaattttagcttttcctgcgggtttacctccggatttttgtgtaaattccgcaggaaacacatttcctacagattttgccaaggatttag 6331779  T
Q  144 gttcc 148  Q
    |||||    
T  6331780 gttcc 6331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 250
Target Start/End: Original strand, 49898442 - 49898572
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtga 215  Q
    |||| ||||||||||||||||||||||||| || ||| |||||||||| || ||||||||||||||||| ||||   || | ||||  ||||||||||||    
T  49898442 tttcctgcagattttgccaaggatttaggtccctaggtgaggtaataccttaggattttaggatccgcaagaaa---gata-tatccacaggaaatgtga 49898537  T
Q  216 aattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||| ||||  ||||||||||    
T  49898538 aattattcgcaggaaggacgtaacattttgcgata 49898572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 4642040 - 4641969
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgat 249  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4642040 atccgcaggaaatatgaaattatccgcaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgat 4641969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 125 - 250
Target Start/End: Complemental strand, 6802136 - 6802015
Alignment:
Q  125 gattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcg 224  Q
    |||||||||||||||||||||||||||| |||||||||| ||  ||||||||||||| ||||||| ||     ||||||||||||||||| |||||| ||    
T  6802136 gattttgccaaggatttaggttcccaggtgaggtaataccttacgattttaggatcctcaggaaaggt----atatctgcaggaaatgtgcaattatccg 6802041  T
Q  225 caggaaggaagtaatgttttgcgata 250  Q
    || | ||||| ||| |||||||||||    
T  6802040 catgtaggaaataacgttttgcgata 6802015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 84 - 250
Target Start/End: Original strand, 9527079 - 9527241
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| || ||||||||| | || ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||  || |||||||||||||| |    
T  9527079 cggattttggtgtaaatttcacaggaaacacatctcctgcagattttgccaaggatttaggttcccaggtgaggtaatatcttaggattttaggatcctc 9527178  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
      ||||   || | ||||   |||||||||||||||||||||||||||  ||||| |||||||||||    
T  9527179 cagaaa---gata-tatccataggaaatgtgaaattattcgcaggaagacagtaacgttttgcgata 9527241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 25007576 - 25007648
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  25007576 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 25007648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 37153993 - 37153921
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  37153993 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 37153921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 44305524 - 44305596
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  44305524 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 44305596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 27584094 - 27583963
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||     ||| || | ||            |||||     
T  27584094 cggatttttgtgtaaattccgcaggaaacacatttcctgcagattttgccaaggatttaggttcccc----aggaaagatat------------atccgt 27584011  T
Q  184 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaag 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27584010 aggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaag 27583963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 4774085 - 4774156
Alignment:
Q  179 tccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||  ||||||||||    
T  4774085 tccgcaggaaatgtgaaattatccgcaagaaatgtgaaattattcgcaggaagaaagtaacattttgcgata 4774156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 4642151 - 4642046
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcccaggagaggtaatacattgggattttaggatccgc 183  Q
    ||||| ||| |||||||| | || |||  ||||||| ||||||||||| |||||||||||||| | ||| |||||||||| || ||||||||||||||||    
T  4642151 cggatttttatgtaaatttcacaggaaatacatttcttgcagattttgtcaaggatttaggtttcgaggtgaggtaataccttaggattttaggatccgc 4642052  T
Q  184 aggaaa 189  Q
    ||||||    
T  4642051 aggaaa 4642046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 25011540 - 25011468
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| ||||||||||||||||||||||| |||||  |||||||||||| ||||||||||| |||||||||||    
T  25011540 atccgtaggaaatgtgaaattatctgcagaaaatgcaaaattattcgcatgaaggaagtaacgttttgcgata 25011468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 8239285 - 8239391
Alignment:
Q  44 ccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaa--ccacatttcatgcagattttgccaaggattt 141  Q
    ||||| |||||| |||||| ||||||| | ||||||||| ||||| ||||||||||||||||| |||    | ||||| |||||||||||||||||||||    
T  8239285 ccattactagaatttttagcttttcctgcagatttacctgcggatttttgtgtaaattccgcaggaaatatatatttcctgcagattttgccaaggattt 8239384  T
Q  142 aggttcc 148  Q
    |||||||    
T  8239385 aggttcc 8239391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 1428422 - 1428353
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcg 247  Q
    ||||| ||||||||||||  ||||||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  1428422 atccgtaggaaatgtgaatctatctgcagaaaatgtgaaattattcgtaggaaggaagtaacgttttgcg 1428353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 25011617 - 25011553
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| ||| |||||||  ||||||||||||||||||||||||||||    
T  25011617 cggatttttgtgtaaattccgcaggaaacacattttctgcagattttgccaaggatttaggttcc 25011553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 27460730 - 27460794
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||| | ||| |||||||| ||||||||||||||||||||||||||||    
T  27460730 cggatttttgtgtaaattccgaaggaaacacatttcctgcagattttgccaaggatttaggttcc 27460794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 198 - 250
Target Start/End: Complemental strand, 33468954 - 33468902
Alignment:
Q  198 tatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33468954 tatctgtaggaaatgtgaaattattcgcaggaaggaagtaacgttttgcgata 33468902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 31844617 - 31844572
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  31844617 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 31844572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 44238844 - 44238791
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaag 231  Q
    ||||||| |||||||||||||||| ||||||||||||||| |||||||| ||||    
T  44238844 atccgcatgaaatgtgaaattatccgcaggaaatgtgaaaatattcgcatgaag 44238791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 37154071 - 37154007
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    ||||| ||||||||||||||||||||||||||||    
T  37154071 cggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 37154007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 44305446 - 44305510
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| ||||||||||||||||| |||    ||||| ||||||||||||||||||||||||||||    
T  44305446 cggatttttgtgtaaattccgcaggaaatgtatttcctgcagattttgccaaggatttaggttcc 44305510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 25007498 - 25007561
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttc 147  Q
    ||||| ||||||||||||||||| |||    ||||| |||||||||||||||||||||||||||    
T  25007498 cggatttttgtgtaaattccgcaagaaatgtatttcctgcagattttgccaaggatttaggttc 25007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 44238929 - 44238875
Alignment:
Q  94 tgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||||||| ||| ||| |||||||| || |||||||||||||||||||||||||    
T  44238929 tgtaaattctgcaggaaacacatttcttgtagattttgccaaggatttaggttcc 44238875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 6331804 - 6331849
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||| | ||||||||||||| |||||||||||    
T  6331804 aggaaatgtgaaattatttgaaggaaggaagtaacgttttgcgata 6331849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 8239411 - 8239456
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||    
T  8239411 aggaaatgtgaaattattcataggaaggaagtaacgttttgcgata 8239456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 1428468 - 1428436
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcc 148  Q
    |||| ||||||||||||||||||||||||||||    
T  1428468 tttcctgcagattttgccaaggatttaggttcc 1428436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 4774041 - 4774085
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagatt 128  Q
    ||||||||| ||||||||||||| ||| |||||||| ||||||||    
T  4774041 cggatatttatgtaaattccgcaggaaacacatttcctgcagatt 4774085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 33169370 - 33169334
Alignment:
Q  116 tttcatgcagattttgccaaggatttaggttcccagg 152  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  33169370 tttcctgcggattttgccaaggatttaggttcccagg 33169334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 109414 - 109255
Alignment:
Q  50 ctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttccc 149  Q
    ||||||||||||  |||||||  |||||||||| || || |||||||||||||||||  || ||||| |  |||||||||||| ||| ||||||||||||    
T  109414 ctagaacttttaacttttcctgtggatttacctgcgaatttttgtgtaaattccgcagaaaacacatgttctgcagattttgctaagaatttaggttccc 109315  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaa 209  Q
    ||| ||| ||||||  | |||||||||||||| ||||||| ||||||||||  |||||||    
T  109314 aggtgagataataccataggattttaggatccacaggaaacgtgaaattattcgcaggaa 109255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 246
Target Start/End: Complemental strand, 112329 - 112140
Alignment:
Q  50 ctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttccc 149  Q
    ||||||||||||  ||||||| ||||||||||| || || |||||||||||||| || ||  |||||||  |||||||| ||| ||| ||||||||||||    
T  112329 ctagaacttttaacttttcctacggatttacctgcgaatttttgtgtaaattccaca-ga--cacattttctgcagattctgctaagaatttaggttccc 112233  T
Q  150 aggagaggtaatacattgggattttaggatccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
    ||  ||||||||||  | ||||||||||||||||||||||   || | ||||  || |||| ||||||||||| |||||||||||||||||||||||    
T  112232 agatgaggtaataccataggattttaggatccgcaggaaa---gata-tatccacatgaaacgtgaaattatttgcaggaaggaagtaatgttttgc 112140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 246
Target Start/End: Complemental strand, 109273 - 109239
Alignment:
Q  212 gtgaaattattcgcaggaaggaagtaatgttttgc 246  Q
    |||||||||||||||||||||||||||||||||||    
T  109273 gtgaaattattcgcaggaaggaagtaatgttttgc 109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 1808 - 1880
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1808 atccgtaggaaatgtgaacttatctgcaggaaatgtgaaattattcgcagaaaggaagtaacgttttgcgata 1880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 1730 - 1794
Alignment:
Q  84 cggatatttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||| |||||||||||| |||| ||| |||||||| |||||||||||||||| ||||| |||||    
T  1730 cggatttttgtgtaaatttcgcaggaaacacatttcctgcagattttgccaagaatttacgttcc 1794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 250
Target Start/End: Original strand, 11636 - 11708
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  11636 atccgtaggaaatgtgaatttatctgcaggaaatgtgaaattattcgtaggaaggaagtaacgttttgcgata 11708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 7023 - 7088
Alignment:
Q  178 atccgcaggaaatgtgaaattatctgcaggaaatgtgaaattattcgcaggaaggaagtaatgttt 243  Q
    ||||| |||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||| ||||    
T  7023 atccgtaggaaatgtgaatttatcagcaggaaatgtaaaattattcgtaggaaggaagtaacgttt 7088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 6952 - 7009
Alignment:
Q  91 ttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    |||||||||||||| | |||   |||||| ||||||||||||||||||||||||||||    
T  6952 ttgtgtaaattccgaaggaaatgcatttcctgcagattttgccaaggatttaggttcc 7009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 11565 - 11622
Alignment:
Q  91 ttgtgtaaattccgcatgaaccacatttcatgcagattttgccaaggatttaggttcc 148  Q
    ||||||||||||||||  ||   |||||| ||||||||||||||||||||||||||||    
T  11565 ttgtgtaaattccgcagaaaatgcatttcctgcagattttgccaaggatttaggttcc 11622  T

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Target: scaffold0638 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0638
Description:

Target: scaffold0638; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 141
Target Start/End: Original strand, 4089 - 4202
Alignment:
Q  27 tttgtagcaagccagacccatttctagaacttttagtttttccttcggatttacctacggatatttgtgtaaattccgcatgaaccacatttcatgcaga 126  Q
    |||||||||||||  | ||||| ||||||||||||| ||||||| || |||||||| ||||| ||| ||||||||||| | ||| |||||||| ||||||    
T  4089 tttgtagcaagccc-agccattactagaacttttagcttttcctgcgaatttacctgcggatgtttatgtaaattccgtaggaaacacatttcctgcaga 4187  T
Q  127 ttttgccaaggattt 141  Q
    ||||||| |||||||    
T  4188 ttttgcccaggattt 4202  T

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Target: scaffold0638; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 4217 - 4262
Alignment:
Q  205 aggaaatgtgaaattattcgcaggaaggaagtaatgttttgcgata 250  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||    
T  4217 aggaaatgtgaaattattcgcaggaaggaagtaacattttgcgata 4262  T

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Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 20978 - 20937
Alignment:
Q  168 ggattttaggatccgcaggaaatgtgaaattatctgcaggaa 209  Q
    |||||||||||||||||||||||||| ||||||| |||||||    
T  20978 ggattttaggatccgcaggaaatgtgcaattatccgcaggaa 20937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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