View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_338 (Length: 250)

Name: NF11737A_low_338
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_338
NF11737A_low_338
[»] chr7 (6 HSPs)
chr7 (14-241)||(11915799-11916025)
chr7 (166-234)||(37356586-37356654)
chr7 (166-231)||(26839959-26840024)
chr7 (14-55)||(10058756-10058798)
chr7 (166-234)||(18296300-18296368)
chr7 (167-231)||(34892449-34892513)
[»] chr8 (5 HSPs)
chr8 (166-234)||(1296013-1296081)
chr8 (15-78)||(24104112-24104176)
chr8 (166-203)||(17757689-17757726)
chr8 (166-203)||(17766676-17766713)
chr8 (167-231)||(42176040-42176104)
[»] chr2 (1 HSPs)
chr2 (166-234)||(9372244-9372311)
[»] chr4 (5 HSPs)
chr4 (166-234)||(22278628-22278696)
chr4 (166-233)||(17708371-17708438)
chr4 (166-233)||(5546016-5546083)
chr4 (14-72)||(22225327-22225386)
chr4 (167-231)||(47404434-47404498)
[»] chr1 (2 HSPs)
chr1 (166-234)||(50469939-50470007)
chr1 (166-233)||(27295930-27295997)
[»] chr3 (2 HSPs)
chr3 (166-233)||(44655848-44655915)
chr3 (167-231)||(4616221-4616285)
[»] scaffold0027 (1 HSPs)
scaffold0027 (166-211)||(143701-143746)
[»] chr5 (1 HSPs)
chr5 (166-211)||(11214198-11214243)
[»] chr6 (1 HSPs)
chr6 (167-231)||(3792978-3793042)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 11915799 - 11916025
Alignment:
Q  14 aggtgtaaacaacaaggttgtgtagttcaaagagaatagtaaccaaagtgggggtgtagatagcacctttgtctaaagcttatgtgaaaagnnnnnnnnn 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  11915799 aggtgtaaacaacaaggttgtgtagttcaaagagaatagtaaccaaagtgggggtgtagatagcacctttgtctaaagcttatgtgaaaa-aaaataaaa 11915897  T
Q  114 gtaaataaaatctgaatttgttatagagaaatgataactaaaccannnnnnngacacaatacagacaccatgggcaatttggacttttcaatcttaaaga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11915898 gtaaataaaatctgaatttgttatagagaaatgataactaaaccatttttttgacacaatacagacaccatggacaatttggacttttcaatcttaaaga 11915997  T
Q  214 aaggacattgttgtaaatacagaacacc 241  Q
    ||||||||||||||||||||||||||||    
T  11915998 aaggacattgttgtaaatacagaacacc 11916025  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 37356654 - 37356586
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||  | || ||||||||||||||||    
T  37356654 gacacaatatagacaccatggacaatttggacttttcaaccttaaaatatgggcattgttgtaaataca 37356586  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 231
Target Start/End: Original strand, 26839959 - 26840024
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    ||||||||||||||||||||| |||||| ||||||||||  |||||  |||| |||||||||||||    
T  26839959 gacacaatacagacaccatggacaatttagacttttcaacattaaaacaagggcattgttgtaaat 26840024  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 10058798 - 10058756
Alignment:
Q  14 aggtgtaaacaacaaggttgtgtagtt-caaagagaatagtaa 55  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  10058798 aggtgtaaacaacaaggttgtgtagttacaaagagaatagtaa 10058756  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 18296300 - 18296368
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    |||||||||  ||||||||  ||||||| ||||||| ||  |||||| |||| ||||||||||||||||    
T  18296300 gacacaatagggacaccataagcaatttagactttttaacattaaagtaagggcattgttgtaaataca 18296368  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 34892449 - 34892513
Alignment:
Q  167 acacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    ||||||||||||| ||| ||  |||||||||||||||| ||||||||| ||  ||| ||||||||    
T  34892449 acacaatacagacgccagggataatttggacttttcaaccttaaagaaggggtatttttgtaaat 34892513  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 1296081 - 1296013
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||||  | || ||||||||||||||||    
T  1296081 gacacaatatagacaccatggacaatttggacttttcaaccttaaaatatgggcattgttgtaaataca 1296013  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 24104112 - 24104176
Alignment:
Q  15 ggtgtaaacaacaaggttgtgtagtt-caaagagaatagtaaccaaagtgggggtgtagatagca 78  Q
    |||||||||||||||||||||||||| || | ||||||||||||| | | ||||||| |||||||    
T  24104112 ggtgtaaacaacaaggttgtgtagttacagaaagaatagtaaccagactaggggtgtggatagca 24104176  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 17757726 - 17757689
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttca 203  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  17757726 gacacaatacagacaccatggacaatttggacatttca 17757689  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 17766713 - 17766676
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttca 203  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  17766713 gacacaatacagacaccatggacaatttggacatttca 17766676  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 42176040 - 42176104
Alignment:
Q  167 acacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    |||||| | ||||||||||| || ||| |||||||||  ||||||||| || |||||||||||||    
T  42176040 acacaaaatagacaccatggacattttagacttttcagccttaaagaaggggcattgttgtaaat 42176104  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 9372244 - 9372311
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    |||||||||||||||||||||||||||| ||||| ||||  |||||| |||||||||||||| ||||||    
T  9372244 gacacaatacagacaccatgggcaattt-gacttctcaacattaaagtaaggacattgttgtgaataca 9372311  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 22278628 - 22278696
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    |||||||||||||||||||||| ||||||||  ||||| |||||||| | ||||| | |||||||||||    
T  22278628 gacacaatacagacaccatgggtaatttggatatttcactcttaaagcatggacagttttgtaaataca 22278696  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 17708371 - 17708438
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaatac 233  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||||  | || |||||||||||||||    
T  17708371 gacacaatagagacatcatgggcaatttagacttttcaaccttaaaatatgggcattgttgtaaatac 17708438  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 5546016 - 5546083
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaatac 233  Q
    ||||||||| |||||  ||||||||||| |||||||||| ||||||  | || |||||||||||||||    
T  5546016 gacacaatatagacattatgggcaatttagacttttcaaccttaaaatatgggcattgttgtaaatac 5546083  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 22225386 - 22225327
Alignment:
Q  14 aggtgtaaacaacaaggttgtgtagtt-caaagagaatagtaaccaaagtgggggtgtag 72  Q
    ||||||||||| |||| |||||||||| || ||||||||||||||||  |||||||||||    
T  22225386 aggtgtaaacagcaagattgtgtagttacagagagaatagtaaccaagttgggggtgtag 22225327  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 47404498 - 47404434
Alignment:
Q  167 acacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    |||||||||||||| || ||  |||||||||||||||| ||||||||| ||  ||| ||||||||    
T  47404498 acacaatacagacatcagggataatttggacttttcaaccttaaagaaggggtatttttgtaaat 47404434  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 50469939 - 50470007
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaataca 234  Q
    ||||||||||||||||||| || ||||||||||||||||  |||||| | ||  |||||||||||||||    
T  50469939 gacacaatacagacaccataggtaatttggacttttcaacattaaagcaggggtattgttgtaaataca 50470007  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 27295930 - 27295997
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaatac 233  Q
    ||||||||| ||||| ||||||||||||  ||||||||| ||||||  | || |||||||||||||||    
T  27295930 gacacaatatagacatcatgggcaatttaaacttttcaaccttaaaatatgggcattgttgtaaatac 27295997  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 44655915 - 44655848
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaatac 233  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||  | || ||||||||| |||||    
T  44655915 gacacaatatagacaccatgggcaatttagacttttcaaccttaaaatatgggcattgttgtgaatac 44655848  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 4616221 - 4616285
Alignment:
Q  167 acacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    |||||||| |||||||||||||| |||||||||| ||| | ||||  | |||||||| |||||||    
T  4616221 acacaatatagacaccatgggcattttggactttccaaccataaatcagggacattgatgtaaat 4616285  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 143701 - 143746
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaa 211  Q
    ||||||||| ||||| |||||||||||| |||||||||| ||||||    
T  143701 gacacaatatagacatcatgggcaatttagacttttcaaccttaaa 143746  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 11214243 - 11214198
Alignment:
Q  166 gacacaatacagacaccatgggcaatttggacttttcaatcttaaa 211  Q
    ||||||||| ||| ||||||| ||||||||||||||||| ||||||    
T  11214243 gacacaatatagataccatggacaatttggacttttcaaccttaaa 11214198  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 3793042 - 3792978
Alignment:
Q  167 acacaatacagacaccatgggcaatttggacttttcaatcttaaagaaaggacattgttgtaaat 231  Q
    ||||||||||||||||| ||  ||||||||||| |||| ||||||||| ||  ||| ||||||||    
T  3793042 acacaatacagacaccagggataatttggacttgtcaaccttaaagaaggggtatttttgtaaat 3792978  T

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