View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11737A_low_348 (Length: 249)

Name: NF11737A_low_348
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11737A_low_348
NF11737A_low_348
[»] chr3 (2 HSPs)
chr3 (1-238)||(13219260-13219497)
chr3 (179-238)||(13217036-13217095)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-234)||(238212-238445)
scaffold0002 (167-234)||(240602-240669)
[»] chr2 (1 HSPs)
chr2 (1-77)||(10996334-10996410)
[»] chr4 (1 HSPs)
chr4 (143-238)||(18176963-18177058)
[»] chr5 (1 HSPs)
chr5 (179-238)||(39047942-39048001)
[»] chr7 (1 HSPs)
chr7 (147-235)||(14541323-14541411)
[»] scaffold0380 (1 HSPs)
scaffold0380 (179-238)||(15664-15723)
[»] chr1 (1 HSPs)
chr1 (193-238)||(39386263-39386308)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13219497 - 13219260
Alignment:
Q  1 gtacatgtgttgagctaccaaagaattaaggacccctaatgatgctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagaccc 100  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219497 gtacatgtgttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagaccc 13219398  T
Q  101 ttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccag 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13219397 ttatgtccacggcccaatctaccccccggaggaatatgtgcttctaaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccag 13219298  T
Q  201 caatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13219297 caatgagaaaaagaattgcaatagctaaatgatgatgt 13219260  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 13217095 - 13217036
Alignment:
Q  179 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13217095 ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 13217036  T

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Target: scaffold0002 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 238212 - 238445
Alignment:
Q  1 gtacatgtgttgagctaccaaagaattaaggacccctaatgatgctagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagaccc 100  Q
    |||||| ||||||||||| || ||| |||  |||||||| || ||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||    
T  238212 gtacatatgttgagctactaaggaagtaataacccctaaagaagctagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggccc 238311  T
Q  101 ttatgtccacgccccaatctaccccccggaggaatatgtgcttctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccag 200  Q
    ||||| |||||||| |||| ||||||||||||| |||| ||||||||||  ||||| |||||||||||||| ||||||||||||| |||||| ||||| |    
T  238312 ttatgcccacgccctaatcgaccccccggaggagtatgcgcttctaaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccgg 238411  T
Q  201 caatgagaaaaagaattgcaatagctaaatgatg 234  Q
    |||||||||||| || ||||||||||||||||||    
T  238412 caatgagaaaaataaatgcaatagctaaatgatg 238445  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 240602 - 240669
Alignment:
Q  167 ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatg 234  Q
    ||||||||  |||| || |||||||||||||| || || || |||||||| |||||||||||||||||    
T  240602 ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatgatg 240669  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 10996410 - 10996334
Alignment:
Q  1 gtacatgtgttgagctaccaaagaattaaggacccctaatgatgctagagcaaggcctaattgaaaatgaattgaat 77  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  10996410 gtacatgtgttgagctaccaaagaagtaatgacccctaatgaggctagagcaaggcctaattgaaaatgaattgaat 10996334  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 18176963 - 18177058
Alignment:
Q  143 tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    |||||||| ||| ||||||  || ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18176963 tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatgatgatgt 18177058  T

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Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 39048001 - 39047942
Alignment:
Q  179 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  39048001 ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatgatgatgt 39047942  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 14541323 - 14541411
Alignment:
Q  147 aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatga 235  Q
    |||| ||||||||||  || |||||| |  |||||||| |||||||||||||  ||||||||||||||||||||||||| |||||||||    
T  14541323 aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatgatga 14541411  T

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Target: scaffold0380 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 15723 - 15664
Alignment:
Q  179 ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    |||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  15723 ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatgatgatgt 15664  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 39386308 - 39386263
Alignment:
Q  193 atgaccagcaatgagaaaaagaattgcaatagctaaatgatgatgt 238  Q
    |||||| |||||| ||||||||||| ||||||||||||||||||||    
T  39386308 atgaccggcaatgcgaaaaagaattacaatagctaaatgatgatgt 39386263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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