View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11737A_low_35 (Length: 450)
Name: NF11737A_low_35
Description: NF11737A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11737A_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 140 - 445
Target Start/End: Original strand, 40552376 - 40552681
Alignment:
| Q |
140 |
atgtcttcattgtttttcgatgttttctctattattttttgtattcttttgaattcaatatcatgggacaaatgtggaagtcttctggaaggtgaagggg |
239 |
Q |
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| T |
40552376 |
atgtcttcattgtttttcgatgttttctctattattttttgtattcttttgaattcaatatcatgggacaaatgtggaagtcttctggaaggtgaagggg |
40552475 |
T |
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| Q |
240 |
ttatagattggataggatgactattcatcgccaaaggagttgaaaaatttcttgggttggcagactgtgctcttactctgctggctgtaagcgaatcaag |
339 |
Q |
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| T |
40552476 |
ttttagattggataggatgacttttcatcgccaaaggaattgaaaaatttcttgggttggcagactgtgctcttactctgctggctgtaagcaaatcaag |
40552575 |
T |
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| Q |
340 |
atttgaatttaagtgtgattgcccaacatctttatttggaaccacagaagattgctcagaatgattagcagggagaccgcatatactattcagctgatgt |
439 |
Q |
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| T |
40552576 |
atttgaatttaagtgtgattgcccaacatctttatttggaaccacagaagattgctcagaatgattagcggggagaccgcatatactattcagctgatgt |
40552675 |
T |
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| Q |
440 |
ccatct |
445 |
Q |
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| T |
40552676 |
tcatct |
40552681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 40552244 - 40552332
Alignment:
| Q |
52 |
aattccttttcaaaatcagatttcaactgcaatttctgctccaaccagaataatattttagtaatcagaaaagatagaaacctagaata |
140 |
Q |
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| T |
40552244 |
aattccttttcaaaatcagatttcaactgcaatttctgctccaaccagaataatattttagtaatcagaaaagatagaaacctagaata |
40552332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 40570298 - 40570386
Alignment:
| Q |
52 |
aattccttttcaaaatcagatttcaactgcaatttctgctccaaccagaataatattttagtaatcagaaaagatagaaacctagaata |
140 |
Q |
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| T |
40570298 |
aattccttttcaaaatcagatttcaaccgcaatttctgctccaacaagaataatattttagtaatcagaaaagatagaaacctagaata |
40570386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 141 - 341
Target Start/End: Original strand, 40570432 - 40570641
Alignment:
| Q |
141 |
tgtcttcattgtttttcgatgttttctctattattttttgtattcttttgaattcaat---------atcatgggacaaatgtggaagtcttctggaagg |
231 |
Q |
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| T |
40570432 |
tgtcttcatggtttttcgaagattgctctattactttttgtattctttcaaattcaatgttcagcggatcataggacaaatgttgaagccttctggaaga |
40570531 |
T |
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| Q |
232 |
tgaaggggttatagattggataggatgactattcatcgccaaaggagttgaaaaatttcttgggttggcagactgtgctcttactctgctggctgtaagc |
331 |
Q |
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| T |
40570532 |
tgaagggggtgtagattgaattggatgattattcatctccaaaggatttgacaaatttcttctgtagccacactgtgctcttactctactggctgtaagc |
40570631 |
T |
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| Q |
332 |
gaatcaagat |
341 |
Q |
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| T |
40570632 |
aaatcaagat |
40570641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 40552231 - 40552177
Alignment:
| Q |
1 |
gagaaaatatgatgtcaaacttcaggagattgaagttgattacagaagctaaatt |
55 |
Q |
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| T |
40552231 |
gagaaaatatgatgtcaaacttcaggagattgaagttgattacagaagctaaatt |
40552177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 40570702 - 40570755
Alignment:
| Q |
351 |
agtgtgattgcccaacatctttatttggaaccacagaagattgctcagaatgat |
404 |
Q |
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| T |
40570702 |
agtgtgactgcccagcatctttgtttggaaccacagaagttggctcagaatgat |
40570755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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